◆◆◆RE_0989 detail◆◆◆

Code name	RE_0989
Locus	AT1G53230
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列95.10%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_0989_1119bp ATGAGACACCACCAATCAGCGACGGAGAACGGTGGTGGTTGCGGCGAGATTGTGGAGGTACAAGGAGGTCACATTGTTCGGTCAACAGGAAGAAAAGACA GACATAGTAAAGTATGTACAGCGAAAGGACCACGTGACCGGCGCGTGAGACTCTCAGCTCCGACGGCGATTCAATTCTACGATGTTCAAGATAGACTTGG TTTTGATCGACCAAGTAAAGCTGTTGATTGGCTTATTACTAAAGCTAAATCCGCCATTGATGATCTTGCTCAGCTTCCTCCTTGGAACCCCGCCGATACT CTTCGTCAACACGCCGCCGCTGCTGCTAACGCTAAACCCAGAAAAGCCAAAACTTTAATTTCTCCGCCACCGCCACAACCGGAAGAAACAGAGCATCATC GAATCGGAGAAGAAGAAGATAACGAATCGAGTTTTCTTCCGGCGTCAATGGATTCTGATTCGATAGCTGACACTATAAAGTCGTTTTTTCCGGTAGCTTC AACGCAACAGAGCTATCATCATCAGCCACCGTCACGAGGCAATACACAGAACCAAGATCTTCTTCGTCTCTCGCTTCAATCTTTCCAAAATGGTCCACCT TTTCCTAATCAAACAGAACCTGCTCTGTTCTCCGGCCAGAGCAATAATCAGTTAGCGTTTGACTCATCGACGGCAAGCTGGGAACAGAGTCATCAGTCAC CGGAATTTGGAAAGATACAGAGACTAGTGTCATGGAACAACGTCGGAGCAGCTGAATCCGCCGGAAGTACCGGAGGATTTGTGTTTGCTTCTCCGTCGTC GTTGCATCCAGTTTATAGCCAAAGTCAGCTTTTATCACAGAGGGGTCCCCTTCAGTCCATTAACACACCTATGATTCGTGCTTGGTTTGATCCTCACCAT CATCATCATCATCATCAGCAGTCCATGACCACTGACGATCTCCACCATCATCATCCCTACCATATCCCTCCCGGGATTCACCAATCTGCTATTCCAGGCA TTGCATTTGCTTCAAGTGGTGAATTCTCCGGTTTTCGTATACCAGCACGGTTTCAAGGCGAACAAGAGGAGCACGGCGGCGACAACAAGCCGTCCTCTGC TTCATCCGATTCTCGCCAT >RE_0989_translated MRHHQSATENGGGCGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKAKSAIDDLAQLPPWNPADT LRQHAAAAANAKPRKAKTLISPPPPQPEETEHHRIGEEEDNESSFLPASMDSDSIADTIKSFFPVASTQQSYHHQPPSRGNTQNQDLLRLSLQSFQNGPP FPNQTEPALFSGQSNNQLAFDSSTASWEQSHQSPEFGKIQRLVSWNNVGAAESAGSTGGFVFASPSSLHPVYSQSQLLSQRGPLQSINTPMIRAWFDPHH HHHHHQQSMTTDDLHHHHPYHIPPGIHQSAIPGIAFASSGEFSGFRIPARFQGEQEEHGGDNKPSSASSDSRH
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1118/1173 (95.3%)（アミノ酸配列で372/391 (95.1%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT1G53 ATGGCACCAGATAACGACCATTTCTTAGATTCTCCGTCGCCGCCTCTTCTAGAGATGAGACACCACCAATCAGCGACGGAGAACGGTGGTGGTTGCGGCG :::::::::::::::::::::::::::::::::::::::::::::: RE_098 ------------------------------------------------------ATGAGACACCACCAATCAGCGACGGAGAACGGTGGTGGTTGCGGCG 10 20 30 40 110 120 130 140 150 160 170 180 190 200 AT1G53 AGATTGTGGAGGTACAAGGAGGTCACATTGTTCGGTCAACAGGAAGAAAAGACAGACATAGTAAAGTATGTACAGCGAAAGGACCACGTGACCGGCGCGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_098 AGATTGTGGAGGTACAAGGAGGTCACATTGTTCGGTCAACAGGAAGAAAAGACAGACATAGTAAAGTATGTACAGCGAAAGGACCACGTGACCGGCGCGT 50 60 70 80 90 100 110 120 130 140 210 220 230 240 250 260 270 280 290 300 AT1G53 GAGACTCTCAGCTCCGACGGCGATTCAATTCTACGATGTTCAAGATAGACTTGGTTTTGATCGACCAAGTAAAGCTGTTGATTGGCTTATTACTAAAGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_098 GAGACTCTCAGCTCCGACGGCGATTCAATTCTACGATGTTCAAGATAGACTTGGTTTTGATCGACCAAGTAAAGCTGTTGATTGGCTTATTACTAAAGCT 150 160 170 180 190 200 210 220 230 240 310 320 330 340 350 360 370 380 390 400 AT1G53 AAATCCGCCATTGATGATCTTGCTCAGCTTCCTCCTTGGAACCCCGCCGATACTCTTCGTCAACACGCCGCCGCTGCTGCTAACGCTAAACCCAGAAAAA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_098 AAATCCGCCATTGATGATCTTGCTCAGCTTCCTCCTTGGAACCCCGCCGATACTCTTCGTCAACACGCCGCCGCTGCTGCTAACGCTAAACCCAGAAAAG 250 260 270 280 290 300 310 320 330 340 410 420 430 440 450 460 470 480 490 500 AT1G53 CCAAAACTTTAATTTCTCCGCCACCGCCACAACCGGAAGAAACAGAGCATCATCGAATCGGAGAAGAAGAAGATAACGAATCGAGTTTTCTTCCGGCGTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_098 CCAAAACTTTAATTTCTCCGCCACCGCCACAACCGGAAGAAACAGAGCATCATCGAATCGGAGAAGAAGAAGATAACGAATCGAGTTTTCTTCCGGCGTC 350 360 370 380 390 400 410 420 430 440 510 520 530 540 550 560 570 580 590 600 AT1G53 AATGGATTCTGATTCGATAGCTGACACTATAAAGTCGTTTTTTCCGGTAGCTTCAACGCAACAGAGCTATCATCATCAGCCACCGTCACGAGGCAATACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_098 AATGGATTCTGATTCGATAGCTGACACTATAAAGTCGTTTTTTCCGGTAGCTTCAACGCAACAGAGCTATCATCATCAGCCACCGTCACGAGGCAATACA 450 460 470 480 490 500 510 520 530 540 610 620 630 640 650 660 670 680 690 700 AT1G53 CAGAACCAAGATCTTCTTCGTCTCTCGCTTCAATCTTTCCAAAATGGTCCACCTTTTCCTAATCAAACAGAACCTGCTCTGTTCTCCGGCCAGAGCAATA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_098 CAGAACCAAGATCTTCTTCGTCTCTCGCTTCAATCTTTCCAAAATGGTCCACCTTTTCCTAATCAAACAGAACCTGCTCTGTTCTCCGGCCAGAGCAATA 550 560 570 580 590 600 610 620 630 640 710 720 730 740 750 760 770 780 790 800 AT1G53 ATCAGTTAGCGTTTGACTCATCGACGGCAAGCTGGGAACAGAGTCATCAGTCACCGGAATTTGGAAAGATACAGAGACTAGTGTCATGGAACAACGTCGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_098 ATCAGTTAGCGTTTGACTCATCGACGGCAAGCTGGGAACAGAGTCATCAGTCACCGGAATTTGGAAAGATACAGAGACTAGTGTCATGGAACAACGTCGG 650 660 670 680 690 700 710 720 730 740 810 820 830 840 850 860 870 880 890 900 AT1G53 AGCAGCTGAATCCGCCGGAAGTACCGGAGGATTTGTGTTTGCTTCTCCGTCGTCGTTGCATCCAGTTTATAGCCAAAGTCAGCTTTTATCACAGAGGGGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_098 AGCAGCTGAATCCGCCGGAAGTACCGGAGGATTTGTGTTTGCTTCTCCGTCGTCGTTGCATCCAGTTTATAGCCAAAGTCAGCTTTTATCACAGAGGGGT 750 760 770 780 790 800 810 820 830 840 910 920 930 940 950 960 970 980 990 1000 AT1G53 CCCCTTCAGTCCATTAACACACCTATGATTCGTGCTTGGTTTGATCCTCACCATCATCATCATCATCATCAGCAGTCCATGACCACTGACGATCTCCACC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_098 CCCCTTCAGTCCATTAACACACCTATGATTCGTGCTTGGTTTGATCCTCACCATCATCATCATCATCATCAGCAGTCCATGACCACTGACGATCTCCACC 850 860 870 880 890 900 910 920 930 940 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT1G53 ATCATCATCCCTACCATATCCCTCCCGGGATTCACCAATCTGCTATTCCAGGCATTGCATTTGCTTCAAGTGGTGAATTCTCCGGTTTTCGTATACCAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_098 ATCATCATCCCTACCATATCCCTCCCGGGATTCACCAATCTGCTATTCCAGGCATTGCATTTGCTTCAAGTGGTGAATTCTCCGGTTTTCGTATACCAGC 950 960 970 980 990 1000 1010 1020 1030 1040 1110 1120 1130 1140 1150 1160 1170 AT1G53 ACGGTTTCAAGGCGAACAAGAGGAGCACGGCGGCGACAACAAGCCGTCCTCTGCTTCATCCGATTCTCGCCAT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_098 ACGGTTTCAAGGCGAACAAGAGGAGCACGGCGGCGACAACAAGCCGTCCTCTGCTTCATCCGATTCTCGCCAT 1050 1060 1070 1080 1090 1100 1110 10 20 30 40 50 60 70 80 90 100 AT1G53 MAPDNDHFLDSPSPPLLEMRHHQSATENGGGCGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_098 ------------------MRHHQSATENGGGCGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKA 10 20 30 40 50 60 70 80 110 120 130 140 150 160 170 180 190 200 AT1G53 KSAIDDLAQLPPWNPADTLRQHAAAAANAKPRKTKTLISPPPPQPEETEHHRIGEEEDNESSFLPASMDSDSIADTIKSFFPVASTQQSYHHQPPSRGNT ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_098 KSAIDDLAQLPPWNPADTLRQHAAAAANAKPRKAKTLISPPPPQPEETEHHRIGEEEDNESSFLPASMDSDSIADTIKSFFPVASTQQSYHHQPPSRGNT 90 100 110 120 130 140 150 160 170 180 210 220 230 240 250 260 270 280 290 300 AT1G53 QNQDLLRLSLQSFQNGPPFPNQTEPALFSGQSNNQLAFDSSTASWEQSHQSPEFGKIQRLVSWNNVGAAESAGSTGGFVFASPSSLHPVYSQSQLLSQRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_098 QNQDLLRLSLQSFQNGPPFPNQTEPALFSGQSNNQLAFDSSTASWEQSHQSPEFGKIQRLVSWNNVGAAESAGSTGGFVFASPSSLHPVYSQSQLLSQRG 190 200 210 220 230 240 250 260 270 280 310 320 330 340 350 360 370 380 390 AT1G53 PLQSINTPMIRAWFDPHHHHHHHQQSMTTDDLHHHHPYHIPPGIHQSAIPGIAFASSGEFSGFRIPARFQGEQEEHGGDNKPSSASSDSRH ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_098 PLQSINTPMIRAWFDPHHHHHHHQQSMTTDDLHHHHPYHIPPGIHQSAIPGIAFASSGEFSGFRIPARFQGEQEEHGGDNKPSSASSDSRH 290 300 310 320 330 340 350 360 370

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