◆◆◆RE_1009 detail◆◆◆

Code name	RE_1009
Locus	AT5G60970
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列100%一致
comment	0318_アミノ酸配列100%一致
sequence	>RE_1009_1080bp ATGAGATCAGGAGAATGTGATGAAGAGGAGATTCAAGCAAAGCAAGAAAGAGATCAAAATCAAAATCATCAAGTAAACTTAAACCACATGTTGCAACAAC AACAGCCGAGTTCGGTATCATCTTCAAGGCAATGGACTTCAGCTTTTAGGAATCCAAGAATCGTTCGAGTCTCAAGAACATTCGGTGGCAAAGACAGACA CAGCAAAGTATGTACAGTCCGTGGTCTTCGAGACCGGAGGATAAGGTTGTCCGTACCTACAGCTATTCAACTCTACGACCTTCAAGATCGATTAGGGCTG AGTCAGCCAAGCAAAGTCATTGATTGGTTACTCGAAGCAGCAAAAGATGACGTAGACAAGCTACCTCCTCTACAATTCCCACATGGATTTAACCAGATGT ATCCAAATCTCATCTTCGGAAACTCCGGGTTTGGAGAATCTCCATCTTCAACTACATCAACAACGTTTCCAGGAACCAATCTCGGGTTCTTAGAAAATTG GGATCTTGGTGGTTCTTCAAGAACAAGAGCAAGATTAACCGATACAACTACGACCCAAAGAGAAAGTTTTGATCTTGATAAAGGAAAATGGATCAAAAAC GACGAGAATAGTAATCAAGATCATCAAGGGTTTAACACCAATCATCAACAACAATTTCCTCTGACCAATCCGTACAACAACACTTCAGCTTATTACAACC TTGGACATCTTCAACAATCGTTAGACCAATCTGGTAATAACGTTACTGTCGCAATATCTAATGTTGCTGCTAATAATAACAATAATCTCAATTTGCATCC TCCTTCCTCGTCTGCCGGAGATGGATCTCAGCTTTTTTTCGGTCCTACTCCTCCGGCAATGAGCTCTCTATTCCCGACATACCCTTCGTTTCTTGGAGCT TCTCATCATCATCATGTCGTCGATGGAGCCGGTCATCTTCAGCTCTTTAGCTCGAATTCAAATACCGCATCGCAGCAACACATGATGCCGGGTAATACGA GTTTGATTAGACCATTTCATCATTTGATGAGCTCGAATCATGATACGGATCATCATAGTAGCGATAATGAATCAGATTCT >RE_1009_translated MRSGECDEEEIQAKQERDQNQNHQVNLNHMLQQQQPSSVSSSRQWTSAFRNPRIVRVSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGL SQPSKVIDWLLEAAKDDVDKLPPLQFPHGFNQMYPNLIFGNSGFGESPSSTTSTTFPGTNLGFLENWDLGGSSRTRARLTDTTTTQRESFDLDKGKWIKN DENSNQDHQGFNTNHQQQFPLTNPYNNTSAYYNLGHLQQSLDQSGNNVTVAISNVAANNNNNLNLHPPSSSAGDGSQLFFGPTPPAMSSLFPTYPSFLGA SHHHHVVDGAGHLQLFSSNSNTASQQHMMPGNTSLIRPFHHLMSSNHDTDHHSSDNESDS
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1079/1080 (99.9%)（アミノ酸配列で100%）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G60 ATGAGATCAGGAGAATGTGATGAAGAGGAGATTCAAGCAAAGCAAGAAAGAGATCAAAATCAAAATCATCAAGTAAACTTAAACCACATGTTGCAACAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_100 ATGAGATCAGGAGAATGTGATGAAGAGGAGATTCAAGCAAAGCAAGAAAGAGATCAAAATCAAAATCATCAAGTAAACTTAAACCACATGTTGCAACAAC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G60 AACAGCCGAGTTCGGTATCATCTTCAAGGCAATGGACTTCAGCTTTTAGGAATCCAAGAATCGTTCGAGTCTCAAGAACATTCGGTGGCAAAGACAGACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_100 AACAGCCGAGTTCGGTATCATCTTCAAGGCAATGGACTTCAGCTTTTAGGAATCCAAGAATCGTTCGAGTCTCAAGAACATTCGGTGGCAAAGACAGACA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G60 CAGCAAAGTATGTACAGTCCGTGGTCTTCGAGACCGGAGGATAAGGTTGTCCGTACCTACAGCTATTCAACTCTACGACCTTCAAGATCGATTAGGGCTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_100 CAGCAAAGTATGTACAGTCCGTGGTCTTCGAGACCGGAGGATAAGGTTGTCCGTACCTACAGCTATTCAACTCTACGACCTTCAAGATCGATTAGGGCTG 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G60 AGTCAGCCAAGCAAAGTCATTGATTGGTTACTCGAAGCAGCAAAAGATGACGTAGACAAGCTACCTCCTCTACAATTCCCACATGGATTTAACCAGATGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_100 AGTCAGCCAAGCAAAGTCATTGATTGGTTACTCGAAGCAGCAAAAGATGACGTAGACAAGCTACCTCCTCTACAATTCCCACATGGATTTAACCAGATGT 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G60 ATCCAAATCTCATCTTCGGAAACTCCGGGTTTGGAGAATCTCCATCTTCAACTACATCAACAACGTTTCCAGGAACCAATCTCGGGTTCTTGGAAAATTG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::: RE_100 ATCCAAATCTCATCTTCGGAAACTCCGGGTTTGGAGAATCTCCATCTTCAACTACATCAACAACGTTTCCAGGAACCAATCTCGGGTTCTTAGAAAATTG 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G60 GGATCTTGGTGGTTCTTCAAGAACAAGAGCAAGATTAACCGATACAACTACGACCCAAAGAGAAAGTTTTGATCTTGATAAAGGAAAATGGATCAAAAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_100 GGATCTTGGTGGTTCTTCAAGAACAAGAGCAAGATTAACCGATACAACTACGACCCAAAGAGAAAGTTTTGATCTTGATAAAGGAAAATGGATCAAAAAC 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G60 GACGAGAATAGTAATCAAGATCATCAAGGGTTTAACACCAATCATCAACAACAATTTCCTCTGACCAATCCGTACAACAACACTTCAGCTTATTACAACC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_100 GACGAGAATAGTAATCAAGATCATCAAGGGTTTAACACCAATCATCAACAACAATTTCCTCTGACCAATCCGTACAACAACACTTCAGCTTATTACAACC 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT5G60 TTGGACATCTTCAACAATCGTTAGACCAATCTGGTAATAACGTTACTGTCGCAATATCTAATGTTGCTGCTAATAATAACAATAATCTCAATTTGCATCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_100 TTGGACATCTTCAACAATCGTTAGACCAATCTGGTAATAACGTTACTGTCGCAATATCTAATGTTGCTGCTAATAATAACAATAATCTCAATTTGCATCC 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT5G60 TCCTTCCTCGTCTGCCGGAGATGGATCTCAGCTTTTTTTCGGTCCTACTCCTCCGGCAATGAGCTCTCTATTCCCGACATACCCTTCGTTTCTTGGAGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_100 TCCTTCCTCGTCTGCCGGAGATGGATCTCAGCTTTTTTTCGGTCCTACTCCTCCGGCAATGAGCTCTCTATTCCCGACATACCCTTCGTTTCTTGGAGCT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT5G60 TCTCATCATCATCATGTCGTCGATGGAGCCGGTCATCTTCAGCTCTTTAGCTCGAATTCAAATACCGCATCGCAGCAACACATGATGCCGGGTAATACGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_100 TCTCATCATCATCATGTCGTCGATGGAGCCGGTCATCTTCAGCTCTTTAGCTCGAATTCAAATACCGCATCGCAGCAACACATGATGCCGGGTAATACGA 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 AT5G60 GTTTGATTAGACCATTTCATCATTTGATGAGCTCGAATCATGATACGGATCATCATAGTAGCGATAATGAATCAGATTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_100 GTTTGATTAGACCATTTCATCATTTGATGAGCTCGAATCATGATACGGATCATCATAGTAGCGATAATGAATCAGATTCT 1010 1020 1030 1040 1050 1060 1070 1080 10 20 30 40 50 60 70 80 90 100 AT5G60 MRSGECDEEEIQAKQERDQNQNHQVNLNHMLQQQQPSSVSSSRQWTSAFRNPRIVRVSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_100 MRSGECDEEEIQAKQERDQNQNHQVNLNHMLQQQQPSSVSSSRQWTSAFRNPRIVRVSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGL 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G60 SQPSKVIDWLLEAAKDDVDKLPPLQFPHGFNQMYPNLIFGNSGFGESPSSTTSTTFPGTNLGFLENWDLGGSSRTRARLTDTTTTQRESFDLDKGKWIKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_100 SQPSKVIDWLLEAAKDDVDKLPPLQFPHGFNQMYPNLIFGNSGFGESPSSTTSTTFPGTNLGFLENWDLGGSSRTRARLTDTTTTQRESFDLDKGKWIKN 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G60 DENSNQDHQGFNTNHQQQFPLTNPYNNTSAYYNLGHLQQSLDQSGNNVTVAISNVAANNNNNLNLHPPSSSAGDGSQLFFGPTPPAMSSLFPTYPSFLGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_100 DENSNQDHQGFNTNHQQQFPLTNPYNNTSAYYNLGHLQQSLDQSGNNVTVAISNVAANNNNNLNLHPPSSSAGDGSQLFFGPTPPAMSSLFPTYPSFLGA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 AT5G60 SHHHHVVDGAGHLQLFSSNSNTASQQHMMPGNTSLIRPFHHLMSSNHDTDHHSSDNESDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_100 SHHHHVVDGAGHLQLFSSNSNTASQQHMMPGNTSLIRPFHHLMSSNHDTDHHSSDNESDS 310 320 330 340 350 360

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