| Code name | RE_1041 | |||
|---|---|---|---|---|
| Locus | AT1G31320 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.40%一致 | |||
| comment | 0115_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_1041_516bp ATGAAAGAAAGTAGCCGGAAGCAAGGAGCTGCGTCACCGTGTGCTGCGTGTAAGCTTTTGCGGCGGCGGTGCGCTCAAGATTGCGTTTTCTCGCCGTATT TTCCGGCCGATGAGCCTCAGAAATTTGCTAATGTTCATAGAGTGTTCGGTGCTAGCAACGTCAACAAGATGCTTCAGGAATTACCAATCCACCAGCGAGG GGACGCTGTGAGCAGCATGGTTTACGAGGCTAATGCAAGAGTGCGGGATCCGGTTTACGGTTGCGTTGGGGCAATTTCGTCCCTCCAGCAACAGATAGAT GTGTTGCAAGCTCAGCTAGCTCTAGCTCAAGCTGAGGTGGTGCATCTACGTGTACGCCAGTCGACTAATTTCCCAGGGCACGGACTATGCCCGGATAGTC CGAGTAGCAGCGGGTCACCGTCTTCGAAGCAAGTGAGTCCACAGGACAACAAGGGCATGTTTAGCCATACGGACATTGTGGATGAAGCCAGTTTGGGAGA GTCTATGTGGTCTTGC >RE_1041_translated MKESSRKQGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQID VLQAQLALAQAEVVHLRVRQSTNFPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHTDIVDEASLGESMWSC |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 515/516 (99.8%)（アミノ酸配列で171/172 (99.4%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G31 ATGAAAGAAAGTAGCCGGAAGCAAGGAGCTGCGTCACCGTGTGCTGCGTGTAAGCTTTTGCGGCGGCGGTGCGCTCAAGATTGCGTTTTCTCGCCGTATT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_104 ATGAAAGAAAGTAGCCGGAAGCAAGGAGCTGCGTCACCGTGTGCTGCGTGTAAGCTTTTGCGGCGGCGGTGCGCTCAAGATTGCGTTTTCTCGCCGTATT
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G31 TTCCGGCCGATGAGCCTCAGAAATTTGCTAATGTTCATAGAGTGTTCGGTGCTAGCAACGTCAACAAGATGCTTCAGGAATTACCAATCCACCAGCGAGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_104 TTCCGGCCGATGAGCCTCAGAAATTTGCTAATGTTCATAGAGTGTTCGGTGCTAGCAACGTCAACAAGATGCTTCAGGAATTACCAATCCACCAGCGAGG
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT1G31 GGACGCTGTGAGCAGCATGGTTTACGAGGCTAATGCAAGAGTGCGGGATCCGGTTTACGGTTGCGTTGGGGCAATTTCGTCCCTCCAGCAACAGATAGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_104 GGACGCTGTGAGCAGCATGGTTTACGAGGCTAATGCAAGAGTGCGGGATCCGGTTTACGGTTGCGTTGGGGCAATTTCGTCCCTCCAGCAACAGATAGAT
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT1G31 GTGTTGCAAGCTCAGCTAGCTCTAGCTCAAGCTGAGGTGGTGCATCTACGTGTACGCCAGTCGACTAATTTCCCAGGGCACGGACTATGCCCGGATAGTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_104 GTGTTGCAAGCTCAGCTAGCTCTAGCTCAAGCTGAGGTGGTGCATCTACGTGTACGCCAGTCGACTAATTTCCCAGGGCACGGACTATGCCCGGATAGTC
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT1G31 CGAGTAGCAGCGGGTCACCGTCTTCGAAGCAAGTGAGTCCACAGGACAACAAGGGCATGTTTAGCCATATGGACATTGTGGATGAAGCCAGTTTGGGAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
RE_104 CGAGTAGCAGCGGGTCACCGTCTTCGAAGCAAGTGAGTCCACAGGACAACAAGGGCATGTTTAGCCATACGGACATTGTGGATGAAGCCAGTTTGGGAGA
410 420 430 440 450 460 470 480 490 500
510
AT1G31 GTCTATGTGGTCTTGC
::::::::::::::::
RE_104 GTCTATGTGGTCTTGC
510
10 20 30 40 50 60 70 80 90 100
AT1G31 MKESSRKQGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_104 MKESSRKQGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQID
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170
AT1G31 VLQAQLALAQAEVVHLRVRQSTNFPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWSC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
RE_104 VLQAQLALAQAEVVHLRVRQSTNFPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHTDIVDEASLGESMWSC
110 120 130 140 150 160 170
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