◆◆◆RE_1045 detail◆◆◆

Code name	RE_1045
Locus	AT1G78080
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.70%一致
comment	0115_アミノ酸配列70%以上一致/0422_アミノ酸配列70%以上一致
sequence	>RE_1045_1002bp ATGGCAGCTGCTATGAATTTGTACACTTGTAGCAGATCGTTTCAAGACTCTGGTGGTGAACTCATGGACGCGCTTGTACCTTTTATCAAAAGCGTTTCCG ATTCTCCTTCTTCTTCTTCTGCAGCGTCTGCGTCTGCGTTTCTTCACCCCTCTGCGTTTTCTCTCCCTCCTCTCCCCGGTTATTACCCGGATTCAACGTT CTTGACCCAACCGTTTTCATACGGGTCGGATCTTCAACAAACCGGGTCATTAATCGGACTCAACAACCTCTCTTCTTCTCAGATCCACCAGATCCAGTCT CAGATCCATCATCCTCTTCCTCCGACGCATCACAACAACAACAACTCTTTCTCGAATCTTCTCAGCCCAAAGCCGTTGCTGATGAAGCAATCTGGAGTCG CTGGATCTTGTTTCGCTTACGGTTCAGGTGTTCCTTCGAAGCCGACGAAGCTTTACAGAGGTGTGAGGCAACGTCACTGGGGAAAATGGGTGGCTGAGAT CCGTTTGCCGAGAAATCGGACTCGTCTCTGGCTTGGGACTTTTGACACGGCGGAGGAAGCTGCGTTGGCCTATGATGAGGCGGCGTACAAGCTGCGCGGC GATTTCGCCCGGCTTAACTTCCCTAACCTACGTCATAACGGATCTCACATCGGAGGCGATTTCGGTGAATATAAACCTCTTCACTCCTCAGTCGACGCTA AGCTTGAAGCTATTTGTAAAAGCATGGCGGAGACTCAGAAACAGGACAAATCGACGAAATCATCGAAGAAACGTGAGAAGAAGGTTTCGTCGCCAGATCT ATCGGAGAAAGTGAAGGCGGAGGAGAATTCGGTTTCGATCGGTGGATCTCCACCGGTGACGGAGTTTGAAGAGTCCACCGCTGGATCTTCGCCGTTGTCG GACTTGACGTTCGCTGACCCGGAGGAGCCGCCGCAGTGGAACGAGACGTTCTCGTTGGAGAAGTATCCGTCGTACGAGATCGATTGGGATTCGATTCTAG CT >RE_1045_translated MAAAMNLYTCSRSFQDSGGELMDALVPFIKSVSDSPSSSSAASASAFLHPSAFSLPPLPGYYPDSTFLTQPFSYGSDLQQTGSLIGLNNLSSSQIHQIQS QIHHPLPPTHHNNNNSFSNLLSPKPLLMKQSGVAGSCFAYGSGVPSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDEAAYKLRG DFARLNFPNLRHNGSHIGGDFGEYKPLHSSVDAKLEAICKSMAETQKQDKSTKSSKKREKKVSSPDLSEKVKAEENSVSIGGSPPVTEFEESTAGSSPLS DLTFADPEEPPQWNETFSLEKYPSYEIDWDSILA
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1000/1002 (99.8%)（アミノ酸配列で333/334 (99.7%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT1G78 ATGGCAGCTGCTATGAATTTGTACACTTGTAGCAGATCGTTTCAAGACTCTGGTGGTGAACTCATGGACGCGCTTGTACCTTTTATCAAAAGCGTTTCCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_104 ATGGCAGCTGCTATGAATTTGTACACTTGTAGCAGATCGTTTCAAGACTCTGGTGGTGAACTCATGGACGCGCTTGTACCTTTTATCAAAAGCGTTTCCG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G78 ATTCTCCTTCTTCTTCTTCTGCAGCGTCTGCGTCTGCGTTTCTTCACCCCTCTGCGTTTTCTCTCCCTCCTCTCCCCGGTTATTACCCGGATTCAACGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_104 ATTCTCCTTCTTCTTCTTCTGCAGCGTCTGCGTCTGCGTTTCTTCACCCCTCTGCGTTTTCTCTCCCTCCTCTCCCCGGTTATTACCCGGATTCAACGTT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G78 CTTGACCCAACCGTTTTCATACGGGTCGGATCTTCAACAAACCGGGTCATTAATCGGACTCAACAACCTCTCTTCTTCTCAGATCCACCAGATCCAGTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_104 CTTGACCCAACCGTTTTCATACGGGTCGGATCTTCAACAAACCGGGTCATTAATCGGACTCAACAACCTCTCTTCTTCTCAGATCCACCAGATCCAGTCT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT1G78 CAGATCCATCATCCTCTTCCTCCGACGCATCACAACAACAACAACTCTTTCTCGAATCTTCTCAGCCCAAAGCCGTTACTGATGAAGCAATCTGGAGTCG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::: RE_104 CAGATCCATCATCCTCTTCCTCCGACGCATCACAACAACAACAACTCTTTCTCGAATCTTCTCAGCCCAAAGCCGTTGCTGATGAAGCAATCTGGAGTCG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT1G78 CTGGATCTTGTTTCGCTTACGGTTCAGGTGTTCCTTCGAAGCCGACGAAGCTTTACAGAGGTGTGAGGCAACGTCACTGGGGAAAATGGGTGGCTGAGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_104 CTGGATCTTGTTTCGCTTACGGTTCAGGTGTTCCTTCGAAGCCGACGAAGCTTTACAGAGGTGTGAGGCAACGTCACTGGGGAAAATGGGTGGCTGAGAT 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT1G78 CCGTTTGCCGAGAAATCGGACTCGTCTCTGGCTTGGGACTTTTGACACGGCGGAGGAAGCTGCGTTGGCCTATGATAAGGCGGCGTACAAGCTGCGCGGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: RE_104 CCGTTTGCCGAGAAATCGGACTCGTCTCTGGCTTGGGACTTTTGACACGGCGGAGGAAGCTGCGTTGGCCTATGATGAGGCGGCGTACAAGCTGCGCGGC 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT1G78 GATTTCGCCCGGCTTAACTTCCCTAACCTACGTCATAACGGATCTCACATCGGAGGCGATTTCGGTGAATATAAACCTCTTCACTCCTCAGTCGACGCTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_104 GATTTCGCCCGGCTTAACTTCCCTAACCTACGTCATAACGGATCTCACATCGGAGGCGATTTCGGTGAATATAAACCTCTTCACTCCTCAGTCGACGCTA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT1G78 AGCTTGAAGCTATTTGTAAAAGCATGGCGGAGACTCAGAAACAGGACAAATCGACGAAATCATCGAAGAAACGTGAGAAGAAGGTTTCGTCGCCAGATCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_104 AGCTTGAAGCTATTTGTAAAAGCATGGCGGAGACTCAGAAACAGGACAAATCGACGAAATCATCGAAGAAACGTGAGAAGAAGGTTTCGTCGCCAGATCT 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT1G78 ATCGGAGAAAGTGAAGGCGGAGGAGAATTCGGTTTCGATCGGTGGATCTCCACCGGTGACGGAGTTTGAAGAGTCCACCGCTGGATCTTCGCCGTTGTCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_104 ATCGGAGAAAGTGAAGGCGGAGGAGAATTCGGTTTCGATCGGTGGATCTCCACCGGTGACGGAGTTTGAAGAGTCCACCGCTGGATCTTCGCCGTTGTCG 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT1G78 GACTTGACGTTCGCTGACCCGGAGGAGCCGCCGCAGTGGAACGAGACGTTCTCGTTGGAGAAGTATCCGTCGTACGAGATCGATTGGGATTCGATTCTAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_104 GACTTGACGTTCGCTGACCCGGAGGAGCCGCCGCAGTGGAACGAGACGTTCTCGTTGGAGAAGTATCCGTCGTACGAGATCGATTGGGATTCGATTCTAG 910 920 930 940 950 960 970 980 990 1000 AT1G78 CT :: RE_104 CT 10 20 30 40 50 60 70 80 90 100 AT1G78 MAAAMNLYTCSRSFQDSGGELMDALVPFIKSVSDSPSSSSAASASAFLHPSAFSLPPLPGYYPDSTFLTQPFSYGSDLQQTGSLIGLNNLSSSQIHQIQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_104 MAAAMNLYTCSRSFQDSGGELMDALVPFIKSVSDSPSSSSAASASAFLHPSAFSLPPLPGYYPDSTFLTQPFSYGSDLQQTGSLIGLNNLSSSQIHQIQS 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G78 QIHHPLPPTHHNNNNSFSNLLSPKPLLMKQSGVAGSCFAYGSGVPSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::: RE_104 QIHHPLPPTHHNNNNSFSNLLSPKPLLMKQSGVAGSCFAYGSGVPSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDEAAYKLRG 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G78 DFARLNFPNLRHNGSHIGGDFGEYKPLHSSVDAKLEAICKSMAETQKQDKSTKSSKKREKKVSSPDLSEKVKAEENSVSIGGSPPVTEFEESTAGSSPLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_104 DFARLNFPNLRHNGSHIGGDFGEYKPLHSSVDAKLEAICKSMAETQKQDKSTKSSKKREKKVSSPDLSEKVKAEENSVSIGGSPPVTEFEESTAGSSPLS 210 220 230 240 250 260 270 280 290 300 310 320 330 AT1G78 DLTFADPEEPPQWNETFSLEKYPSYEIDWDSILA :::::::::::::::::::::::::::::::::: RE_104 DLTFADPEEPPQWNETFSLEKYPSYEIDWDSILA 310 320 330

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