◆◆◆RE_1082 detail◆◆◆

Code name	RE_1082
Locus	AT1G28050
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.80%一致
comment	0318_アミノ酸配列70%以上一致
sequence	>RE_1082_1299bp ATGAGTAGTTCGGAGAGAGTACCGTGCGATTTCTGCGGCGAGCGTACGGCGGTTTTGTTTTGTAGAGCCGATACGGCGAAGCTGTGTTTGCCTTGTGATC AGCAAGTTCACACGGCGAATCTGTTGTCGAGGAAGCACGTGCGATCTCAGATCTGCGATAATTGCGGTAACGAGCCAGTCTCTGTTCGGTGTTTCACCGA TAATCTGATTTTGTGTCAGGAGTGTGATTGGGATGTTCACGGAAGTTGTTCAGTTTCCGATGCTCATGTTCGATCCGCCGTGGAAGGTTTTTCCGGTTGT CCATCGGCGTTGGAGCTTGCTGCTTTATGGGGACTTGATTTGGAGCAAGGGAGGAAAGATGAAGAGAATCAAGTTCCGATGATGGCGATGATGATGGATA ATTTCGGGATGCAGTTGGATTCTTGGGTTTTGGGATCTAATGAATTGATTGTTCCCAGCGATACGACGTTTAAGAAGCGTGGATCTTGTGGATCTAGTTG TGGGAGGTATAAGCAGGTATTGTGTAAGCAGCTTGAGGAGTTGCTTAAGAGTGGTGTTGTCGGTGGTGATGGCGATGATGGTGATCGTGACCGTGATTGT GACCGTGAGGGTGCTTGTGATGGAGATGGAGATGGAGAAGCAGGAGAGGGGCTTATGGTTCCGGAGATGTCAGAGAGATTGAAATGGTCAAGAGATGTTG AGGAGATCAATGGTGGCGGAGGAGGAGGAGTTAACCAGCAGTGGAATGCTACTACTACTAATCCTAGTGGTGGCCAGAGTTCTCAGATATGGGATTTTAA CTTGGGACAGTCACGGGGACCTGAGGATACGAGTCGAGTGGAAGCTGCATATGTAGGGAAAGGTGCTGCTTCTTCATTCACAATCAACAATTTTGTTGAC CATATGAATGAAACTTGTTCCACTAATGTGAAAGGTGTCAAAGAGATTAAAAAGGATGACTACAAGCGATCAACTTCAGGCCAGGTACAACCAACAAAAT CTGAGAGCAACAATCGTCCAATTACCTTTGGCTCTGAGAAAGGTTCGAACTCCTCCAGTGACTTGCATTTCACAGAGCATATTGCTGGAACTAGTTGTAA GACCACAAGACTAGTTGCAGCTAAGGCTGATCTGGAGCGGCTGGCTCAGAACAGAGGAGATGCAATGCAGCGTTACAAGGAAAAGAGGAAGACACGGAGA TATGATAAGACCATAAGGTATGAATCGAGGAAGGCAAGAGCTGACACTAGGTTGCGTGTCAGAGGCAGATTTGTGAAAGCTAGTGAAGCTCCTTACCCT >RE_1082_translated MSSSERVPCDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSVRCFTDNLILCQECDWDVHGSCSVSDAHVRSAVEGFSGC PSALELAALWGLDLEQGRKDEENQVPMMAMMMDNFGMQLDSWVLGSNELIVPSDTTFKKRGSCGSSCGRYKQVLCKQLEELLKSGVVGGDGDDGDRDRDC DREGACDGDGDGEAGEGLMVPEMSERLKWSRDVEEINGGGGGGVNQQWNATTTNPSGGQSSQIWDFNLGQSRGPEDTSRVEAAYVGKGAASSFTINNFVD HMNETCSTNVKGVKEIKKDDYKRSTSGQVQPTKSESNNRPITFGSEKGSNSSSDLHFTEHIAGTSCKTTRLVAAKADLERLAQNRGDAMQRYKEKRKTRR YDKTIRYESRKARADTRLRVRGRFVKASEAPYP
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1298/1299 (99.9%)（アミノ酸配列で432/433 (99.8%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT1G28 ATGAGTAGTTCGGAGAGAGTACCGTGCGATTTCTGCGGCGAGCGTACGGCGGTTTTGTTTTGTAGAGCCGATACGGCGAAGCTGTGTTTGCCTTGTGATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_108 ATGAGTAGTTCGGAGAGAGTACCGTGCGATTTCTGCGGCGAGCGTACGGCGGTTTTGTTTTGTAGAGCCGATACGGCGAAGCTGTGTTTGCCTTGTGATC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G28 AGCAAGTTCACACGGCGAATCTGTTGTCGAGGAAGCACGTGCGATCTCAGATCTGCGATAATTGCGGTAACGAGCCAGTCTCTGTTCGGTGTTTCACCGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_108 AGCAAGTTCACACGGCGAATCTGTTGTCGAGGAAGCACGTGCGATCTCAGATCTGCGATAATTGCGGTAACGAGCCAGTCTCTGTTCGGTGTTTCACCGA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G28 TAATCTGATTTTGTGTCAGGAGTGTGATTGGGATGTTCACGGAAGTTGTTCAGTTTCCGATGCTCATGTTCGATCCGCCGTGGAAGGTTTTTCCGGTTGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_108 TAATCTGATTTTGTGTCAGGAGTGTGATTGGGATGTTCACGGAAGTTGTTCAGTTTCCGATGCTCATGTTCGATCCGCCGTGGAAGGTTTTTCCGGTTGT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT1G28 CCATCGGCGTTGGAGCTTGCTGCTTTATGGGGACTTGATTTGGAGCAAGGGAGGAAAGATGAAGAGAATCAAGTTCCGATGATGGCGATGATGATGGATA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_108 CCATCGGCGTTGGAGCTTGCTGCTTTATGGGGACTTGATTTGGAGCAAGGGAGGAAAGATGAAGAGAATCAAGTTCCGATGATGGCGATGATGATGGATA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT1G28 ATTTCGGGATGCAGTTGGATTCTTGGGTTTTGGGATCTAATGAATTGATTGTTCCCAGCGATACGACGTTTAAGAAGCGTGGATCTTGTGGATCTAGTTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_108 ATTTCGGGATGCAGTTGGATTCTTGGGTTTTGGGATCTAATGAATTGATTGTTCCCAGCGATACGACGTTTAAGAAGCGTGGATCTTGTGGATCTAGTTG 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT1G28 TGGGAGGTATAAGCAGGTATTGTGTAAGCAGCTTGAGGAGTTGCTTAAGAGTGGTGTTGTCGGTGGTGATGGCGATGATGGTGATCGTGACCGTGATTGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_108 TGGGAGGTATAAGCAGGTATTGTGTAAGCAGCTTGAGGAGTTGCTTAAGAGTGGTGTTGTCGGTGGTGATGGCGATGATGGTGATCGTGACCGTGATTGT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT1G28 GACCGTGAGGGTGCTTGTGATGGAGATGGAGATGGAGAAGCAGGAGAGGGGCTTATGGTTCCGGAGATGTCAGAGAGATTGAAATGGTCAAGAGATGTTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_108 GACCGTGAGGGTGCTTGTGATGGAGATGGAGATGGAGAAGCAGGAGAGGGGCTTATGGTTCCGGAGATGTCAGAGAGATTGAAATGGTCAAGAGATGTTG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT1G28 AGGAGATCAATGGTGGCGGAGGAGGAGGAGTTAACCAGCAGTGGAATGCTACTACTACTAATCCTAGTGGTGGCCAGAGTTCTCAGATATGGGATTTTAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_108 AGGAGATCAATGGTGGCGGAGGAGGAGGAGTTAACCAGCAGTGGAATGCTACTACTACTAATCCTAGTGGTGGCCAGAGTTCTCAGATATGGGATTTTAA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT1G28 CTTGGGACAGTCACGGGGACCTGAGGATACGAGTCGAGTGGAAGCTGCATATGTAGGGAAAGGTGCTGCTTCTTCATTCACAATCAACAATTTTGTTGAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_108 CTTGGGACAGTCACGGGGACCTGAGGATACGAGTCGAGTGGAAGCTGCATATGTAGGGAAAGGTGCTGCTTCTTCATTCACAATCAACAATTTTGTTGAC 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT1G28 CATATGAATGAAACTTGTTCCACTAATGTGAAAGGTGTCAAAGAGATTAAAAAGGATGACTACAAGCGATCAACTTCAGGCCAGGTACAACCAACAAAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_108 CATATGAATGAAACTTGTTCCACTAATGTGAAAGGTGTCAAAGAGATTAAAAAGGATGACTACAAGCGATCAACTTCAGGCCAGGTACAACCAACAAAAT 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT1G28 CTGAGAGCAACAATCGTCCAATTACCTTTGGCTCTGAGAAAGGTTCGAACTCCTCCAGTGACTTGCATTTCACAGAGCATATTGCTGGAACTAGTTGTAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_108 CTGAGAGCAACAATCGTCCAATTACCTTTGGCTCTGAGAAAGGTTCGAACTCCTCCAGTGACTTGCATTTCACAGAGCATATTGCTGGAACTAGTTGTAA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT1G28 GACCACAAGACTAGTTGCAACTAAGGCTGATCTGGAGCGGCTGGCTCAGAACAGAGGAGATGCAATGCAGCGTTACAAGGAAAAGAGGAAGACACGGAGA ::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_108 GACCACAAGACTAGTTGCAGCTAAGGCTGATCTGGAGCGGCTGGCTCAGAACAGAGGAGATGCAATGCAGCGTTACAAGGAAAAGAGGAAGACACGGAGA 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 AT1G28 TATGATAAGACCATAAGGTATGAATCGAGGAAGGCAAGAGCTGACACTAGGTTGCGTGTCAGAGGCAGATTTGTGAAAGCTAGTGAAGCTCCTTACCCT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_108 TATGATAAGACCATAAGGTATGAATCGAGGAAGGCAAGAGCTGACACTAGGTTGCGTGTCAGAGGCAGATTTGTGAAAGCTAGTGAAGCTCCTTACCCT 1210 1220 1230 1240 1250 1260 1270 1280 1290 10 20 30 40 50 60 70 80 90 100 AT1G28 MSSSERVPCDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSVRCFTDNLILCQECDWDVHGSCSVSDAHVRSAVEGFSGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_108 MSSSERVPCDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSVRCFTDNLILCQECDWDVHGSCSVSDAHVRSAVEGFSGC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G28 PSALELAALWGLDLEQGRKDEENQVPMMAMMMDNFGMQLDSWVLGSNELIVPSDTTFKKRGSCGSSCGRYKQVLCKQLEELLKSGVVGGDGDDGDRDRDC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_108 PSALELAALWGLDLEQGRKDEENQVPMMAMMMDNFGMQLDSWVLGSNELIVPSDTTFKKRGSCGSSCGRYKQVLCKQLEELLKSGVVGGDGDDGDRDRDC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G28 DREGACDGDGDGEAGEGLMVPEMSERLKWSRDVEEINGGGGGGVNQQWNATTTNPSGGQSSQIWDFNLGQSRGPEDTSRVEAAYVGKGAASSFTINNFVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_108 DREGACDGDGDGEAGEGLMVPEMSERLKWSRDVEEINGGGGGGVNQQWNATTTNPSGGQSSQIWDFNLGQSRGPEDTSRVEAAYVGKGAASSFTINNFVD 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT1G28 HMNETCSTNVKGVKEIKKDDYKRSTSGQVQPTKSESNNRPITFGSEKGSNSSSDLHFTEHIAGTSCKTTRLVATKADLERLAQNRGDAMQRYKEKRKTRR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: RE_108 HMNETCSTNVKGVKEIKKDDYKRSTSGQVQPTKSESNNRPITFGSEKGSNSSSDLHFTEHIAGTSCKTTRLVAAKADLERLAQNRGDAMQRYKEKRKTRR 310 320 330 340 350 360 370 380 390 400 410 420 430 AT1G28 YDKTIRYESRKARADTRLRVRGRFVKASEAPYP ::::::::::::::::::::::::::::::::: RE_108 YDKTIRYESRKARADTRLRVRGRFVKASEAPYP 410 420 430

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