| Code name | RE_1083 | |||
|---|---|---|---|---|
| Locus | AT1G49130 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列88.30%一致 | |||
| comment | 0420_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_1083_864bp ATGACAAGTCACCAAAATATCAAAATTTCAGAAAAAATTATGATTTCAAAGTACCAAGAAGATGTCAAGCAGCCACGAGCTTGCGAACTTTGTCTGAACA AACACGCAGTTTGGTACTGTGCCTCCGATGATGCTTTCTTGTGCCATGTTTGTGATGAATCAGTGCATTCTGCAAACCATGTAGCGACAAAACACGAGAG AGTTTGTCTTAGAACAAACGAGATATCGAATGATGTGCGTGGGGGAACAACATTAACCTCGGTTTGGCACAGCGGGTTTCGAAGAAAAGCAAGAACTCCT AGATCTCGGTATGAGAAAAAGCCACAACAAAAGATAGATGATGAGAGAAGAAGGGAAGATCCTCGTGTTCCCGAGATTGGAGGCGAAGTGATGTTTTTCA TACCAGAAGCAAATGATGATGATATGACTTCTCTTGTGCCAGAGTTTGAGGGATTCACAGAGATGGGATTCTTCTTGAGCAACCACAATGGTACTGAAGA AACAACGAAACAATTCAACTTTGAAGAAGAAGCTGACACAATGGAGGATCTATATTACAATGGAGAAGAAGAAGATAAAACTGATGGAGCTGAAGCATGT CCTGGACAATATTTGATGAGCTGCAAGAAAGATTACGACAATGTCATAACGGTTTCAGAAAAGACAGAAGAAATTGAAGATTGTTATGAGAATAATGCAA GGCATAGACTGAATTACGAAAATGTTATAGCAGCTTGGGATAAACAAGAATCTCCTAGAGATGTAAAAAACAACACAAGTAGCTTCCAGCTAGTTCCTCC AGGGATAGAGGAGAAGAGAGTAAGAAGTGAGAGAGAAGCTAGAGTTTGGAGATACAGAGATAAA >RE_1083_translated MTSHQNIKISEKIMISKYQEDVKQPRACELCLNKHAVWYCASDDAFLCHVCDESVHSANHVATKHERVCLRTNEISNDVRGGTTLTSVWHSGFRRKARTP RSRYEKKPQQKIDDERRREDPRVPEIGGEVMFFIPEANDDDMTSLVPEFEGFTEMGFFLSNHNGTEETTKQFNFEEEADTMEDLYYNGEEEDKTDGAEAC PGQYLMSCKKDYDNVITVSEKTEEIEDCYENNARHRLNYENVIAAWDKQESPRDVKNNTSSFQLVPPGIEEKRVRSEREARVWRYRDK |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 864/978 (88.3%)（アミノ酸配列で288/326 (88.3%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G49 ATGACAAGTCACCAAAATATCAAAATTTCAGAAAAAATTATGATTTCAAAGTACCAAGAAGATGTCAAGCAGCCACGAGCTTGCGAACTTTGTCTGAACA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 ATGACAAGTCACCAAAATATCAAAATTTCAGAAAAAATTATGATTTCAAAGTACCAAGAAGATGTCAAGCAGCCACGAGCTTGCGAACTTTGTCTGAACA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G49 AACACGCAGTTTGGTACTGTGCCTCCGATGATGCTTTCTTGTGCCATGTTTGTGATGAATCAGTGCATTCTGCAAACCATGTAGCGACAAAACACGAGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 AACACGCAGTTTGGTACTGTGCCTCCGATGATGCTTTCTTGTGCCATGTTTGTGATGAATCAGTGCATTCTGCAAACCATGTAGCGACAAAACACGAGAG
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT1G49 AGTTTGTCTTAGAACAAACGAGATATCGAATGATGTGCGTGGGGGAACAACATTAACCTCGGTTTGGCACAGCGGGTTTCGAAGAAAAGCAAGAACTCCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 AGTTTGTCTTAGAACAAACGAGATATCGAATGATGTGCGTGGGGGAACAACATTAACCTCGGTTTGGCACAGCGGGTTTCGAAGAAAAGCAAGAACTCCT
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT1G49 AGATCTCGGTATGAGAAAAAGCCACAACAAAAGATAGATGATGAGAGAAGAAGGGAAGATCCTCGTGTTCCCGAGATTGGAGGCGAAGTGATGTTTTTCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 AGATCTCGGTATGAGAAAAAGCCACAACAAAAGATAGATGATGAGAGAAGAAGGGAAGATCCTCGTGTTCCCGAGATTGGAGGCGAAGTGATGTTTTTCA
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT1G49 TACCAGAAGCAAATGATGATGATATGACTTCTCTTGTGCCAGAGTTTGAGGGATTCACAGAGATGGGATTCTTCTTGAGCAACCACAATGGTACTGAAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 TACCAGAAGCAAATGATGATGATATGACTTCTCTTGTGCCAGAGTTTGAGGGATTCACAGAGATGGGATTCTTCTTGAGCAACCACAATGGTACTGAAGA
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT1G49 AACAACGAAACAATTCAACTTTGAAGAAGAAGCTGACACAATGGAGGATCTATATTACAATGGAGAAGAAGAAGATAAAACTGATGGAGCTGAAGCATGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 AACAACGAAACAATTCAACTTTGAAGAAGAAGCTGACACAATGGAGGATCTATATTACAATGGAGAAGAAGAAGATAAAACTGATGGAGCTGAAGCATGT
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT1G49 CCTGGACAATATTTGATGAGCTGCAAGAAAGATTACGACAATGTCATAACGGTTTCAGAAAAGACAGAAGAAATTGAAGATTGTTATGAGAATAATGCAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 CCTGGACAATATTTGATGAGCTGCAAGAAAGATTACGACAATGTCATAACGGTTTCAGAAAAGACAGAAGAAATTGAAGATTGTTATGAGAATAATGCAA
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780 790 800
AT1G49 GGCATAGACTGAATTACGAAAATGTTATAGCAGCTTGGGATAAACAAGAATCTCCTAGAGATGTAAAAAACAACACAAGTAGCTTCCAGCTAGTTCCTCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 GGCATAGACTGAATTACGAAAATGTTATAGCAGCTTGGGATAAACAAGAATCTCCTAGAGATGTAAAAAACAACACAAGTAGCTTCCAGCTAGTTCCTCC
710 720 730 740 750 760 770 780 790 800
810 820 830 840 850 860 870 880 890 900
AT1G49 AGGGATAGAGGAGAAGAGAGTAAGAAGTGAGAGAGAAGCTAGAGTTTGGAGATACAGAGATAAAAGGAAGAATCGTTTGTTCGAGAAGAAGATAAGGTAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 AGGGATAGAGGAGAAGAGAGTAAGAAGTGAGAGAGAAGCTAGAGTTTGGAGATACAGAGATAAA------------------------------------
810 820 830 840 850 860
910 920 930 940 950 960 970
AT1G49 GAGGTTAGAAAGGTTAACGCCGACAAAAGGCCGAGAATGAAAGGTCGATTTGTCCGACGATCTTTAGCCATCGACTCT
RE_108 ------------------------------------------------------------------------------
10 20 30 40 50 60 70 80 90 100
AT1G49 MTSHQNIKISEKIMISKYQEDVKQPRACELCLNKHAVWYCASDDAFLCHVCDESVHSANHVATKHERVCLRTNEISNDVRGGTTLTSVWHSGFRRKARTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 MTSHQNIKISEKIMISKYQEDVKQPRACELCLNKHAVWYCASDDAFLCHVCDESVHSANHVATKHERVCLRTNEISNDVRGGTTLTSVWHSGFRRKARTP
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G49 RSRYEKKPQQKIDDERRREDPRVPEIGGEVMFFIPEANDDDMTSLVPEFEGFTEMGFFLSNHNGTEETTKQFNFEEEADTMEDLYYNGEEEDKTDGAEAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 RSRYEKKPQQKIDDERRREDPRVPEIGGEVMFFIPEANDDDMTSLVPEFEGFTEMGFFLSNHNGTEETTKQFNFEEEADTMEDLYYNGEEEDKTDGAEAC
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT1G49 PGQYLMSCKKDYDNVITVSEKTEEIEDCYENNARHRLNYENVIAAWDKQESPRDVKNNTSSFQLVPPGIEEKRVRSEREARVWRYRDKRKNRLFEKKIRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 PGQYLMSCKKDYDNVITVSEKTEEIEDCYENNARHRLNYENVIAAWDKQESPRDVKNNTSSFQLVPPGIEEKRVRSEREARVWRYRDK------------
210 220 230 240 250 260 270 280
310 320
AT1G49 EVRKVNADKRPRMKGRFVRRSLAIDS
RE_108 --------------------------
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