| Code name | RE_1085 | |||
|---|---|---|---|---|
| Locus | AT1G68190 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.40%一致 | |||
| comment | 0422_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_1085_1068bp ATGTTATGTATAATAATAATTGAGAATATGGAAAGAGTATGTGAGTTTTGTAAAGCGTATAGAGCAGTGGTTTATTGTATAGCTGATACAGCAAATCTTT GTTTAACATGTGATGCAAAGGTTCATTCAGCTAATTCACTCTCGGGACGGCGTTTACGTACGGTTTTATGTGATTCTTGTAAGAATCAGCCTTGTGTTGT TCGATGTTTTGACCATAAAATGTTTCTTTGCCATGGATGTAATGATAAGTTTCATGGTGGTGGCTCTTCTGAGCATCGTAGAAGGGATTTGAGGTGTTAT ACGGGTTGTCCTCCTGCTAAAGATTTCGCGGTTATGTGGGGTTTTCGAGTTATGGATGACGATGATGATGTTTCGTTAGAGCAATCTTTTCGAATGGTTA AACCTAAGGTGCAAAGAGAAGGTGGTTTTATCTTGGAACAGATTCTTGAATTGGAGAAGGTTCAGCTCAGGGAAGAGAATGGTAGTTCTTCCTTGACAGA ACGAGGTGATCCATCTCCATTGGAGCTTCCTAAGAAACCCGAAGAACAGTTAATCGATCTTCCGCAGACCGGAAAAGAGCTGGTTGTTGATTTTTCACAC TTGTCCTCATCTTCCACACTTGGTGATTCCTTTTGGGAATGCAAAAGTCCATACAATAAGAACAATCAGTTGTGGCATCAAAATATACAAGACATTGGAG TATGTGAAGATACAATCTGCAGTGACGATGACTTCCAAATACCTGACATTGATCTCACTTTCCGGAACTTTGAAGAGCAATTTGGAGCTGATCCTGAGCC AATTGCAGATAGTAACAACGTGTTCTTTGTTTCTTCCCTTGACAAATCACATGAGATGAAGACATTTTCTTCTTCATTCAATAATCCCATATTTGCACCT AAACCAGCTTCATCAGCTATCTCATTCTCAAGCAGTGAAACCGATAACCCTTATAGTCACTCAGAGGAAGTAATCTCATTTTGTCCCTCCCTCTCTAACA ATACACGTCAAAAGGTCATCACAAGGCTCAAGGAGAAGAAGAGAGCAAGAGTGGAGGAGAAAAAAGCT >RE_1085_translated MLCIIIIENMERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRRLRTVLCDSCKNQPCVVRCFDHKMFLCHGCNDKFHGGGSSEHRRRDLRCY TGCPPAKDFAVMWGFRVMDDDDDVSLEQSFRMVKPKVQREGGFILEQILELEKVQLREENGSSSLTERGDPSPLELPKKPEEQLIDLPQTGKELVVDFSH LSSSSTLGDSFWECKSPYNKNNQLWHQNIQDIGVCEDTICSDDDFQIPDIDLTFRNFEEQFGADPEPIADSNNVFFVSSLDKSHEMKTFSSSFNNPIFAP KPASSAISFSSSETDNPYSHSEEVISFCPSLSNNTRQKVITRLKEKKRARVEEKKA |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1066/1068 (99.8%)（アミノ酸配列で354/356 (99.4%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G68 ATGTTATGTATAATAATAATTGAGAATATGGAAAGAGTATGTGAGTTTTGTAAAGCGTATAGAGCAGTGGTTTATTGTATAGCTGATACAGCAAATCTTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 ATGTTATGTATAATAATAATTGAGAATATGGAAAGAGTATGTGAGTTTTGTAAAGCGTATAGAGCAGTGGTTTATTGTATAGCTGATACAGCAAATCTTT
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G68 GTTTAACATGTGATGCAAAGGTTCATTCAGCTAATTCACTCTCGGGACGGCATTTACGTACGGTTTTATGTGATTCTTGTAAGAATCAGCCTTGTGTTGT
::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 GTTTAACATGTGATGCAAAGGTTCATTCAGCTAATTCACTCTCGGGACGGCGTTTACGTACGGTTTTATGTGATTCTTGTAAGAATCAGCCTTGTGTTGT
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT1G68 TCGATGTTTTGACCATAAAATGTTTCTTTGCCATGGATGTAATGATAAGTTTCATGGTGGTGGCTCTTCTGAGCATCGTAGAAGGGATTTGAGGTGTTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 TCGATGTTTTGACCATAAAATGTTTCTTTGCCATGGATGTAATGATAAGTTTCATGGTGGTGGCTCTTCTGAGCATCGTAGAAGGGATTTGAGGTGTTAT
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT1G68 ACGGGTTGTCCTCCTGCTAAAGATTTCGCGGTTATGTGGGGTTTTCGAGTTATGGATGACGATGATGATGTTTCGTTAGAGCAATCTTTTCGAATGGTTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 ACGGGTTGTCCTCCTGCTAAAGATTTCGCGGTTATGTGGGGTTTTCGAGTTATGGATGACGATGATGATGTTTCGTTAGAGCAATCTTTTCGAATGGTTA
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT1G68 AACCTAAGGTGCAAAGAGAAGGTGGTTTTATCTTGGAACAGATTCTTGAATTGGAGAAGGTTCAGCTCAGGGAAGAGAATGGTAGTTCTTCCTTGACAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 AACCTAAGGTGCAAAGAGAAGGTGGTTTTATCTTGGAACAGATTCTTGAATTGGAGAAGGTTCAGCTCAGGGAAGAGAATGGTAGTTCTTCCTTGACAGA
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT1G68 ACGAGGTGATCCATCTCCATTGGAGCTTCCTAAGAAACCCGAAGAACAGTTAATCGATCTTCCGCAGACCGGAAAAGAGCTGGTTGTTGATTTTTCACAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 ACGAGGTGATCCATCTCCATTGGAGCTTCCTAAGAAACCCGAAGAACAGTTAATCGATCTTCCGCAGACCGGAAAAGAGCTGGTTGTTGATTTTTCACAC
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT1G68 TTGTCCTCATCTTCCACACTTGGTGATTCCTTTTGGGAATGCAAAAGTCCATACAATAAGAACAATCAGTTGTGGCATCAAAATATACAAGACATTGGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 TTGTCCTCATCTTCCACACTTGGTGATTCCTTTTGGGAATGCAAAAGTCCATACAATAAGAACAATCAGTTGTGGCATCAAAATATACAAGACATTGGAG
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780 790 800
AT1G68 TATGTGAAGATACAATCTGCAGTGACGATGACTTCCAAATACCTGACATTGATCTCACTTTCCGGAACTTTGAAGAGCAATTTGGAGCTGATCCTGAGCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 TATGTGAAGATACAATCTGCAGTGACGATGACTTCCAAATACCTGACATTGATCTCACTTTCCGGAACTTTGAAGAGCAATTTGGAGCTGATCCTGAGCC
710 720 730 740 750 760 770 780 790 800
810 820 830 840 850 860 870 880 890 900
AT1G68 AATTGCAGATAGTAACAACGTGTTCTTTGTTTCTTCCCTTGACAAATCACATGAGATGAAGACATTTTCTTCTTCATTCAATAATCCCATATTTGCACCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 AATTGCAGATAGTAACAACGTGTTCTTTGTTTCTTCCCTTGACAAATCACATGAGATGAAGACATTTTCTTCTTCATTCAATAATCCCATATTTGCACCT
810 820 830 840 850 860 870 880 890 900
910 920 930 940 950 960 970 980 990 1000
AT1G68 AAACCAGCTTCATCAACTATCTCATTCTCAAGCAGTGAAACCGATAACCCTTATAGTCACTCAGAGGAAGTAATCTCATTTTGTCCCTCCCTCTCTAACA
::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 AAACCAGCTTCATCAGCTATCTCATTCTCAAGCAGTGAAACCGATAACCCTTATAGTCACTCAGAGGAAGTAATCTCATTTTGTCCCTCCCTCTCTAACA
910 920 930 940 950 960 970 980 990 1000
1010 1020 1030 1040 1050 1060
AT1G68 ATACACGTCAAAAGGTCATCACAAGGCTCAAGGAGAAGAAGAGAGCAAGAGTGGAGGAGAAAAAAGCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 ATACACGTCAAAAGGTCATCACAAGGCTCAAGGAGAAGAAGAGAGCAAGAGTGGAGGAGAAAAAAGCT
1010 1020 1030 1040 1050 1060
10 20 30 40 50 60 70 80 90 100
AT1G68 MLCIIIIENMERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKNQPCVVRCFDHKMFLCHGCNDKFHGGGSSEHRRRDLRCY
:::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 MLCIIIIENMERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRRLRTVLCDSCKNQPCVVRCFDHKMFLCHGCNDKFHGGGSSEHRRRDLRCY
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G68 TGCPPAKDFAVMWGFRVMDDDDDVSLEQSFRMVKPKVQREGGFILEQILELEKVQLREENGSSSLTERGDPSPLELPKKPEEQLIDLPQTGKELVVDFSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 TGCPPAKDFAVMWGFRVMDDDDDVSLEQSFRMVKPKVQREGGFILEQILELEKVQLREENGSSSLTERGDPSPLELPKKPEEQLIDLPQTGKELVVDFSH
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT1G68 LSSSSTLGDSFWECKSPYNKNNQLWHQNIQDIGVCEDTICSDDDFQIPDIDLTFRNFEEQFGADPEPIADSNNVFFVSSLDKSHEMKTFSSSFNNPIFAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 LSSSSTLGDSFWECKSPYNKNNQLWHQNIQDIGVCEDTICSDDDFQIPDIDLTFRNFEEQFGADPEPIADSNNVFFVSSLDKSHEMKTFSSSFNNPIFAP
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350
AT1G68 KPASSTISFSSSETDNPYSHSEEVISFCPSLSNNTRQKVITRLKEKKRARVEEKKA
::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 KPASSAISFSSSETDNPYSHSEEVISFCPSLSNNTRQKVITRLKEKKRARVEEKKA
310 320 330 340 350
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