| Code name | RE_1089 | |||
|---|---|---|---|---|
| Locus | AT2G21320 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.40%一致 | |||
| comment | 0115_アミノ酸配列70%以上一致/0420_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_1089_516bp ATGCGAATTTTGTGTGATGCTTGTGAGAGCGCCGCCGCTATCGTCTTTTGCGCCGCCGACGAAGCTGCCCTCTGTTGCTCCTGCGACGAAAAAGTTCATA AGTGCAACAAGCTGGCTAGTCGGCATCTTCGTGTAGGCTTAGCTGATCCGAGTAATGCACCAAGCTGTGACATATGCGAAAATGCACCCGCATTCTTTTA CTGTGAGATAGATGGTAGTTCCCTTTGTCTACAATGTGATATGGTGGTACATGTTGGTGGGAAGAGAACACATAGGCGGTTTCTATTACTGAGACAGAGA ATTGAGTTTCCAGGCGATAAGCCTAATCATGCTGACCAACTGGGACTACGGTGTCAAAAGGCTTCCTCTGGTCGTGGTCAAGAATCAAATGGGAATGGTG ATCATGATCATAGTATGATCGATCTTAACTCCAATCCTCAAAGAGTACACGAGCCTGGATCACATAACCAAGAGGAGGGTATTGATGTAAATAACGCAAA CAATCACGAGCATGAA >RE_1089_translated MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNAPSCDICENAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHRRFLLLRQR IEFPGDKPNHADQLGLRCQKASSGRGQESNGNGDHDHSMIDLNSNPQRVHEPGSHNQEEGIDVNNANNHEHE |
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| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 515/516 (99.8%)（アミノ酸配列で171/172 (99.4%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT2G21 ATGCGAATTTTGTGTGATGCTTGTGAGAGCGCCGCCGCTATCGTCTTTTGCGCCGCCGACGAAGCTGCCCTCTGTTGCTCCTGCGACGAAAAAGTTCATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 ATGCGAATTTTGTGTGATGCTTGTGAGAGCGCCGCCGCTATCGTCTTTTGCGCCGCCGACGAAGCTGCCCTCTGTTGCTCCTGCGACGAAAAAGTTCATA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT2G21 AGTGCAACAAGCTGGCTAGTCGGCATCTTCGTGTAGGCTTAGCTGATCCGAGTAATGCACCAAGCTGTGACATATGCGAAAATGCACCCGCATTCTTTTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 AGTGCAACAAGCTGGCTAGTCGGCATCTTCGTGTAGGCTTAGCTGATCCGAGTAATGCACCAAGCTGTGACATATGCGAAAATGCACCCGCATTCTTTTA
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT2G21 CTGTGAGATAGATGGTAGTTCCCTTTGTCTACAATGTGATATGGTGGTACATGTTGGTGGGAAGAGAACACATAGGCGGTTTCTATTACTGAGACAGAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 CTGTGAGATAGATGGTAGTTCCCTTTGTCTACAATGTGATATGGTGGTACATGTTGGTGGGAAGAGAACACATAGGCGGTTTCTATTACTGAGACAGAGA
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT2G21 ATTGAGTTTCCAGGCGATAAGCCTAATCATGCTGACCAACTGGGACTACGGTGTCAAAAGGCTTCCTCTGGTCGTGGTCAAGAATCAAATGGGAATGGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 ATTGAGTTTCCAGGCGATAAGCCTAATCATGCTGACCAACTGGGACTACGGTGTCAAAAGGCTTCCTCTGGTCGTGGTCAAGAATCAAATGGGAATGGTG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT2G21 ATCATGATCATAATATGATCGATCTTAACTCCAATCCTCAAAGAGTACACGAGCCTGGATCACATAACCAAGAGGAGGGTATTGATGTAAATAACGCAAA
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 ATCATGATCATAGTATGATCGATCTTAACTCCAATCCTCAAAGAGTACACGAGCCTGGATCACATAACCAAGAGGAGGGTATTGATGTAAATAACGCAAA
410 420 430 440 450 460 470 480 490 500
510
AT2G21 CAATCACGAGCATGAA
::::::::::::::::
RE_108 CAATCACGAGCATGAA
510
10 20 30 40 50 60 70 80 90 100
AT2G21 MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNAPSCDICENAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHRRFLLLRQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_108 MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNAPSCDICENAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHRRFLLLRQR
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170
AT2G21 IEFPGDKPNHADQLGLRCQKASSGRGQESNGNGDHDHNMIDLNSNPQRVHEPGSHNQEEGIDVNNANNHEHE
:::::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::
RE_108 IEFPGDKPNHADQLGLRCQKASSGRGQESNGNGDHDHSMIDLNSNPQRVHEPGSHNQEEGIDVNNANNHEHE
110 120 130 140 150 160 170
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