Code name | RE_1101 | |||
---|---|---|---|---|
Locus | AT4G39070 | |||
Forward primer | ||||
Reverse primer | ||||
Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
comment | 0229_アミノ酸配列100%一致 | |||
sequence |
>RE_1101_726bp ATGAAGATTTGGTGTGCTGTTTGTGATAAAGAAGAAGCTTCGGTGTTTTGTTGTGCGGATGAAGCAGCTCTTTGTAATGGTTGCGATCGCCATGTTCATT TCGCCAATAAACTAGCCGGGAAACATCTCCGGTTCTCTCTCACTTCTCCTACTTTCAAAGATGCTCCTCTTTGTGATATTTGCGGGGAGAGGCGTGCATT ATTATTTTGCCAAGAAGACAGAGCAATACTATGCAGAGAATGTGACATTCCAATACATCAAGCTAATGAGCACACTAAGAAACACAATAGATTCCTCCTT ACCGGCGTTAAGATCTCTGCCTCCCCGTCAGCCTACCCAAGAGCCTCCAATTCCAACTCTGCTGCTGCATTTGGTCGAGCCAAAACCCGACCAAAATCAG TATCGAGCGAGGTCCCGAGCTCGGCCTCCAATGAGGTATTTACGAGCTCTTCTTCGACGACCACGAGCAATTGCTATTATGGGATAGAAGAAAACTACCA TCACGTGAGCGATTCGGGGTCGGGATCGGGTTGTACAGGTAGTATATCCGAGTATTTGATGGAGACATTACCGGGTTGGAGAGTGGAGGATTTGCTTGAA CACCCTTCTTGTGTCTCCTATGAGGATAACATTATTACTAATAACAATAACAGTGAGTCCTATAGGGTTTATGATGGTTCTTCACAATTCCATCATCAAG GGTTTTGGGATCACAAACCCTTCTCT >RE_1101_translated MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDICGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLL TGVKISASPSAYPRASNSNSAAAFGRAKTRPKSVSSEVPSSASNEVFTSSSSTTTSNCYYGIEENYHHVSDSGSGSGCTGSISEYLMETLPGWRVEDLLE HPSCVSYEDNIITNNNNSESYRVYDGSSQFHHQGFWDHKPFS |
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Alignment |
◆CDS(TAIRver.9)_without_stop_codonとのalignment◆ 725/726 (99.9%)(アミノ酸配列で100%)一致しました。 10 20 30 40 50 60 70 80 90 100 AT4G39 ATGAAGATTTGGTGTGCTGTTTGTGATAAAGAAGAAGCTTCGGTGTTTTGTTGTGCGGATGAAGCAGCTCTTTGTAATGGTTGCGATCGCCATGTTCATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 ATGAAGATTTGGTGTGCTGTTTGTGATAAAGAAGAAGCTTCGGTGTTTTGTTGTGCGGATGAAGCAGCTCTTTGTAATGGTTGCGATCGCCATGTTCATT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G39 TCGCCAATAAACTAGCCGGGAAACATCTCCGGTTCTCTCTCACTTCTCCTACTTTCAAAGATGCTCCTCTTTGTGATATTTGCGGGGAGAGGCGTGCATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 TCGCCAATAAACTAGCCGGGAAACATCTCCGGTTCTCTCTCACTTCTCCTACTTTCAAAGATGCTCCTCTTTGTGATATTTGCGGGGAGAGGCGTGCATT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G39 ATTATTTTGCCAAGAAGACAGAGCAATACTATGCAGAGAATGTGACATTCCAATACATCAAGCTAATGAGCACACTAAGAAACACAATAGATTCCTCCTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 ATTATTTTGCCAAGAAGACAGAGCAATACTATGCAGAGAATGTGACATTCCAATACATCAAGCTAATGAGCACACTAAGAAACACAATAGATTCCTCCTT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G39 ACCGGCGTTAAGATCTCTGCCTCCCCGTCAGCCTACCCAAGAGCCTCCAATTCCAACTCTGCTGCTGCATTTGGTCGAGCCAAAACCCGACCAAAATCAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 ACCGGCGTTAAGATCTCTGCCTCCCCGTCAGCCTACCCAAGAGCCTCCAATTCCAACTCTGCTGCTGCATTTGGTCGAGCCAAAACCCGACCAAAATCAG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT4G39 TATCGAGCGAGGTCCCGAGCTCGGCCTCCAATGAGGTATTTACGAGCTCTTCTTCGACGACCACGAGCAATTGCTATTATGGGATAGAAGAAAACTACCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 TATCGAGCGAGGTCCCGAGCTCGGCCTCCAATGAGGTATTTACGAGCTCTTCTTCGACGACCACGAGCAATTGCTATTATGGGATAGAAGAAAACTACCA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT4G39 TCACGTGAGCGATTCGGGGTCGGGATCGGGTTGTACAGGTAGTATATCCGAGTATTTGATGGAGACATTACCGGGTTGGAGAGTGGAGGATTTGCTTGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 TCACGTGAGCGATTCGGGGTCGGGATCGGGTTGTACAGGTAGTATATCCGAGTATTTGATGGAGACATTACCGGGTTGGAGAGTGGAGGATTTGCTTGAA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT4G39 CACCCTTCTTGTGTCTCCTATGAGGATAACATTATTACTAATAACAATAACAGTGAGTCTTATAGGGTTTATGATGGTTCTTCACAATTCCATCATCAAG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::: RE_110 CACCCTTCTTGTGTCTCCTATGAGGATAACATTATTACTAATAACAATAACAGTGAGTCCTATAGGGTTTATGATGGTTCTTCACAATTCCATCATCAAG 610 620 630 640 650 660 670 680 690 700 710 720 AT4G39 GGTTTTGGGATCACAAACCCTTCTCT :::::::::::::::::::::::::: RE_110 GGTTTTGGGATCACAAACCCTTCTCT 710 720 10 20 30 40 50 60 70 80 90 100 AT4G39 MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDICGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDICGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLL 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G39 TGVKISASPSAYPRASNSNSAAAFGRAKTRPKSVSSEVPSSASNEVFTSSSSTTTSNCYYGIEENYHHVSDSGSGSGCTGSISEYLMETLPGWRVEDLLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 TGVKISASPSAYPRASNSNSAAAFGRAKTRPKSVSSEVPSSASNEVFTSSSSTTTSNCYYGIEENYHHVSDSGSGSGCTGSISEYLMETLPGWRVEDLLE 110 120 130 140 150 160 170 180 190 200 210 220 230 240 AT4G39 HPSCVSYEDNIITNNNNSESYRVYDGSSQFHHQGFWDHKPFS :::::::::::::::::::::::::::::::::::::::::: RE_110 HPSCVSYEDNIITNNNNSESYRVYDGSSQFHHQGFWDHKPFS 210 220 230 240 |