| Code name | RE_1101 | |||
|---|---|---|---|---|
| Locus | AT4G39070 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列100%一致 | |||
| comment | 0229_アミノ酸配列100%一致 | |||
| sequence |
>RE_1101_726bp ATGAAGATTTGGTGTGCTGTTTGTGATAAAGAAGAAGCTTCGGTGTTTTGTTGTGCGGATGAAGCAGCTCTTTGTAATGGTTGCGATCGCCATGTTCATT TCGCCAATAAACTAGCCGGGAAACATCTCCGGTTCTCTCTCACTTCTCCTACTTTCAAAGATGCTCCTCTTTGTGATATTTGCGGGGAGAGGCGTGCATT ATTATTTTGCCAAGAAGACAGAGCAATACTATGCAGAGAATGTGACATTCCAATACATCAAGCTAATGAGCACACTAAGAAACACAATAGATTCCTCCTT ACCGGCGTTAAGATCTCTGCCTCCCCGTCAGCCTACCCAAGAGCCTCCAATTCCAACTCTGCTGCTGCATTTGGTCGAGCCAAAACCCGACCAAAATCAG TATCGAGCGAGGTCCCGAGCTCGGCCTCCAATGAGGTATTTACGAGCTCTTCTTCGACGACCACGAGCAATTGCTATTATGGGATAGAAGAAAACTACCA TCACGTGAGCGATTCGGGGTCGGGATCGGGTTGTACAGGTAGTATATCCGAGTATTTGATGGAGACATTACCGGGTTGGAGAGTGGAGGATTTGCTTGAA CACCCTTCTTGTGTCTCCTATGAGGATAACATTATTACTAATAACAATAACAGTGAGTCCTATAGGGTTTATGATGGTTCTTCACAATTCCATCATCAAG GGTTTTGGGATCACAAACCCTTCTCT >RE_1101_translated MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDICGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLL TGVKISASPSAYPRASNSNSAAAFGRAKTRPKSVSSEVPSSASNEVFTSSSSTTTSNCYYGIEENYHHVSDSGSGSGCTGSISEYLMETLPGWRVEDLLE HPSCVSYEDNIITNNNNSESYRVYDGSSQFHHQGFWDHKPFS |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 725/726 (99.9%)（アミノ酸配列で100%）一致しました。
10 20 30 40 50 60 70 80 90 100
AT4G39 ATGAAGATTTGGTGTGCTGTTTGTGATAAAGAAGAAGCTTCGGTGTTTTGTTGTGCGGATGAAGCAGCTCTTTGTAATGGTTGCGATCGCCATGTTCATT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_110 ATGAAGATTTGGTGTGCTGTTTGTGATAAAGAAGAAGCTTCGGTGTTTTGTTGTGCGGATGAAGCAGCTCTTTGTAATGGTTGCGATCGCCATGTTCATT
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT4G39 TCGCCAATAAACTAGCCGGGAAACATCTCCGGTTCTCTCTCACTTCTCCTACTTTCAAAGATGCTCCTCTTTGTGATATTTGCGGGGAGAGGCGTGCATT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_110 TCGCCAATAAACTAGCCGGGAAACATCTCCGGTTCTCTCTCACTTCTCCTACTTTCAAAGATGCTCCTCTTTGTGATATTTGCGGGGAGAGGCGTGCATT
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT4G39 ATTATTTTGCCAAGAAGACAGAGCAATACTATGCAGAGAATGTGACATTCCAATACATCAAGCTAATGAGCACACTAAGAAACACAATAGATTCCTCCTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_110 ATTATTTTGCCAAGAAGACAGAGCAATACTATGCAGAGAATGTGACATTCCAATACATCAAGCTAATGAGCACACTAAGAAACACAATAGATTCCTCCTT
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT4G39 ACCGGCGTTAAGATCTCTGCCTCCCCGTCAGCCTACCCAAGAGCCTCCAATTCCAACTCTGCTGCTGCATTTGGTCGAGCCAAAACCCGACCAAAATCAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_110 ACCGGCGTTAAGATCTCTGCCTCCCCGTCAGCCTACCCAAGAGCCTCCAATTCCAACTCTGCTGCTGCATTTGGTCGAGCCAAAACCCGACCAAAATCAG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT4G39 TATCGAGCGAGGTCCCGAGCTCGGCCTCCAATGAGGTATTTACGAGCTCTTCTTCGACGACCACGAGCAATTGCTATTATGGGATAGAAGAAAACTACCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_110 TATCGAGCGAGGTCCCGAGCTCGGCCTCCAATGAGGTATTTACGAGCTCTTCTTCGACGACCACGAGCAATTGCTATTATGGGATAGAAGAAAACTACCA
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT4G39 TCACGTGAGCGATTCGGGGTCGGGATCGGGTTGTACAGGTAGTATATCCGAGTATTTGATGGAGACATTACCGGGTTGGAGAGTGGAGGATTTGCTTGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_110 TCACGTGAGCGATTCGGGGTCGGGATCGGGTTGTACAGGTAGTATATCCGAGTATTTGATGGAGACATTACCGGGTTGGAGAGTGGAGGATTTGCTTGAA
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT4G39 CACCCTTCTTGTGTCTCCTATGAGGATAACATTATTACTAATAACAATAACAGTGAGTCTTATAGGGTTTATGATGGTTCTTCACAATTCCATCATCAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
RE_110 CACCCTTCTTGTGTCTCCTATGAGGATAACATTATTACTAATAACAATAACAGTGAGTCCTATAGGGTTTATGATGGTTCTTCACAATTCCATCATCAAG
610 620 630 640 650 660 670 680 690 700
710 720
AT4G39 GGTTTTGGGATCACAAACCCTTCTCT
::::::::::::::::::::::::::
RE_110 GGTTTTGGGATCACAAACCCTTCTCT
710 720
10 20 30 40 50 60 70 80 90 100
AT4G39 MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDICGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_110 MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDICGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLL
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT4G39 TGVKISASPSAYPRASNSNSAAAFGRAKTRPKSVSSEVPSSASNEVFTSSSSTTTSNCYYGIEENYHHVSDSGSGSGCTGSISEYLMETLPGWRVEDLLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_110 TGVKISASPSAYPRASNSNSAAAFGRAKTRPKSVSSEVPSSASNEVFTSSSSTTTSNCYYGIEENYHHVSDSGSGSGCTGSISEYLMETLPGWRVEDLLE
110 120 130 140 150 160 170 180 190 200
210 220 230 240
AT4G39 HPSCVSYEDNIITNNNNSESYRVYDGSSQFHHQGFWDHKPFS
::::::::::::::::::::::::::::::::::::::::::
RE_110 HPSCVSYEDNIITNNNNSESYRVYDGSSQFHHQGFWDHKPFS
210 220 230 240
|
|||