◆◆◆RE_1102 detail◆◆◆

Code name	RE_1102
Locus	AT5G15840
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.50%一致
comment	0520_20080115_1102_FRW1_525
sequence	>RE_1102_1119bp ATGTTGAAACAAGAGAGTAACGACATAGGTAGTGGAGAGAACAACAGGGCACGACCCTGTGACACATGCCGGTCAAACGCCTGCACCGTGTATTGCCATG CAGATTCTGCCTACTTGTGCATGAGCTGTGATGCTCAAGTTCACTCTGCCAATCGCGTTGCTTCCCGCCATAAACGTGTCCGGGTCTGCGAGTCATGTGA GCGTGCTCCGGCTGCTTTTTTGTGTGAGGCAGATGATGCCTCTCTATGCACAGCCTGTGATTCAGAGGTTCATTCTGCAAACCCACTTGCTAGACGCCAT CAGCGAGTTCCAATTCTACCAATTTCTGGAAACTCATTCAGCTCCATGACCACTACTCACCACCAAAGCGAGAAAACAATGACCGATCCAGAGAAGAGAC TGGTGGTGGATCAAGAGGAAGGTGAAGAAGGTGATAAGGATGCCAAGGAGGTTGCTTCGTGGCTGTTCCCTAATTCAGACAAAAATAACAATAACCAAAA CAATGGGTTATTGTTTAGTGATGAGTATCTAAACCTTGTGGATTACAACTCGAGTATGGACTACAAATTCACAGGTGAATACAGTCAACACCAACAAAAC TGCAGCGTACCACAGACGAGCTACGGGGGAGATAGAGTTGTTCCGCTTAAACTTGAAGAATCAAGGGGCCACCAGTGCCATAACCAACAGAATTTTCAGT TCAATATCAAATATGGCTCCTCAGGGACTCACTACAACGACAATGGTTCCATTAACCATAACGCATACATTTCATCCATGGAAACTGGTGTTGTGCCGGA GTCAACAGCATGTGTCACAACAGCTTCACACCCAAGAACGCCCAAAGGGACAGTAGAGCAACAACCTGACCCTGCAAGCCAGATGATAACAGTAACACAA CTCAGTCCAATGGACAGAGAAGCCAGGGTCCTGAGATACAGAGAGAAGAGGAAGACAAGGAAATTTGAGATGACAATAAGGTATGCTTCGAGGAAGGCAT ATGCAGAGATAAGACCGCGGGTCAATGGCCGGTTCGCAAAGAGAGAAATCGAAGCCGAGGAGCAAGGGTTCGACACGATGCTAATGTACAACACAGGATA TGGGATTGTTCCTTCATTC >RE_1102_translated MLKQESNDIGSGENNRARPCDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRH QRVPILPISGNSFSSMTTTHHQSEKTMTDPEKRLVVDQEEGEEGDKDAKEVASWLFPNSDKNNNNQNNGLLFSDEYLNLVDYNSSMDYKFTGEYSQHQQN CSVPQTSYGGDRVVPLKLEESRGHQCHNQQNFQFNIKYGSSGTHYNDNGSINHNAYISSMETGVVPESTACVTTASHPRTPKGTVEQQPDPASQMITVTQ LSPMDREARVLRYREKRKTRKFEMTIRYASRKAYAEIRPRVNGRFAKREIEAEEQGFDTMLMYNTGYGIVPSF
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1116/1119 (99.7%)（アミノ酸配列で371/373 (99.5%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G15 ATGTTGAAACAAGAGAGTAACGACATAGGTAGTGGAGAGAACAACAGGGCACGACCCTGTGACACATGCCGGTCAAACGCCTGCACCGTGTATTGCCATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 ATGTTGAAACAAGAGAGTAACGACATAGGTAGTGGAGAGAACAACAGGGCACGACCCTGTGACACATGCCGGTCAAACGCCTGCACCGTGTATTGCCATG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G15 CAGATTCTGCCTACTTGTGCATGAGCTGTGATGCTCAAGTTCACTCTGCCAATCGCGTTGCTTCCCGCCATAAACGTGTCCGGGTCTGCGAGTCATGTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 CAGATTCTGCCTACTTGTGCATGAGCTGTGATGCTCAAGTTCACTCTGCCAATCGCGTTGCTTCCCGCCATAAACGTGTCCGGGTCTGCGAGTCATGTGA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G15 GCGTGCTCCGGCTGCTTTTTTGTGTGAGGCAGATGATGCCTCTCTATGCACAGCCTGTGATTCAGAGGTTCATTCTGCAAACCCACTTGCTAGACGCCAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 GCGTGCTCCGGCTGCTTTTTTGTGTGAGGCAGATGATGCCTCTCTATGCACAGCCTGTGATTCAGAGGTTCATTCTGCAAACCCACTTGCTAGACGCCAT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G15 CAGCGAGTTCCAATTCTACCAATTTCTGGAAACTCTTTCAGCTCCATGACCACTACTCACCACCAAAGCGAGAAAACAATGACCGATCCAGAGAAGAGAC ::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 CAGCGAGTTCCAATTCTACCAATTTCTGGAAACTCATTCAGCTCCATGACCACTACTCACCACCAAAGCGAGAAAACAATGACCGATCCAGAGAAGAGAC 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G15 TGGTGGTGGATCAAGAGGAAGGTGAAGAAGGTGATAAGGATGCCAAGGAGGTTGCTTCGTGGCTGTTCCCTAATTCAGACAAAAATAACAATAACCAAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 TGGTGGTGGATCAAGAGGAAGGTGAAGAAGGTGATAAGGATGCCAAGGAGGTTGCTTCGTGGCTGTTCCCTAATTCAGACAAAAATAACAATAACCAAAA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G15 CAATGGGTTATTGTTTAGTGATGAGTATCTAAACCTTGTGGATTACAACTCGAGTATGGACTACAAATTCACAGGTGAATACAGTCAACACCAACAAAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 CAATGGGTTATTGTTTAGTGATGAGTATCTAAACCTTGTGGATTACAACTCGAGTATGGACTACAAATTCACAGGTGAATACAGTCAACACCAACAAAAC 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G15 TGCAGCGTACCACAGACGAGCTACGGGGGAGATAGAGTTGTTCCGCTTAAACTTGAAGAATCAAGGGGCCACCAGTGCCATAACCAACAGAATTTTCAGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 TGCAGCGTACCACAGACGAGCTACGGGGGAGATAGAGTTGTTCCGCTTAAACTTGAAGAATCAAGGGGCCACCAGTGCCATAACCAACAGAATTTTCAGT 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT5G15 TCAATATCAAATATGGCTCCTCAGGGACTCACTACAACGACAATGGTTCCATTAACCATAACGCATACATTTCATCCATGGAAACTGGTGTTGTGCCGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 TCAATATCAAATATGGCTCCTCAGGGACTCACTACAACGACAATGGTTCCATTAACCATAACGCATACATTTCATCCATGGAAACTGGTGTTGTGCCGGA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT5G15 GTCAACAGCATGTGTCACAACAGCTTCACACCCAAGAACGCCCAAAGGGACAGTAGAGCAACAACCTGACCCTGCAAGCCAGATGATAACAGTAACACAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 GTCAACAGCATGTGTCACAACAGCTTCACACCCAAGAACGCCCAAAGGGACAGTAGAGCAACAACCTGACCCTGCAAGCCAGATGATAACAGTAACACAA 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT5G15 CTCAGTCCAATGGACAGAGAAGCCAGGGTCCTGAGATACAGAGAGAAGAGGAAGACAAGGAAATTTGAGAAGACAATAAGGTATGCTTCGAGGAAGGCAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::: RE_110 CTCAGTCCAATGGACAGAGAAGCCAGGGTCCTGAGATACAGAGAGAAGAGGAAGACAAGGAAATTTGAGATGACAATAAGGTATGCTTCGAGGAAGGCAT 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT5G15 ATGCAGAGATAAGACCGCGGGTCAATGGCCGGTTCGCAAAGAGAGAAATCGAAGCCGAGGAGCAAGGGTTCAACACGATGCTAATGTACAACACAGGATA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::: RE_110 ATGCAGAGATAAGACCGCGGGTCAATGGCCGGTTCGCAAAGAGAGAAATCGAAGCCGAGGAGCAAGGGTTCGACACGATGCTAATGTACAACACAGGATA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 AT5G15 TGGGATTGTTCCTTCATTC ::::::::::::::::::: RE_110 TGGGATTGTTCCTTCATTC 1110 10 20 30 40 50 60 70 80 90 100 AT5G15 MLKQESNDIGSGENNRARPCDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 MLKQESNDIGSGENNRARPCDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRH 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G15 QRVPILPISGNSFSSMTTTHHQSEKTMTDPEKRLVVDQEEGEEGDKDAKEVASWLFPNSDKNNNNQNNGLLFSDEYLNLVDYNSSMDYKFTGEYSQHQQN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 QRVPILPISGNSFSSMTTTHHQSEKTMTDPEKRLVVDQEEGEEGDKDAKEVASWLFPNSDKNNNNQNNGLLFSDEYLNLVDYNSSMDYKFTGEYSQHQQN 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G15 CSVPQTSYGGDRVVPLKLEESRGHQCHNQQNFQFNIKYGSSGTHYNDNGSINHNAYISSMETGVVPESTACVTTASHPRTPKGTVEQQPDPASQMITVTQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 CSVPQTSYGGDRVVPLKLEESRGHQCHNQQNFQFNIKYGSSGTHYNDNGSINHNAYISSMETGVVPESTACVTTASHPRTPKGTVEQQPDPASQMITVTQ 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 AT5G15 LSPMDREARVLRYREKRKTRKFEKTIRYASRKAYAEIRPRVNGRFAKREIEAEEQGFNTMLMYNTGYGIVPSF ::::::::::::::::::::::: :::::::::::::::::::::::::::::::::.::::::::::::::: RE_110 LSPMDREARVLRYREKRKTRKFEMTIRYASRKAYAEIRPRVNGRFAKREIEAEEQGFDTMLMYNTGYGIVPSF 310 320 330 340 350 360 370

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