◆◆◆RE_1104 detail◆◆◆

Code name	RE_1104
Locus	AT5G48250
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.50%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_1104_1119bp ATGGGTTATATGTGTGATTTCTGTGGTGAACAAAGATCAATGGTGTATTGTCGATCTGATGCAGCGTGTTTGTGTCTTTCGTGTGACCGTAATGTTCATT CTGCTAATGCTCTATCGAAACGTCATTTGCGGACTTTGGTATGTGAGAGGTGTAATGCACAGCCAGCTTCTGTCCGGTGTAGTGATGAGAGGGTTTCTCT ATGTCAAAACTGTGATTGGTCAGGCCATGACGGCAAGAATTCTACTACTACTTCACATCATAAAAGGCAAACCATCAATTGTTATTCTGGTTGTCCCTCG AGTGCCGAATTATCCTCGATATGGTCTTTCTGTATGGATTTGAATATCTCTTCTGCTGAAGAATCCGCTTGTGAGCAAGGAATGGGTTTGATGACTATAG ATGAAGATGGCACAGGAGAAAAATCTGGTGTCCAAAAAATTAATGTAGAACAGCCTGAAACCAGTTCGGCTGCACAAGGTATGGATCACTCTAGTGTTCC AGAAAATTCATCAATGGCTAAGGAGCTTGGAGTATGTGAGGATGACTTCAATGGAAATCTCATTTCAGATGAAGTAGACTTGGCTCTTGAGAACTATGAA GAACTCTTTGGTTCAGCCCTCAACTCATCAAGATATCTCTTCGAGCACGGTGGAATTGGAAGTCTTTTCGAGAAAGATGAAGCTCATGAGGGCTCAATGC AGCAGCCAGCATTAAGCAATAATGCATCTGCAGATTCGTTCATGACTTGTAGAACCGAGCCAATAATTTGCTATTCATCAAAGCCAGCACATTCGAATAT CTCCTTCTCTGGCATCACTGGAGAAAGTAATGCTGGAGATTTCCAAGATTGTGGGGCGTCATCGATGAAGCAGCTTTCAAGGGAGCCACAACCATGGTGC CATCCAACAGCACAGGACATTATTGCTTCCTCACATGCAACAACACGTAATAACGCTGTTATGCGTTACAAGGAAAAGAAGAAGGCTCGCAAGTTTGACA AGCGAGTAAGGTATGTCTCTAGGAAAGAAAGGGCTGATGTGAGACGGCGTGTGAAAGGACGGTTTGTCAAGTCCGGTGAAGCTTATGATTACGACCCGAT GAGCCCAACAAGAAGCTAC >RE_1104_translated MGYMCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHLRTLVCERCNAQPASVRCSDERVSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPS SAELSSIWSFCMDLNISSAEESACEQGMGLMTIDEDGTGEKSGVQKINVEQPETSSAAQGMDHSSVPENSSMAKELGVCEDDFNGNLISDEVDLALENYE ELFGSALNSSRYLFEHGGIGSLFEKDEAHEGSMQQPALSNNASADSFMTCRTEPIICYSSKPAHSNISFSGITGESNAGDFQDCGASSMKQLSREPQPWC HPTAQDIIASSHATTRNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSGEAYDYDPMSPTRSY
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1117/1119 (99.8%)（アミノ酸配列で371/373 (99.5%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G48 ATGGGTTATATGTGTGATTTCTGTGGTGAACAAAGATCAATGGTGTATTGTCGATCTGATGCAGCGTGTTTGTGTCTTTCGTGTGACCGTAATGTTCATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 ATGGGTTATATGTGTGATTTCTGTGGTGAACAAAGATCAATGGTGTATTGTCGATCTGATGCAGCGTGTTTGTGTCTTTCGTGTGACCGTAATGTTCATT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G48 CTGCTAATGCTCTATCGAAACGTCATTCGCGGACTTTGGTATGTGAGAGGTGTAATGCACAGCCAGCTTCTGTCCGGTGTAGTGATGAGAGGGTTTCTCT ::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 CTGCTAATGCTCTATCGAAACGTCATTTGCGGACTTTGGTATGTGAGAGGTGTAATGCACAGCCAGCTTCTGTCCGGTGTAGTGATGAGAGGGTTTCTCT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G48 ATGTCAAAACTGTGATTGGTCAGGCCATGACGGCAAGAATTCTACTACTACTTCACATCATAAAAGGCAAACCATCAATTGTTATTCTGGTTGTCCCTCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 ATGTCAAAACTGTGATTGGTCAGGCCATGACGGCAAGAATTCTACTACTACTTCACATCATAAAAGGCAAACCATCAATTGTTATTCTGGTTGTCCCTCG 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G48 AGTGCCGAATTATCCTCGATATGGTCTTTCTGTATGGATTTGAATATCTCTTCTGCTGAAGAATCCGCTTGTGAGCAAGGAATGGGTTTGATGACTATAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 AGTGCCGAATTATCCTCGATATGGTCTTTCTGTATGGATTTGAATATCTCTTCTGCTGAAGAATCCGCTTGTGAGCAAGGAATGGGTTTGATGACTATAG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G48 ATGAAGATGGCACAGGAGAAAAATCTGGTGTCCAAAAAATTAATGTAGAACAGCCTGAAACCAGTTCGGCTGCACAAGGTATGGATCACTCTAGTGTTCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 ATGAAGATGGCACAGGAGAAAAATCTGGTGTCCAAAAAATTAATGTAGAACAGCCTGAAACCAGTTCGGCTGCACAAGGTATGGATCACTCTAGTGTTCC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G48 AGAAAATTCATCAATGGCTAAGGAGCTTGGAGTATGTGAGGATGACTTCAATGGAAATCTCATTTCAGATGAAGTAGACTTGGCTCTTGAGAACTATGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 AGAAAATTCATCAATGGCTAAGGAGCTTGGAGTATGTGAGGATGACTTCAATGGAAATCTCATTTCAGATGAAGTAGACTTGGCTCTTGAGAACTATGAA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G48 GAACTCTTTGGTTCAGCCTTCAACTCATCAAGATATCTCTTCGAGCACGGTGGAATTGGAAGTCTTTTCGAGAAAGATGAAGCTCATGAGGGCTCAATGC :::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 GAACTCTTTGGTTCAGCCCTCAACTCATCAAGATATCTCTTCGAGCACGGTGGAATTGGAAGTCTTTTCGAGAAAGATGAAGCTCATGAGGGCTCAATGC 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT5G48 AGCAGCCAGCATTAAGCAATAATGCATCTGCAGATTCGTTCATGACTTGTAGAACCGAGCCAATAATTTGCTATTCATCAAAGCCAGCACATTCGAATAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 AGCAGCCAGCATTAAGCAATAATGCATCTGCAGATTCGTTCATGACTTGTAGAACCGAGCCAATAATTTGCTATTCATCAAAGCCAGCACATTCGAATAT 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT5G48 CTCCTTCTCTGGCATCACTGGAGAAAGTAATGCTGGAGATTTCCAAGATTGTGGGGCGTCATCGATGAAGCAGCTTTCAAGGGAGCCACAACCATGGTGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 CTCCTTCTCTGGCATCACTGGAGAAAGTAATGCTGGAGATTTCCAAGATTGTGGGGCGTCATCGATGAAGCAGCTTTCAAGGGAGCCACAACCATGGTGC 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT5G48 CATCCAACAGCACAGGACATTATTGCTTCCTCACATGCAACAACACGTAATAACGCTGTTATGCGTTACAAGGAAAAGAAGAAGGCTCGCAAGTTTGACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 CATCCAACAGCACAGGACATTATTGCTTCCTCACATGCAACAACACGTAATAACGCTGTTATGCGTTACAAGGAAAAGAAGAAGGCTCGCAAGTTTGACA 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT5G48 AGCGAGTAAGGTATGTCTCTAGGAAAGAAAGGGCTGATGTGAGACGGCGTGTGAAAGGACGGTTTGTCAAGTCCGGTGAAGCTTATGATTACGACCCGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 AGCGAGTAAGGTATGTCTCTAGGAAAGAAAGGGCTGATGTGAGACGGCGTGTGAAAGGACGGTTTGTCAAGTCCGGTGAAGCTTATGATTACGACCCGAT 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 AT5G48 GAGCCCAACAAGAAGCTAC ::::::::::::::::::: RE_110 GAGCCCAACAAGAAGCTAC 1110 10 20 30 40 50 60 70 80 90 100 AT5G48 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRCSDERVSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPS :::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 MGYMCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHLRTLVCERCNAQPASVRCSDERVSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPS 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G48 SAELSSIWSFCMDLNISSAEESACEQGMGLMTIDEDGTGEKSGVQKINVEQPETSSAAQGMDHSSVPENSSMAKELGVCEDDFNGNLISDEVDLALENYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 SAELSSIWSFCMDLNISSAEESACEQGMGLMTIDEDGTGEKSGVQKINVEQPETSSAAQGMDHSSVPENSSMAKELGVCEDDFNGNLISDEVDLALENYE 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G48 ELFGSAFNSSRYLFEHGGIGSLFEKDEAHEGSMQQPALSNNASADSFMTCRTEPIICYSSKPAHSNISFSGITGESNAGDFQDCGASSMKQLSREPQPWC :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 ELFGSALNSSRYLFEHGGIGSLFEKDEAHEGSMQQPALSNNASADSFMTCRTEPIICYSSKPAHSNISFSGITGESNAGDFQDCGASSMKQLSREPQPWC 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 AT5G48 HPTAQDIIASSHATTRNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSGEAYDYDPMSPTRSY ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_110 HPTAQDIIASSHATTRNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSGEAYDYDPMSPTRSY 310 320 330 340 350 360 370

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