◆◆◆RE_1110 detail◆◆◆

Code name	RE_1110
Locus	AT4G29000
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.20%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_1110_1809bp ATGGGTGAAGACGGCGGAGGAGGCGAATTCCCGCCAAAAAAGGACGGTGTTGAAGAGGGTTTTCCGACGAAGAAGCCAGCAAGGCAGCTCGACTTCACTG GTGGCTCCGATGAACATTCACTGTCTAAACCAGCGGCTCCTACCGTCGTAGCTACGTCGGTGAAACCCATCATTAGTAGCTCTGTCCCTTCGACGATACG GCCGGGTATGACCATAGCAATCGGTCAGGTTACTCAGGTACGACCGACGTTACCAATGGCGACGACGATGTCAAATCCGCCGTCACGGTCACAAATCGTT AACGCGCCAATTAGGCATCCGATACCGGAATCTCCAAAAGCTAGAGGTCCAAGGCCTAATGTGGAAGGTAGAGATGGAACCCCTCAAAAGAAGAAGCAGT GTAACTGTAAACACTCACGCTGCTTGAAATTGTACTGTGAATGCTTTGCATCCGGAACATATTGTGACGGTCGTAACTGTGTAAATTGTTTCAACAATGT TGATAATGAACCTGCTAGACGAGAAGCTGTGGAAGCAACTCTGGAGCGGAATCCATTTGCGTTCAGGCCTAAAATTGCTAGCAGTCCACATGGTGGGCGG GATAAAAGGGAGGATATCGGTGAAGTTGTGTTGTTAGGGAAACATAACAAAGGATGCCACTGCAAAAAATCAGGATGCCTTAAGAAGTATTGCGAGTGCT TTCAAGCAAATATTCCTTGTTCCGAGAACTGCAAATGCTTGGATTGCAAGAACTTTGAAGGAAGTGAAGAGAGACAAGCTTTGTTTCACGGTGAACATTC CAACCACATGGCTTATCTTCAACAAGCAGCAAATGCAGCCATTACTGGAGCTGTTGGTTCCTCCGGCTTTGCTCCTTCTCCAGCACCTAAGAGAAGGAAA GGTCAAGAGATTTTGTTCAACCAAGCAATTAAAGATTCATCTAGGCTTAGCCACTTTCCACAGGTAAATAATGGAAGAACTGGTGGACCAACCTCAGGCA CATCTCCATCACCTGTTTCTCGTGCTGGTGGCAATGCATCGTCAGTTCCATCAAAGTTTGTATACAGGTCCCTTTTAGCAGATATAATCCAACCACATGA TGTGAGAGCACTTTGCTCTGTTTTAGTCACTGTAGCCGGAGAAGCAGCAAAGACATCAACAGATAAAAGAAATGAAATAGAAAATCGGGTGGACGATCAA ACAGAAACTTCTTTAGCTTCTTCTGCACAAGATCAGCCTCAAGGCAATAACAATGCAGCTGATGTGGAGATGGTTGCAACTGATCATAATCAAGCTGATA AGTCTGGACCAGAGGAATCCAATTCAGATGGTGTTGATGCCTCTAAAGTGACCCCGCTATCTCCAGCAACTTTGGCTTTGATGTGCGATGAACAAGACAC TATCTTCGGGGTGGCTGCACCTTCACCTAATGGCTCAGTCGATCCCAATGGCTGCAGACCAAACTCACAAGGCCAGTCAGAAATTTACGCAGAGCAGGAG AGACTGGTGTTAACCAAATTCAGAGACTGCCTTAATCGACTTATCTCTTACGCAGAAATAAAAGAATCAAAGTGTTTACCTTTAGCAAGAATGCACATAC AGCCACCTGCAATCGCGACTGTAAAAACCGAGAATGGGATTCAACAGCAAGTACCAATTGTGAATGGAGCTTCGCGAACCAATTGTCAACCTACACTCAA CAAACCGCAGCCTATGCAGCTGATGAACACAACATCAGCAGCACCAGCAACAGCAACAAACACTCAACATCTTCAAAAACCTCCAGCTTTATCAGAGAAG AAAGACCCC >RE_1110_translated MGEDGGGGEFPPKKDGVEEGFPTKKPARQLDFTGGSDEHSLSKPAAPTVVATSVKPIISSSVPSTIRPGMTIAIGQVTQVRPTLPMATTMSNPPSRSQIV NAPIRHPIPESPKARGPRPNVEGRDGTPQKKKQCNCKHSRCLKLYCECFASGTYCDGRNCVNCFNNVDNEPARREAVEATLERNPFAFRPKIASSPHGGR DKREDIGEVVLLGKHNKGCHCKKSGCLKKYCECFQANIPCSENCKCLDCKNFEGSEERQALFHGEHSNHMAYLQQAANAAITGAVGSSGFAPSPAPKRRK GQEILFNQAIKDSSRLSHFPQVNNGRTGGPTSGTSPSPVSRAGGNASSVPSKFVYRSLLADIIQPHDVRALCSVLVTVAGEAAKTSTDKRNEIENRVDDQ TETSLASSAQDQPQGNNNAADVEMVATDHNQADKSGPEESNSDGVDASKVTPLSPATLALMCDEQDTIFGVAAPSPNGSVDPNGCRPNSQGQSEIYAEQE RLVLTKFRDCLNRLISYAEIKESKCLPLARMHIQPPAIATVKTENGIQQQVPIVNGASRTNCQPTLNKPQPMQLMNTTSAAPATATNTQHLQKPPALSEK KDP
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1802/1809 (99.6%)（アミノ酸配列で598/603 (99.2%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT4G29 ATGGGTGAAGACGGCGGAGGAGGCGAATTCCCGCCAAAAAAGGACGGTGTTGAAGAGGGTTTTCCGACGAAGAAGCCAGCAAGGCAGCTCGACTTCACTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 ATGGGTGAAGACGGCGGAGGAGGCGAATTCCCGCCAAAAAAGGACGGTGTTGAAGAGGGTTTTCCGACGAAGAAGCCAGCAAGGCAGCTCGACTTCACTG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G29 GTGGCTCCGATGAACATTCACTGTCTAAACCAGCGGCTCCTACCGTCGTAGCTACGTCGGTGAAACCCATCATTAGTAGCTCTGTCCCTTCGACGATACG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 GTGGCTCCGATGAACATTCACTGTCTAAACCAGCGGCTCCTACCGTCGTAGCTACGTCGGTGAAACCCATCATTAGTAGCTCTGTCCCTTCGACGATACG 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G29 GCCGGGTATGACCATAGCAATCGGTCAGGTTACTCAGGTACGACCGACGTTACCAATGGCGACGACGATGTCAAATCCGCCGTCACAGTCACAAATCGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::: RE_111 GCCGGGTATGACCATAGCAATCGGTCAGGTTACTCAGGTACGACCGACGTTACCAATGGCGACGACGATGTCAAATCCGCCGTCACGGTCACAAATCGTT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G29 AACGCGCCAATTAGGCATCCGATACCGGAATCTCCAAAAGCTAGAGGTCCAAGGCCTAATGTGGAAGGTAGAGATGGAACCCCTCAAAAGAAGAAGCAGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 AACGCGCCAATTAGGCATCCGATACCGGAATCTCCAAAAGCTAGAGGTCCAAGGCCTAATGTGGAAGGTAGAGATGGAACCCCTCAAAAGAAGAAGCAGT 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT4G29 GTAACTGTAAACACTCACGCTGCTTGAAATTGTACTGTGAATGCTTTGCATCCGGAACATATTGTGACGGTTGTAACTGTGTAAATTGTTTCAACAATGT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::: RE_111 GTAACTGTAAACACTCACGCTGCTTGAAATTGTACTGTGAATGCTTTGCATCCGGAACATATTGTGACGGTCGTAACTGTGTAAATTGTTTCAACAATGT 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT4G29 TGATAATGAACCTGCTAGACGAGAAGCTGTGGAAGCAACTCTGGAGCGGAATCCATTTGCGTTCAGGCCTAAAATTGCTAGCAGTCCACATGGTGGGCGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 TGATAATGAACCTGCTAGACGAGAAGCTGTGGAAGCAACTCTGGAGCGGAATCCATTTGCGTTCAGGCCTAAAATTGCTAGCAGTCCACATGGTGGGCGG 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT4G29 GATAAAAGGGAGGATATCGGTGAAGTTGTGTTGTTAGGGAAACATAACAAAGGATGCCACTGCAAAAAATCAGGATGCCTTAAGAAGTATTGCGAGTGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 GATAAAAGGGAGGATATCGGTGAAGTTGTGTTGTTAGGGAAACATAACAAAGGATGCCACTGCAAAAAATCAGGATGCCTTAAGAAGTATTGCGAGTGCT 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT4G29 TTCAAGCAAATATTCTTTGTTCCGAGAACTGCAAATGCTTGGATTGCAAGAACTTTGAAGGAAGTGAAGAGAGACAAGCTTTGTTTCACGGTGAACATTC ::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 TTCAAGCAAATATTCCTTGTTCCGAGAACTGCAAATGCTTGGATTGCAAGAACTTTGAAGGAAGTGAAGAGAGACAAGCTTTGTTTCACGGTGAACATTC 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT4G29 CAACCACATGGCTTATCTTCAACAAGCAGCAAATGCAGCCATTACTGGAGCTGTTGGTTCCTCCGGCTTTGCTCCTTCTCCAGCACCTAAGAGAAGGAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 CAACCACATGGCTTATCTTCAACAAGCAGCAAATGCAGCCATTACTGGAGCTGTTGGTTCCTCCGGCTTTGCTCCTTCTCCAGCACCTAAGAGAAGGAAA 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT4G29 GGTCAAGAGATTTTGTTCAACCAAGCAATTAAAGATTCATCTAGGCTTAGCCACTTTCCACAGGTAAATAATGGAAGAACTGGTGGACCAACCTCAGGCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 GGTCAAGAGATTTTGTTCAACCAAGCAATTAAAGATTCATCTAGGCTTAGCCACTTTCCACAGGTAAATAATGGAAGAACTGGTGGACCAACCTCAGGCA 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT4G29 CATCTCCATCACCTGTTTCTCGTGCTGGTGGCAATGCATCGTCAGTTCCATCAAAGTTTGTATACAGGTCCCTTTTAGCAGATATAATCCAACCACATGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 CATCTCCATCACCTGTTTCTCGTGCTGGTGGCAATGCATCGTCAGTTCCATCAAAGTTTGTATACAGGTCCCTTTTAGCAGATATAATCCAACCACATGA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT4G29 TGTGAGAGCACTTTGCTCTGTTTTAGTCACTGTAGCCGGAGAAGCAGCAAAGACATCAACAGATAAAAGAAATGAAATAGAAAATCGGGTGGACGATCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 TGTGAGAGCACTTTGCTCTGTTTTAGTCACTGTAGCCGGAGAAGCAGCAAAGACATCAACAGATAAAAGAAATGAAATAGAAAATCGGGTGGACGATCAA 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT4G29 ACAGAAACTTCTTTAGCTTCTTCTGCACAAGATCAGCCTCAAGGCAATAACAATGCAGCTGATGTGGAGATGGTTGCAACTGATCATAATCAAGCTGATA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 ACAGAAACTTCTTTAGCTTCTTCTGCACAAGATCAGCCTCAAGGCAATAACAATGCAGCTGATGTGGAGATGGTTGCAACTGATCATAATCAAGCTGATA 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT4G29 AGTCTGGACCAGAGGAATCCAATTCAGATGGTGTTGATGCCTCTAAAGTGACCCCGCTATCTCCAGCAACTTTGGCTTTGATGTGCGATGAACAAGACAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 AGTCTGGACCAGAGGAATCCAATTCAGATGGTGTTGATGCCTCTAAAGTGACCCCGCTATCTCCAGCAACTTTGGCTTTGATGTGCGATGAACAAGACAC 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT4G29 TATCTTCATGGTGGCTGCACCTTCACCTAATGGCTCAGTCGATCCCAATGGCTGCAGACCAAACTCACAGGGCCAGTCAGAAATTTACGCAGAGCAGGAG ::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::: RE_111 TATCTTCGGGGTGGCTGCACCTTCACCTAATGGCTCAGTCGATCCCAATGGCTGCAGACCAAACTCACAAGGCCAGTCAGAAATTTACGCAGAGCAGGAG 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT4G29 AGACTGGTGTTAACCAAATTCAGAGACTGCCTTAATCGACTTATCTCTTACGCAGAAATAAAAGAATCAAAGTGTTTATCTTTAGCAAGAATGCACATAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::: RE_111 AGACTGGTGTTAACCAAATTCAGAGACTGCCTTAATCGACTTATCTCTTACGCAGAAATAAAAGAATCAAAGTGTTTACCTTTAGCAAGAATGCACATAC 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 AT4G29 AGCCACCTGCAATCGCGACTGTAAAAACCGAGAATGGGATTCAACAGCAAGTACCAATTGTGAATGGAGCTTCGCGAACCAATTGTCAACCTACACTCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 AGCCACCTGCAATCGCGACTGTAAAAACCGAGAATGGGATTCAACAGCAAGTACCAATTGTGAATGGAGCTTCGCGAACCAATTGTCAACCTACACTCAA 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 AT4G29 CAAACCGCAGCCTATGCAGCTGATGAACACAACATCAGCAGCACCAGCAACAGCAACAAACACTCAACATCTTCAAAAACCTCCAGCTTTATCAGAGAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 CAAACCGCAGCCTATGCAGCTGATGAACACAACATCAGCAGCACCAGCAACAGCAACAAACACTCAACATCTTCAAAAACCTCCAGCTTTATCAGAGAAG 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 AT4G29 AAAGACCCC ::::::::: RE_111 AAAGACCCC 10 20 30 40 50 60 70 80 90 100 AT4G29 MGEDGGGGEFPPKKDGVEEGFPTKKPARQLDFTGGSDEHSLSKPAAPTVVATSVKPIISSSVPSTIRPGMTIAIGQVTQVRPTLPMATTMSNPPSQSQIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::: RE_111 MGEDGGGGEFPPKKDGVEEGFPTKKPARQLDFTGGSDEHSLSKPAAPTVVATSVKPIISSSVPSTIRPGMTIAIGQVTQVRPTLPMATTMSNPPSRSQIV 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G29 NAPIRHPIPESPKARGPRPNVEGRDGTPQKKKQCNCKHSRCLKLYCECFASGTYCDGCNCVNCFNNVDNEPARREAVEATLERNPFAFRPKIASSPHGGR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::: RE_111 NAPIRHPIPESPKARGPRPNVEGRDGTPQKKKQCNCKHSRCLKLYCECFASGTYCDGRNCVNCFNNVDNEPARREAVEATLERNPFAFRPKIASSPHGGR 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G29 DKREDIGEVVLLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCLDCKNFEGSEERQALFHGEHSNHMAYLQQAANAAITGAVGSSGFAPSPAPKRRK :::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 DKREDIGEVVLLGKHNKGCHCKKSGCLKKYCECFQANIPCSENCKCLDCKNFEGSEERQALFHGEHSNHMAYLQQAANAAITGAVGSSGFAPSPAPKRRK 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G29 GQEILFNQAIKDSSRLSHFPQVNNGRTGGPTSGTSPSPVSRAGGNASSVPSKFVYRSLLADIIQPHDVRALCSVLVTVAGEAAKTSTDKRNEIENRVDDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 GQEILFNQAIKDSSRLSHFPQVNNGRTGGPTSGTSPSPVSRAGGNASSVPSKFVYRSLLADIIQPHDVRALCSVLVTVAGEAAKTSTDKRNEIENRVDDQ 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT4G29 TETSLASSAQDQPQGNNNAADVEMVATDHNQADKSGPEESNSDGVDASKVTPLSPATLALMCDEQDTIFMVAAPSPNGSVDPNGCRPNSQGQSEIYAEQE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::: RE_111 TETSLASSAQDQPQGNNNAADVEMVATDHNQADKSGPEESNSDGVDASKVTPLSPATLALMCDEQDTIFGVAAPSPNGSVDPNGCRPNSQGQSEIYAEQE 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT4G29 RLVLTKFRDCLNRLISYAEIKESKCLSLARMHIQPPAIATVKTENGIQQQVPIVNGASRTNCQPTLNKPQPMQLMNTTSAAPATATNTQHLQKPPALSEK :::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 RLVLTKFRDCLNRLISYAEIKESKCLPLARMHIQPPAIATVKTENGIQQQVPIVNGASRTNCQPTLNKPQPMQLMNTTSAAPATATNTQHLQKPPALSEK 510 520 530 540 550 560 570 580 590 600 AT4G29 KDP ::: RE_111 KDP

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