| Code name | RE_1111 | |||
|---|---|---|---|---|
| Locus | AT5G66940 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | 0528_third_1111_FR_55 | |||
| sequence |
>RE_1111_675bp ATGCCTTCTGAATTCAGTGAATCTCGTCGGGTTCCTAAGATTCCCCACGGCCAAGGAGGATCTGTTGCGATTCCGACGGATCAACAAGAGCAGCTTTCTT GTCCTCGCTGTGAATCAACCAACACCAAGTTCTGTTACTACAACAACTACAACTTCTCACAACCTCGTCATTTCTGCAAGTCTTGTCGCCGTTACTGGAC TCATGGAGGTACTCTCCGTGACATTCCCGTCGGTGGTGTTTCCCGTAAAAGCTCAAAACGTTCCCGGACTTATTCCTCTGCCGCTACCACCTCCGTTGTC GGAAGCCGGAACTTTCCCTTACAAGCTACGCCTGTTCTTTTCCCTCAGTCGTCTTCCAACGGCGGTATCACGACGGCGAAGGGAAGTGCTTCGTCGTTCT ATGGCGGTTTCAGCTCTTTGATCAACTACAACGCCGCCGTGAGCAGAAATGGGCCTGGTGGCGGGTTTAATGGGCCAGATGCTTTTGGTCTTGGGCTTGG TCACGGGTCGTATTATGAGGACGTCAGATATGGGCAAGGAATAACGGTCTGGCCGTTTTCAAGTGGCGCTACTGATGCTGCAACTACTACAAGCCACATT GCTCAAATACCCGCCACGTGGCAGTTTGAAGGTCAAGAGAGCAAAGTCAGGTTCGTGTCTGGAGACTACGTAGCG >RE_1111_translated MPSEFSESRRVPKIPHGQGGSVAIPTDQQEQLSCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGVSRKSSKRSRTYSSAATTSVV GSRNFPLQATPVLFPQSSSNGGITTAKGSASSFYGGFSSLINYNAAVSRNGPGGGFNGPDAFGLGLGHGSYYEDVRYGQGITVWPFSSGATDAATTTSHI AQIPATWQFEGQESKVRFVSGDYVA |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 674/675 (99.9%)（アミノ酸配列で224/225 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT5G66 ATGCCTTCTGAATTCAGTGAATCTCGTCGGGTTCCTAAGATTCCCCACGGCCAAGGAGGATCTGTTGCGATTCCGACGGATCAACAAGAGCAGCTTTCTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_111 ATGCCTTCTGAATTCAGTGAATCTCGTCGGGTTCCTAAGATTCCCCACGGCCAAGGAGGATCTGTTGCGATTCCGACGGATCAACAAGAGCAGCTTTCTT
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G66 GTCCTCGCTGTGAATCAACCAACACCAAGTTCTGTTACTACAACAACTACAACTTCTCACAACCTCGTCATTTCTGCAAGTCTTGTCGCCGTTACTGGAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_111 GTCCTCGCTGTGAATCAACCAACACCAAGTTCTGTTACTACAACAACTACAACTTCTCACAACCTCGTCATTTCTGCAAGTCTTGTCGCCGTTACTGGAC
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT5G66 TCATGGAGGTACTCTCCGTGACATTCCCGTCGGTGGTGTTTCCCGTAAAAGCTCAAAACGTTCCCGGACTTATTCCTCTGCCGCTACCACCTCCGTTGTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_111 TCATGGAGGTACTCTCCGTGACATTCCCGTCGGTGGTGTTTCCCGTAAAAGCTCAAAACGTTCCCGGACTTATTCCTCTGCCGCTACCACCTCCGTTGTC
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT5G66 GGAAGCCGGAACTTTCCCTTACAAGCTACGCCTGTTCTTTTCCCTCAGTCGTCTTCCAACGGCGGTATCACGACGGCGAAGGGAAGTGCTTCGTCGTTCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_111 GGAAGCCGGAACTTTCCCTTACAAGCTACGCCTGTTCTTTTCCCTCAGTCGTCTTCCAACGGCGGTATCACGACGGCGAAGGGAAGTGCTTCGTCGTTCT
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT5G66 ATGGCGGTTTCAGCTCTTTGATCAACTACAACGCCGCCGTGAGCAGAAATGGGCCTGGTGGCGGGTTTAATGGGCCAGATGCTTTTGGTCTTGGGCTTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_111 ATGGCGGTTTCAGCTCTTTGATCAACTACAACGCCGCCGTGAGCAGAAATGGGCCTGGTGGCGGGTTTAATGGGCCAGATGCTTTTGGTCTTGGGCTTGG
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT5G66 TCACGGGTCGTATTATGAGGACGTCAGATATGGGCAAGGAATAACGGTCTGGCCGTTTTCAAGTGGCGCTACTGATGCTGCAACTACTACAAGCCACATT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_111 TCACGGGTCGTATTATGAGGACGTCAGATATGGGCAAGGAATAACGGTCTGGCCGTTTTCAAGTGGCGCTACTGATGCTGCAACTACTACAAGCCACATT
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670
AT5G66 GCTCAAATACCCGCCACGTGGCAGTTTGAAGGTCAAGAGAGCAAAGTCGGGTTCGTGTCTGGAGACTACGTAGCG
:::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::
RE_111 GCTCAAATACCCGCCACGTGGCAGTTTGAAGGTCAAGAGAGCAAAGTCAGGTTCGTGTCTGGAGACTACGTAGCG
610 620 630 640 650 660 670
10 20 30 40 50 60 70 80 90 100
AT5G66 MPSEFSESRRVPKIPHGQGGSVAIPTDQQEQLSCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGVSRKSSKRSRTYSSAATTSVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_111 MPSEFSESRRVPKIPHGQGGSVAIPTDQQEQLSCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGVSRKSSKRSRTYSSAATTSVV
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G66 GSRNFPLQATPVLFPQSSSNGGITTAKGSASSFYGGFSSLINYNAAVSRNGPGGGFNGPDAFGLGLGHGSYYEDVRYGQGITVWPFSSGATDAATTTSHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_111 GSRNFPLQATPVLFPQSSSNGGITTAKGSASSFYGGFSSLINYNAAVSRNGPGGGFNGPDAFGLGLGHGSYYEDVRYGQGITVWPFSSGATDAATTTSHI
110 120 130 140 150 160 170 180 190 200
210 220
AT5G66 AQIPATWQFEGQESKVGFVSGDYVA
:::::::::::::::: ::::::::
RE_111 AQIPATWQFEGQESKVRFVSGDYVA
210 220
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