◆◆◆RE_1112 detail◆◆◆

Code name	RE_1112
Locus	AT1G47870
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.70%一致
comment	0115_アミノ酸配列70%以上一致/0311_アミノ酸配列70%以上一致
sequence	>RE_1112_1188bp ATGGCCGCGACATCAAACTCAGGCGAAGATCCGACTCTCTCTTACCATCACCGATCTCCTTTTCGCTTCGAATTACTTCAATCTATCTCTTCCTCTGATC CTCGTTACTCTTCTCTAACTCCTTCTTCAACGAATCGACCTTTCTCAGTCTCTCAATCGCTTCCGAATTCACAACTGTCTCCTCTAATTTCACCTCACTG GGACGATTCTTACTCTCAAATCACTCAGAAAGTTCAGAAGAGTAGAAAGAATCATCGAATTCAGCTTGGATCTATTGCCAACATGTCTGGAGGAGAAAGC ATAGATATAGCTAAAGTAATAGTGAAACAAGAGTCGTCTCCTCAAAATGTTAAACGTGTATACAACAAGTCAAAGGGTGGTACTAAACTGTTAAAGGCTG GGAAACGAATGGCGAATGGCGAAGTGCAAAATGGTGGCTTAAATGGAGCTAGTATTAACTGCCGTTATGACAGTTCTTTAGGGTTGTTGACAAAAAAATT CGTGAAGTTGATCCAGGAATCTGAGGATGGAACACTTGACCTTAACTATTGTGCAGTTGTTTTGGAGGTACAAAAAAGAAGGATATATGATATTACAAAT GTCCTTGAAGGAATTGGATTGATAGAGAAAACTACAAAGAATCATATCCGCTGGAAGGGTGCTGACAATCTTGGACAAAAGGACCTGGGAGATCAAATTT CTAGGCTTAAGTCAGAAGTAGAGAGTATGCAATCTGAGGAAAGCAGGTTGGATGATCTTATAAGGGAACGACAAGAAGCTCTCAGATCCTTGGAGGAAGA TGACTACTGTAGAAGGTACATGTTTATGACGGAGGAAGATATAACGAGTCTCCCACGGTTTCAGAACCAGACATTACTAGCAATTAAAGCTCCTACAGCT AGTTACATCGAAGTTCCAGATCCTGATGAGATGAGTTTTCCGCAACAGTACCGGATGGTGATTAGGAGTAGAATGGGGCCGATTGATGTCTATCTTTTAA GCAAATACAAAGGAGACAGTGCGGAAACAAGCGACAAGTTGGGTAATGAGTCTGATCAAAAAGCTCCAGTTGGAGTAGACACTCCTTCCTTGAAAATAGT AACTTCAGATACTGATTTAAAAGCAGATTACTGGTTCGAGTCAGATGCAGAGGTGAGCCTCACAGATTTATGGAGCAACTTCAACAGC >RE_1112_translated MAATSNSGEDPTLSYHHRSPFRFELLQSISSSDPRYSSLTPSSTNRPFSVSQSLPNSQLSPLISPHWDDSYSQITQKVQKSRKNHRIQLGSIANMSGGES IDIAKVIVKQESSPQNVKRVYNKSKGGTKLLKAGKRMANGEVQNGGLNGASINCRYDSSLGLLTKKFVKLIQESEDGTLDLNYCAVVLEVQKRRIYDITN VLEGIGLIEKTTKNHIRWKGADNLGQKDLGDQISRLKSEVESMQSEESRLDDLIRERQEALRSLEEDDYCRRYMFMTEEDITSLPRFQNQTLLAIKAPTA SYIEVPDPDEMSFPQQYRMVIRSRMGPIDVYLLSKYKGDSAETSDKLGNESDQKAPVGVDTPSLKIVTSDTDLKADYWFESDAEVSLTDLWSNFNS
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1187/1188 (99.9%)（アミノ酸配列で395/396 (99.7%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT1G47 ATGGCCGCGACATCAAACTCAGGCGAAGATCCGACTCTCTCTTACCATCACCGATCTCCTTTTCGCTTCGAATTACTTCAATCTATCTCTTCCTCTGATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 ATGGCCGCGACATCAAACTCAGGCGAAGATCCGACTCTCTCTTACCATCACCGATCTCCTTTTCGCTTCGAATTACTTCAATCTATCTCTTCCTCTGATC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G47 CTCGTTACTCTTCTCTAACTCCTTCTTCAACGAATCGACCTTTCTCAGTCTCTCAATCGCTTCCGAATTCACAACTGTCTCCTCTAATTTCACCTCACTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 CTCGTTACTCTTCTCTAACTCCTTCTTCAACGAATCGACCTTTCTCAGTCTCTCAATCGCTTCCGAATTCACAACTGTCTCCTCTAATTTCACCTCACTG 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G47 GGACGATTCTTACTCTCAAATCACTCAGAAAGTTCAGAAGAGTAGAAAGAATCATCGAATTCAGCTTGGATCTATTGCCAACATGTCTGGAGGAGAAAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 GGACGATTCTTACTCTCAAATCACTCAGAAAGTTCAGAAGAGTAGAAAGAATCATCGAATTCAGCTTGGATCTATTGCCAACATGTCTGGAGGAGAAAGC 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT1G47 ATAGATATAGCTAAAGTAATAGTGAAACAAGAGTCGTCTCCTCAAAATGTTAAACGTGTATACAACAAGTCAAAGGGTGGTACTAAACTGTTAAAGGCTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 ATAGATATAGCTAAAGTAATAGTGAAACAAGAGTCGTCTCCTCAAAATGTTAAACGTGTATACAACAAGTCAAAGGGTGGTACTAAACTGTTAAAGGCTG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT1G47 GGAAACGAATGGCGAATGGCGAAGTGCAAAATGGTGGCTTAAATGGAGCTAGTATTAACTGCCGTTATGACAGTTCTTTAGGGTTGTTGACAAAAAAATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 GGAAACGAATGGCGAATGGCGAAGTGCAAAATGGTGGCTTAAATGGAGCTAGTATTAACTGCCGTTATGACAGTTCTTTAGGGTTGTTGACAAAAAAATT 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT1G47 CGTGAAGTTGATCCAGGAAGCTGAGGATGGAACACTTGACCTTAACTATTGTGCAGTTGTTTTGGAGGTACAAAAAAGAAGGATATATGATATTACAAAT ::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 CGTGAAGTTGATCCAGGAATCTGAGGATGGAACACTTGACCTTAACTATTGTGCAGTTGTTTTGGAGGTACAAAAAAGAAGGATATATGATATTACAAAT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT1G47 GTCCTTGAAGGAATTGGATTGATAGAGAAAACTACAAAGAATCATATCCGCTGGAAGGGTGCTGACAATCTTGGACAAAAGGACCTGGGAGATCAAATTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 GTCCTTGAAGGAATTGGATTGATAGAGAAAACTACAAAGAATCATATCCGCTGGAAGGGTGCTGACAATCTTGGACAAAAGGACCTGGGAGATCAAATTT 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT1G47 CTAGGCTTAAGTCAGAAGTAGAGAGTATGCAATCTGAGGAAAGCAGGTTGGATGATCTTATAAGGGAACGACAAGAAGCTCTCAGATCCTTGGAGGAAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 CTAGGCTTAAGTCAGAAGTAGAGAGTATGCAATCTGAGGAAAGCAGGTTGGATGATCTTATAAGGGAACGACAAGAAGCTCTCAGATCCTTGGAGGAAGA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT1G47 TGACTACTGTAGAAGGTACATGTTTATGACGGAGGAAGATATAACGAGTCTCCCACGGTTTCAGAACCAGACATTACTAGCAATTAAAGCTCCTACAGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 TGACTACTGTAGAAGGTACATGTTTATGACGGAGGAAGATATAACGAGTCTCCCACGGTTTCAGAACCAGACATTACTAGCAATTAAAGCTCCTACAGCT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT1G47 AGTTACATCGAAGTTCCAGATCCTGATGAGATGAGTTTTCCGCAACAGTACCGGATGGTGATTAGGAGTAGAATGGGGCCGATTGATGTCTATCTTTTAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 AGTTACATCGAAGTTCCAGATCCTGATGAGATGAGTTTTCCGCAACAGTACCGGATGGTGATTAGGAGTAGAATGGGGCCGATTGATGTCTATCTTTTAA 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT1G47 GCAAATACAAAGGAGACAGTGCGGAAACAAGCGACAAGTTGGGTAATGAGTCTGATCAAAAAGCTCCAGTTGGAGTAGACACTCCTTCCTTGAAAATAGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 GCAAATACAAAGGAGACAGTGCGGAAACAAGCGACAAGTTGGGTAATGAGTCTGATCAAAAAGCTCCAGTTGGAGTAGACACTCCTTCCTTGAAAATAGT 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 AT1G47 AACTTCAGATACTGATTTAAAAGCAGATTACTGGTTCGAGTCAGATGCAGAGGTGAGCCTCACAGATTTATGGAGCAACTTCAACAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 AACTTCAGATACTGATTTAAAAGCAGATTACTGGTTCGAGTCAGATGCAGAGGTGAGCCTCACAGATTTATGGAGCAACTTCAACAGC 1110 1120 1130 1140 1150 1160 1170 1180 10 20 30 40 50 60 70 80 90 100 AT1G47 MAATSNSGEDPTLSYHHRSPFRFELLQSISSSDPRYSSLTPSSTNRPFSVSQSLPNSQLSPLISPHWDDSYSQITQKVQKSRKNHRIQLGSIANMSGGES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 MAATSNSGEDPTLSYHHRSPFRFELLQSISSSDPRYSSLTPSSTNRPFSVSQSLPNSQLSPLISPHWDDSYSQITQKVQKSRKNHRIQLGSIANMSGGES 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G47 IDIAKVIVKQESSPQNVKRVYNKSKGGTKLLKAGKRMANGEVQNGGLNGASINCRYDSSLGLLTKKFVKLIQEAEDGTLDLNYCAVVLEVQKRRIYDITN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: RE_111 IDIAKVIVKQESSPQNVKRVYNKSKGGTKLLKAGKRMANGEVQNGGLNGASINCRYDSSLGLLTKKFVKLIQESEDGTLDLNYCAVVLEVQKRRIYDITN 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G47 VLEGIGLIEKTTKNHIRWKGADNLGQKDLGDQISRLKSEVESMQSEESRLDDLIRERQEALRSLEEDDYCRRYMFMTEEDITSLPRFQNQTLLAIKAPTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 VLEGIGLIEKTTKNHIRWKGADNLGQKDLGDQISRLKSEVESMQSEESRLDDLIRERQEALRSLEEDDYCRRYMFMTEEDITSLPRFQNQTLLAIKAPTA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 AT1G47 SYIEVPDPDEMSFPQQYRMVIRSRMGPIDVYLLSKYKGDSAETSDKLGNESDQKAPVGVDTPSLKIVTSDTDLKADYWFESDAEVSLTDLWSNFNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 SYIEVPDPDEMSFPQQYRMVIRSRMGPIDVYLLSKYKGDSAETSDKLGNESDQKAPVGVDTPSLKIVTSDTDLKADYWFESDAEVSLTDLWSNFNS 310 320 330 340 350 360 370 380 390

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