◆◆◆RE_1114 detail◆◆◆

Code name	RE_1114
Locus	AT3G48160
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列92.30%一致
comment	0311_アミノ酸配列70%以上一致
sequence	>RE_1114_1209bp ATGTCAGATCTATCGCCAGAAAGATTCAAACTTGCCGTTACTTCTCCTTCTTCCATACCGGAATCTTCTTCGGCTTTACAATTACACCATTCCTATAGTC GCAAACAGAAATCTCTCGGACTTCTTTGTACCAATTTCTTAGCTTTGTATAATCGAGAAGGGATTGAAATGGTTGGGCTTGATGATGCTGCCTCGAAATT AGGAGTGGAGAGACGAAGAATCTATGATATTGTTAATGTTCTGGAGAGTGTTGGGGTTTTAACAAGAAGAGCAAAGAATCAGTATACGTGGAAAGGGTTT TCCGCAATTCCAGGAGCATTGAAGGAGCTACAAGAAGAGGGGGTTAAGGACACTTTTCATCGTTTCTATGTCAATGAGAATGTTAAAGGATCTGATGATG AGGATGATGATGAAGAGTCTTCTCAGCCTCACTCTAGTAGCCAGACTGATAGTTCAAAACCTGGTTCTCTTCCCCAATCTTCAGATCCCTCCAAAATAGA TAACCGACGAGAGAAATCTTTAGGATTGCTTACTCAGAACTTTATCAAACTCTTTATTTGCTCTGAAGCTATTAGGATCATCTCCCTTGATGACGCTGCA AAATTACTGCTTGGTGATGCCCACAATACATCAATAATGCGAACTAAAGTGAGGCGGCTTTATGATATAGCAAATGTCTTGTCGTCAATGAATCTCATAG AGAAGACTCACACCTTAGATTCTAGGAAACCAGCTTTCAAGTGGTTAGGGTACAATGGTGAGCCTACTTTCACACTGAGCAGCGATTTGTTGCAATTGGA GTCAAGAAAAAGAGCTTTCGGAACTGATATTACAAACGTCAATGTTAAGAGAAGCAAATCATCATCTTCGTCCCAAGAAAACGCTACAGAGAGAAGGCTA AAGATGAAAAAGCACTCAACACCAGAGAGTTCTTATAACAAAAGCTTTGATGTTCATGAATCAAGACATGGATCAAGAGGAGGTTACCATTTTGGACCTT TTGCACCAGGCACTGGTACATATCCAACTGCTGGTTTAGAGGATAACTCTAGGAGAGCTTTTGATGTTGAGAATCTGGATTCTGATTACCGTCCCTCTTA CCAAAACCAAGTTTTGAAAGACCTCTTTTCCCATTACATGGATGCTTGGAAGACATGGTTCAGCGAAGTCACCCAGGAGAATCCATTACCTAATACATCA CAACACCGT >RE_1114_translated MSDLSPERFKLAVTSPSSIPESSSALQLHHSYSRKQKSLGLLCTNFLALYNREGIEMVGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNQYTWKGF SAIPGALKELQEEGVKDTFHRFYVNENVKGSDDEDDDEESSQPHSSSQTDSSKPGSLPQSSDPSKIDNRREKSLGLLTQNFIKLFICSEAIRIISLDDAA KLLLGDAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTLDSRKPAFKWLGYNGEPTFTLSSDLLQLESRKRAFGTDITNVNVKRSKSSSSSQENATERRL KMKKHSTPESSYNKSFDVHESRHGSRGGYHFGPFAPGTGTYPTAGLEDNSRRAFDVENLDSDYRPSYQNQVLKDLFSHYMDAWKTWFSEVTQENPLPNTS QHR
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1131/1210 (93.5%)（アミノ酸配列で372/403 (92.3%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT3G48 ATGTCAGATCTATCGCCAGAAAGATTCAAACTTGCCGTTACTTCTCCTTCTTCCATACCGGAATCTTCTTCGGCTTTACAATTACACCATTCCTATAGTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 ATGTCAGATCTATCGCCAGAAAGATTCAAACTTGCCGTTACTTCTCCTTCTTCCATACCGGAATCTTCTTCGGCTTTACAATTACACCATTCCTATAGTC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G48 GCAAACAGAAATCTCTCGGACTTCTTTGTACCAATTTCTTAGCTTTGTATAATCGAGAAGGGATTGAAATGGTTGGGCTTGATGATGCTGCCTCGAAATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 GCAAACAGAAATCTCTCGGACTTCTTTGTACCAATTTCTTAGCTTTGTATAATCGAGAAGGGATTGAAATGGTTGGGCTTGATGATGCTGCCTCGAAATT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G48 AGGAGTGGAGAGACGAAGAATCTATGATATTGTTAATGTTCTGGAGAGTGTTGGGGTTTTAACAAGAAGAGCAAAGAATCAGTATACGTGGAAAGGGTTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 AGGAGTGGAGAGACGAAGAATCTATGATATTGTTAATGTTCTGGAGAGTGTTGGGGTTTTAACAAGAAGAGCAAAGAATCAGTATACGTGGAAAGGGTTT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G48 TCCGCAATTCCAGGAGCATTGAAGGAGCTACAAGAAGAGGGGGTTAAGGACACTTTTCATCGTTTCTATGTCAATGAGAATGTTAAAGGATCTGATGATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 TCCGCAATTCCAGGAGCATTGAAGGAGCTACAAGAAGAGGGGGTTAAGGACACTTTTCATCGTTTCTATGTCAATGAGAATGTTAAAGGATCTGATGATG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT3G48 AGGATGATGATGAAGAGTCTTCTCAGCCTCACTCTAGTAGCCAGACTGATAGTTCAAAACCTGGTTCTCTTCCCCAATCTTCAGATCCCTCCAAAATAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 AGGATGATGATGAAGAGTCTTCTCAGCCTCACTCTAGTAGCCAGACTGATAGTTCAAAACCTGGTTCTCTTCCCCAATCTTCAGATCCCTCCAAAATAGA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT3G48 TAACCGACGAGAGAAATCTTTAGGATTGCTTACTCAGAACTTTATCAAACTCTTTATTTGCTCTGAAGCTATTAGGATCATCTCCCTTGATGACGCTGCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 TAACCGACGAGAGAAATCTTTAGGATTGCTTACTCAGAACTTTATCAAACTCTTTATTTGCTCTGAAGCTATTAGGATCATCTCCCTTGATGACGCTGCA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT3G48 AAATTACTGCTTGGTGATGCCCACAATACATCAATAATGCGAACTAAAGTGAGGCGGCTTTATGATATAGCAAATGTCTTGTCGTCAATGAATCTCATAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 AAATTACTGCTTGGTGATGCCCACAATACATCAATAATGCGAACTAAAGTGAGGCGGCTTTATGATATAGCAAATGTCTTGTCGTCAATGAATCTCATAG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT3G48 AGAAGACTCACACCTTAGATTCTAGGAAACCAGCTTTCAAGTGGTTAGGGTACAATGGTGAGCCTACTTTCACACTGAGCAGCGATTTGTTGCAATTGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 AGAAGACTCACACCTTAGATTCTAGGAAACCAGCTTTCAAGTGGTTAGGGTACAATGGTGAGCCTACTTTCACACTGAGCAGCGATTTGTTGCAATTGGA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT3G48 GTCAAGAAAAAGAGCTTTCGGAACTGATATTACAAACGTCAATGTTAAGAGAAGCAAATCATCATCTTCGTCCCAAGAAAACGCTACAGAGAGAAGGCTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 GTCAAGAAAAAGAGCTTTCGGAACTGATATTACAAACGTCAATGTTAAGAGAAGCAAATCATCATCTTCGTCCCAAGAAAACGCTACAGAGAGAAGGCTA 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT3G48 AAGATGAAAAAGCACTCAACACCAGAGAGTTCTTATAACAAAAGCTTTGATGTTCATGAATCAAGACATGGATCAAGAGGAGGTTACCATTTTGGACCTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 AAGATGAAAAAGCACTCAACACCAGAGAGTTCTTATAACAAAAGCTTTGATGTTCATGAATCAAGACATGGATCAAGAGGAGGTTACCATTTTGGACCTT 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT3G48 TTGCACCAGGCACTGGTACATATCCAACTGCTGGTTTAGAGGATAACTCTAGGAGAGCTTTTGATGTTGAGAATCTGGATTCTGATTACCGTCCCTCTTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 TTGCACCAGGCACTGGTACATATCCAACTGCTGGTTTAGAGGATAACTCTAGGAGAGCTTTTGATGTTGAGAATCTGGATTCTGATTACCGTCCCTCTTA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 AT3G48 CCAAAACCAAGGT------GCATATATTTT-------------------------------------ATTCAC--------ATCCATT------------ ::::::::::: : : : : :::: : :::: ::::::: RE_111 CCAAAACCAAGTTTTGAAAG-ACCTCTTTTCCCATTACATGGATGCTTGGAAGACATGGTTCAGCGAAGTCACCCAGGAGAATCCATTACCTAATACATC 1110 1120 1130 1140 1150 1160 1170 1180 1190 AT3G48 ---------- RE_111 ACAACACCGT 1200 10 20 30 40 50 60 70 80 90 100 AT3G48 MSDLSPERFKLAVTSPSSIPESSSALQLHHSYSRKQKSLGLLCTNFLALYNREGIEMVGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNQYTWKGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 MSDLSPERFKLAVTSPSSIPESSSALQLHHSYSRKQKSLGLLCTNFLALYNREGIEMVGLDDAASKLGVERRRIYDIVNVLESVGVLTRRAKNQYTWKGF 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G48 SAIPGALKELQEEGVKDTFHRFYVNENVKGSDDEDDDEESSQPHSSSQTDSSKPGSLPQSSDPSKIDNRREKSLGLLTQNFIKLFICSEAIRIISLDDAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 SAIPGALKELQEEGVKDTFHRFYVNENVKGSDDEDDDEESSQPHSSSQTDSSKPGSLPQSSDPSKIDNRREKSLGLLTQNFIKLFICSEAIRIISLDDAA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G48 KLLLGDAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTLDSRKPAFKWLGYNGEPTFTLSSDLLQLESRKRAFGTDITNVNVKRSKSSSSSQENATERRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_111 KLLLGDAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTLDSRKPAFKWLGYNGEPTFTLSSDLLQLESRKRAFGTDITNVNVKRSKSSSSSQENATERRL 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 AT3G48 KMKKHSTPESSYNKSFDVHESRHGSRGGYHFGPFAPGTGTYPTAGLEDNSRRAFDVENLDSDYRPSYQNQGAYILFTSI--------------------- :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::. RE_111 KMKKHSTPESSYNKSFDVHESRHGSRGGYHFGPFAPGTGTYPTAGLEDNSRRAFDVENLDSDYRPSYQNQVLKDLFSHYMDAWKTWFSEVTQENPLPNTS 310 320 330 340 350 360 370 380 390 400 AT3G48 --- RE_111 QHR

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