| Code name | RE_1115 | |||
|---|---|---|---|---|
| Locus | AT5G02470 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.00%一致 | |||
| comment | 0115_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_1115_876bp ATGAGTATGGAGATGGAGTTGTTTGTCACTCCAGAGAAGCAGAGGCAACATCCTTCAGTGAGCGTTGAGAAAACTCCAGTGAGAAGGAAATTGATTGTTG ATGATGATTCTGAAATTGGATCAGAGAAGAAAGGGCAATCAACAACTTCTGGAGGCGGGCTTCGTCAATTCAGTGTTATGGTTTGTCAGAAGTTGGAAGC CAAGAAGATAACTACTTACAAGGAGGTTGCAGACGAAATTATTTCAGATTTTGCCACAATTAAGCAAAACGCAGAGAAGCCTTTGAATGAAAATGAGTAC AATGAGAAGAACATAAGGCGGAGAGTCTACGATGCGCTCAATGTGTTCATGGCGTTGGATATTATTGCAAGGGATAAAAAGGAAATCCGGTGGAAAGGAC TTCCTATTACCTGCAAAAAGGATGTGGAAGAAGTCAAGATGGATCATAATAAAGTTATGAGCAGTGTGCAAAAGAAGGCTGCTTTTCTTAAAGAGTTGAG AGAAAAGGTCTCAAGTCTTGAGAGTCTTATGTCGAGAAATCAAGAGATGGTTGTGAAGACTCAAGGCCCAGCAGAAGGATTTACCTTACCATTCATTCTA CTTGAGACAAACCCTCACGCAGTAGTCGAAATCGAGATTTCTGAAGATATGCAACTTGTACACCTCGACTTCAATAGCACACCTTTCTCGGTCCATGATG ATGCTTACATTTTGAAACTGGTGCAAGAACAGAAGCAAGAACAGAACAGAGTATCTTCTTCTTCATCTACACATCACCAATCTCAACATAGCTCCGCTCA TTCTTCATCCAGTTCTTGCATTGCTTCTGGAACCTCAGGCCCGGTTTGCTGGAACTCGGGATCCATTGATACTCGC >RE_1115_translated MSMEMELFVTPEKQRQHPSVSVEKTPVRRKLIVDDDSEIGSEKKGQSTTSGGGLRQFSVMVCQKLEAKKITTYKEVADEIISDFATIKQNAEKPLNENEY NEKNIRRRVYDALNVFMALDIIARDKKEIRWKGLPITCKKDVEEVKMDHNKVMSSVQKKAAFLKELREKVSSLESLMSRNQEMVVKTQGPAEGFTLPFIL LETNPHAVVEIEISEDMQLVHLDFNSTPFSVHDDAYILKLVQEQKQEQNRVSSSSSTHHQSQHSSAHSSSSSCIASGTSGPVCWNSGSIDTR |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 873/876 (99.7%)（アミノ酸配列で289/292 (99.0%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT5G02 ATGAGTATGGAGATGGAGTTGTTTGTCACTCCAGAGAAGCAGAGGCAACATCCTTCAGTGAGCGTTGAGAAAACTCCAGTGAGAAGGAAATTGATTGTTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_111 ATGAGTATGGAGATGGAGTTGTTTGTCACTCCAGAGAAGCAGAGGCAACATCCTTCAGTGAGCGTTGAGAAAACTCCAGTGAGAAGGAAATTGATTGTTG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G02 ATGATGATTCTGAAATTGGATCAGAGAAGAAAGGGCAATCAAGAACTTCTGGAGGCGGGCTTCGTCAATTCAGTGTTATGGTTTGTCAGAAGTTGGAAGC
:::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_111 ATGATGATTCTGAAATTGGATCAGAGAAGAAAGGGCAATCAACAACTTCTGGAGGCGGGCTTCGTCAATTCAGTGTTATGGTTTGTCAGAAGTTGGAAGC
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT5G02 CAAGAAGATAACTACTTACAAGGAGGTTGCAGACGAAATTATTTCAGATTTTGCCACAATTAAGCAAAACGCAGAGAAGCCTTTGAATGAAAATGAGTAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_111 CAAGAAGATAACTACTTACAAGGAGGTTGCAGACGAAATTATTTCAGATTTTGCCACAATTAAGCAAAACGCAGAGAAGCCTTTGAATGAAAATGAGTAC
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT5G02 AATGAGAAGAACATAAGGCGGAGAGTCTACGATGCGCTCAATGTGTTCATGGCGTTGGATATTATTGCAAGGGATAAAAAGGAAATCCGGTGGAAAGGAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_111 AATGAGAAGAACATAAGGCGGAGAGTCTACGATGCGCTCAATGTGTTCATGGCGTTGGATATTATTGCAAGGGATAAAAAGGAAATCCGGTGGAAAGGAC
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT5G02 TTCCTATTACCTGCAAAAAGGATGTGGAAGAAGTCAAGATGGATCGTAATAAAGTTATGAGCAGTGTGCAAAAGAAGGCTGCTTTTCTTAAAGAGTTGAG
::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_111 TTCCTATTACCTGCAAAAAGGATGTGGAAGAAGTCAAGATGGATCATAATAAAGTTATGAGCAGTGTGCAAAAGAAGGCTGCTTTTCTTAAAGAGTTGAG
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT5G02 AGAAAAGGTCTCAAGTCTTGAGAGTCTTATGTCGAGAAATCAAGAGATGGTTGTGAAGACTCAAGGCCCAGCAGAAGGATTTACCTTACCATTCATTCTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_111 AGAAAAGGTCTCAAGTCTTGAGAGTCTTATGTCGAGAAATCAAGAGATGGTTGTGAAGACTCAAGGCCCAGCAGAAGGATTTACCTTACCATTCATTCTA
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT5G02 CTTGAGACAAACCCTCACGCAGTAGTCGAAATCGAGATTTCTGAAGATATGCAACTTGTACACCTCGACTTCAATAGCACACCTTTCTCGGTCCATGATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_111 CTTGAGACAAACCCTCACGCAGTAGTCGAAATCGAGATTTCTGAAGATATGCAACTTGTACACCTCGACTTCAATAGCACACCTTTCTCGGTCCATGATG
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780 790 800
AT5G02 ATGCTTACATTTTGAAACTGATGCAAGAACAGAAGCAAGAACAGAACAGAGTATCTTCTTCTTCATCTACACATCACCAATCTCAACATAGCTCCGCTCA
:::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_111 ATGCTTACATTTTGAAACTGGTGCAAGAACAGAAGCAAGAACAGAACAGAGTATCTTCTTCTTCATCTACACATCACCAATCTCAACATAGCTCCGCTCA
710 720 730 740 750 760 770 780 790 800
810 820 830 840 850 860 870
AT5G02 TTCTTCATCCAGTTCTTGCATTGCTTCTGGAACCTCAGGCCCGGTTTGCTGGAACTCGGGATCCATTGATACTCGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_111 TTCTTCATCCAGTTCTTGCATTGCTTCTGGAACCTCAGGCCCGGTTTGCTGGAACTCGGGATCCATTGATACTCGC
810 820 830 840 850 860 870
10 20 30 40 50 60 70 80 90 100
AT5G02 MSMEMELFVTPEKQRQHPSVSVEKTPVRRKLIVDDDSEIGSEKKGQSRTSGGGLRQFSVMVCQKLEAKKITTYKEVADEIISDFATIKQNAEKPLNENEY
::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_111 MSMEMELFVTPEKQRQHPSVSVEKTPVRRKLIVDDDSEIGSEKKGQSTTSGGGLRQFSVMVCQKLEAKKITTYKEVADEIISDFATIKQNAEKPLNENEY
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G02 NEKNIRRRVYDALNVFMALDIIARDKKEIRWKGLPITCKKDVEEVKMDRNKVMSSVQKKAAFLKELREKVSSLESLMSRNQEMVVKTQGPAEGFTLPFIL
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
RE_111 NEKNIRRRVYDALNVFMALDIIARDKKEIRWKGLPITCKKDVEEVKMDHNKVMSSVQKKAAFLKELREKVSSLESLMSRNQEMVVKTQGPAEGFTLPFIL
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290
AT5G02 LETNPHAVVEIEISEDMQLVHLDFNSTPFSVHDDAYILKLMQEQKQEQNRVSSSSSTHHQSQHSSAHSSSSSCIASGTSGPVCWNSGSIDTR
::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::
RE_111 LETNPHAVVEIEISEDMQLVHLDFNSTPFSVHDDAYILKLVQEQKQEQNRVSSSSSTHHQSQHSSAHSSSSSCIASGTSGPVCWNSGSIDTR
210 220 230 240 250 260 270 280 290
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