◆◆◆RE_1135 detail◆◆◆

Code name	RE_1135
Locus	AT5G28040
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列100%一致
comment	0311_アミノ酸配列100%一致
sequence	>RE_1135_1281bp ATGGCATCGGATCAACGTGACACTGATTTCTCCGCTGAATCACCAGATCTAGAAGAAGACGGCGGCGGTGGCGGTGGCGGAAGAGGAGGAGGAGAAACTG AATCCGACGAAGATGTTGTTATACCCGAACCAAACGAAGCCGAAGACGACGATCACGATCCCGATCCCGATCCAGAATACGAAGATCTGAATTCTCCGTC AATGATTTCCAGAGCTCCGGCGACGAAATCATCCTCAGGAACCGTAACCGTCGCTCTTCCCGCTGGATCCGCCGTACCTGTAGCTTCAATTCCATCAGAT TCCGATCAGAAATGGCACCGTATGACTGAAATCGTTCATCAGAGACCACCGATTGATGATTCACGACGTTTATTCCAGAGACTATGGACTGACGAAGACG AGATCGAGCTTCTCCGTGGCTTTCTCGATTACATCACAAACCACCGTGGTAACAGCTCTCATCCGCCTGATACGGCGCCGTTTTATGAACAGATTAAATC TAAGCTACAGTTAGAGTTTAATAAGAATCAGCTTGTGGAGAAGCTAAGGAGGTTGAAGAAGAAGTATAGGAATGTTATGAGTAAGTTTAGTTCTGGTAAA GAAGTGTTCTTTAAAAGTCCTCATGATCAAGCTACTTTTGATATCTCTAGGAAGATTTGGAATCAAACTGGGAAAATTATTGGTTTTGAAGATAATAATG TGATGGATTTAGAAGAAACTAATCATGTAAATAACGCGAATGGTAGCTCGGGTTTTAATGTCTCTGTTATCGGTAATGCGAATGTCGATGTTGACTCGGA GAATGGTTTAGAGAAGAAAGTGACGATAAGTAGAAAACGATCACGGTCTAGGATCGGGAAGATCGACGAGGATAAGCCTGTTCTTGCTCCGTGTGACGGG GTGATACCGAATGCGGTTAATCTTAACGAGAATGTGGCTGTTGGTTGTGATTTTGGTGATGGGAGGAATCTTGGAGTGTTGATTGAAGAGACGGTTAAGA ATTGTGTATCGCCCATGATTAAGGAGATGATGAATAGTACGACGGGTATGATGATGGCTGCAACGGGTGGGTTTCCTGGAGGTGGTGCTCATGCTCTCGG TGTGTTGAGTCCGATGCTAATGCCGTCGATGAATTTAGGGTTTGGTGGTAAGGGAGTAGGGGACGAACGGTGGAGGAGACAACAGATTCTTGAGCTGGAA GTGTATTCGAGGAGATTAGAATTGGTTCAAGAACAGATTAGAGCCACGGTGAATGAGTTAAAGACAATGCCTAATGGAGGA >RE_1135_translated MASDQRDTDFSAESPDLEEDGGGGGGGRGGGETESDEDVVIPEPNEAEDDDHDPDPDPEYEDLNSPSMISRAPATKSSSGTVTVALPAGSAVPVASIPSD SDQKWHRMTEIVHQRPPIDDSRRLFQRLWTDEDEIELLRGFLDYITNHRGNSSHPPDTAPFYEQIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKFSSGK EVFFKSPHDQATFDISRKIWNQTGKIIGFEDNNVMDLEETNHVNNANGSSGFNVSVIGNANVDVDSENGLEKKVTISRKRSRSRIGKIDEDKPVLAPCDG VIPNAVNLNENVAVGCDFGDGRNLGVLIEETVKNCVSPMIKEMMNSTTGMMMAATGGFPGGGAHALGVLSPMLMPSMNLGFGGKGVGDERWRRQQILELE VYSRRLELVQEQIRATVNELKTMPNGG
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1280/1281 (99.9%)（アミノ酸配列で100%）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G28 ATGGCATCGGATCAACGTGACACTGATTTCTCCGCTGAATCACCAGATCTAGAAGAAGACGGCGGCGGTGGCGGTGGCGGAAGAGGAGGAGGAGAAACTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_113 ATGGCATCGGATCAACGTGACACTGATTTCTCCGCTGAATCACCAGATCTAGAAGAAGACGGCGGCGGTGGCGGTGGCGGAAGAGGAGGAGGAGAAACTG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G28 AATCCGACGAAGATGTTGTTATACCCGAACCAAACGAAGCCGAAGACGACGATCACGATCCCGATCCCGATCCAGAATACGAAGATCTGAATTCTCCGTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_113 AATCCGACGAAGATGTTGTTATACCCGAACCAAACGAAGCCGAAGACGACGATCACGATCCCGATCCCGATCCAGAATACGAAGATCTGAATTCTCCGTC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G28 AATGATTTCCAGAGCTCCGGCGACGAAATCATCCTCAGGAACCGTAACCGTCGCTCTTCCCGCTGGATCCGCCGTACCTGTAGCTTCAATTCCATCAGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_113 AATGATTTCCAGAGCTCCGGCGACGAAATCATCCTCAGGAACCGTAACCGTCGCTCTTCCCGCTGGATCCGCCGTACCTGTAGCTTCAATTCCATCAGAT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G28 TCCGATCAGAAATGGCACCGTATGACTGAAATCGTTCATCAGAGACCACCGATTGATGATTCACGACGTTTATTCCAGAGACTATGGACTGACGAAGACG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_113 TCCGATCAGAAATGGCACCGTATGACTGAAATCGTTCATCAGAGACCACCGATTGATGATTCACGACGTTTATTCCAGAGACTATGGACTGACGAAGACG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G28 AGATCGAGCTTCTCCGTGGCTTTCTCGATTACATCACAAACCACCGTGGTAACAGCTCTCATCCGCCTGATACGGCGCCGTTTTATGAACAGATTAAATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_113 AGATCGAGCTTCTCCGTGGCTTTCTCGATTACATCACAAACCACCGTGGTAACAGCTCTCATCCGCCTGATACGGCGCCGTTTTATGAACAGATTAAATC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G28 TAAGCTACAGTTAGAGTTTAATAAGAATCAGCTTGTGGAGAAGCTAAGGAGGTTGAAGAAGAAGTATAGGAATGTTATGAGTAAGTTTAGTTCTGGTAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_113 TAAGCTACAGTTAGAGTTTAATAAGAATCAGCTTGTGGAGAAGCTAAGGAGGTTGAAGAAGAAGTATAGGAATGTTATGAGTAAGTTTAGTTCTGGTAAA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G28 GAAGTGTTCTTTAAAAGTCCTCATGATCAAGCTACTTTTGATATCTCTAGGAAGATTTGGAATCAAACTGGGAAAATTATTGGTTTTGAAGATAATAATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_113 GAAGTGTTCTTTAAAAGTCCTCATGATCAAGCTACTTTTGATATCTCTAGGAAGATTTGGAATCAAACTGGGAAAATTATTGGTTTTGAAGATAATAATG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT5G28 TGATGGATTTAGAAGAAACTAATCATGTAAATAACGCGAATGGTAGCTCGGGTTTTAATGTCTCTGTTATCGGTAATGCGAATGTCGATGTTGATTCGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::: RE_113 TGATGGATTTAGAAGAAACTAATCATGTAAATAACGCGAATGGTAGCTCGGGTTTTAATGTCTCTGTTATCGGTAATGCGAATGTCGATGTTGACTCGGA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT5G28 GAATGGTTTAGAGAAGAAAGTGACGATAAGTAGAAAACGATCACGGTCTAGGATCGGGAAGATCGACGAGGATAAGCCTGTTCTTGCTCCGTGTGACGGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_113 GAATGGTTTAGAGAAGAAAGTGACGATAAGTAGAAAACGATCACGGTCTAGGATCGGGAAGATCGACGAGGATAAGCCTGTTCTTGCTCCGTGTGACGGG 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT5G28 GTGATACCGAATGCGGTTAATCTTAACGAGAATGTGGCTGTTGGTTGTGATTTTGGTGATGGGAGGAATCTTGGAGTGTTGATTGAAGAGACGGTTAAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_113 GTGATACCGAATGCGGTTAATCTTAACGAGAATGTGGCTGTTGGTTGTGATTTTGGTGATGGGAGGAATCTTGGAGTGTTGATTGAAGAGACGGTTAAGA 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT5G28 ATTGTGTATCGCCCATGATTAAGGAGATGATGAATAGTACGACGGGTATGATGATGGCTGCAACGGGTGGGTTTCCTGGAGGTGGTGCTCATGCTCTCGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_113 ATTGTGTATCGCCCATGATTAAGGAGATGATGAATAGTACGACGGGTATGATGATGGCTGCAACGGGTGGGTTTCCTGGAGGTGGTGCTCATGCTCTCGG 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT5G28 TGTGTTGAGTCCGATGCTAATGCCGTCGATGAATTTAGGGTTTGGTGGTAAGGGAGTAGGGGACGAACGGTGGAGGAGACAACAGATTCTTGAGCTGGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_113 TGTGTTGAGTCCGATGCTAATGCCGTCGATGAATTTAGGGTTTGGTGGTAAGGGAGTAGGGGACGAACGGTGGAGGAGACAACAGATTCTTGAGCTGGAA 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 AT5G28 GTGTATTCGAGGAGATTAGAATTGGTTCAAGAACAGATTAGAGCCACGGTGAATGAGTTAAAGACAATGCCTAATGGAGGA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_113 GTGTATTCGAGGAGATTAGAATTGGTTCAAGAACAGATTAGAGCCACGGTGAATGAGTTAAAGACAATGCCTAATGGAGGA 1210 1220 1230 1240 1250 1260 1270 1280 10 20 30 40 50 60 70 80 90 100 AT5G28 MASDQRDTDFSAESPDLEEDGGGGGGGRGGGETESDEDVVIPEPNEAEDDDHDPDPDPEYEDLNSPSMISRAPATKSSSGTVTVALPAGSAVPVASIPSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_113 MASDQRDTDFSAESPDLEEDGGGGGGGRGGGETESDEDVVIPEPNEAEDDDHDPDPDPEYEDLNSPSMISRAPATKSSSGTVTVALPAGSAVPVASIPSD 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G28 SDQKWHRMTEIVHQRPPIDDSRRLFQRLWTDEDEIELLRGFLDYITNHRGNSSHPPDTAPFYEQIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKFSSGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_113 SDQKWHRMTEIVHQRPPIDDSRRLFQRLWTDEDEIELLRGFLDYITNHRGNSSHPPDTAPFYEQIKSKLQLEFNKNQLVEKLRRLKKKYRNVMSKFSSGK 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G28 EVFFKSPHDQATFDISRKIWNQTGKIIGFEDNNVMDLEETNHVNNANGSSGFNVSVIGNANVDVDSENGLEKKVTISRKRSRSRIGKIDEDKPVLAPCDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_113 EVFFKSPHDQATFDISRKIWNQTGKIIGFEDNNVMDLEETNHVNNANGSSGFNVSVIGNANVDVDSENGLEKKVTISRKRSRSRIGKIDEDKPVLAPCDG 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G28 VIPNAVNLNENVAVGCDFGDGRNLGVLIEETVKNCVSPMIKEMMNSTTGMMMAATGGFPGGGAHALGVLSPMLMPSMNLGFGGKGVGDERWRRQQILELE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_113 VIPNAVNLNENVAVGCDFGDGRNLGVLIEETVKNCVSPMIKEMMNSTTGMMMAATGGFPGGGAHALGVLSPMLMPSMNLGFGGKGVGDERWRRQQILELE 310 320 330 340 350 360 370 380 390 400 410 420 AT5G28 VYSRRLELVQEQIRATVNELKTMPNGG ::::::::::::::::::::::::::: RE_113 VYSRRLELVQEQIRATVNELKTMPNGG 410 420

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