| Code name | RE_1144 | |||
|---|---|---|---|---|
| Locus | AT5G63280 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | 0115_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_1144_813bp ATGGGAAGACTTTGGGAATCACTGCCCGTGATTCTTCTACTCTTAGTTCTTCTTCTTCATCAATCAGTCTCTCAGGGGTTTGAAGAATCTGAATCTACTA GATTGGTTAACGAAGAAGTAGAAGTTAGTAATGCTCCAGAAATACATTGTTCCCGAGAAAGAAGTCGAGCAGCTTGGCAGATTATACAAGATTATTTGAC GCCATTTGTGGAACGGGAAAGATATGAAATTCCAAAAAATTGTAGGCTGCATCCTGATAATGATTTATACAGGGATCAGGAACATCATAAGGTTCATGTT GATGTCTTCGAATGGAAATGTGGTTACTGCAAGAAAAGTTTCAATGATGAGAAATTTCTTGACAAGCATTTCAGTACTAGACATTATAATCTTTTAAATA CGACTGATACAAAGTGTTTAGCCGACCTGTGTGGTGCATTGCATTGTGACTTTGTATTGAGCTCTAAGAAACCCAAGAGCAAGTGCAACCCTCCTGCTGT TGCCAAAAACCGTCATCTCTGCGAGAGCGTTGCCAATAGTTGTTTCCCAGTGAGTCAAGGTCCCTCAGCTAGTCGTCTTCATGAACACTTTTTGCGCCAA TTCTGTGATGCTCATACCTGCACTGGAAATGATAAACCCTTTCCTAGAGGAGGCAAGAAGAAATCGGGTGTCTTCTACCTCGCCATTTCAATATTGACCT TGGTGCTACTCCCACTCTTTTATCTTCTAGTCTTCTTACATCAAAGAGAAAAGAGAAGCGGAACACAAGATTTGCGTCGTATTATAAAATCTGGAAAAAA AACAAAACCGTCA >RE_1144_translated MGRLWESLPVILLLLVLLLHQSVSQGFEESESTRLVNEEVEVSNAPEIHCSRERSRAAWQIIQDYLTPFVERERYEIPKNCRLHPDNDLYRDQEHHKVHV DVFEWKCGYCKKSFNDEKFLDKHFSTRHYNLLNTTDTKCLADLCGALHCDFVLSSKKPKSKCNPPAVAKNRHLCESVANSCFPVSQGPSASRLHEHFLRQ FCDAHTCTGNDKPFPRGGKKKSGVFYLAISILTLVLLPLFYLLVFLHQREKRSGTQDLRRIIKSGKKTKPS |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 811/813 (99.8%)（アミノ酸配列で270/271 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT5G63 ATGGGAAGACTTTGGGAATCACTGCCCGTGATTCTTCTACTCTTAGTTCTTCTTCTTCATCAATCAGTCTCTCAGGGGTTTGAAGAATCTGAATCTACTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_114 ATGGGAAGACTTTGGGAATCACTGCCCGTGATTCTTCTACTCTTAGTTCTTCTTCTTCATCAATCAGTCTCTCAGGGGTTTGAAGAATCTGAATCTACTA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G63 GATTGGTTAACGAAGAAGTAGAAGTTAGTAATGCTCCAGAAATACATTGTTCCCGAGAAAGAAGTCGAGCAGCTTGGCAGATTATACAAGATTATTTGAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_114 GATTGGTTAACGAAGAAGTAGAAGTTAGTAATGCTCCAGAAATACATTGTTCCCGAGAAAGAAGTCGAGCAGCTTGGCAGATTATACAAGATTATTTGAC
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT5G63 GCCATTTGTGGAACGGGAAAGATATGAAATTCCAAAAAATTGTAGGCTGCATCCTGATAATGATTTATACAGAGATCAGGAACATCATAAGGTTCATGTT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
RE_114 GCCATTTGTGGAACGGGAAAGATATGAAATTCCAAAAAATTGTAGGCTGCATCCTGATAATGATTTATACAGGGATCAGGAACATCATAAGGTTCATGTT
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT5G63 GATGTCTTCGAATGGAAATGTGGTTACTGCAAGAAAAGTTTCAATGATGAGAAATTTCTTGACAAGCATTTCAGTACTAGACATTATAATCTTTTAAATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_114 GATGTCTTCGAATGGAAATGTGGTTACTGCAAGAAAAGTTTCAATGATGAGAAATTTCTTGACAAGCATTTCAGTACTAGACATTATAATCTTTTAAATA
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT5G63 CGACTGATACAAAGTGTTTAGCCGACCTGTGTGGTGCATTGCATTGTGACTTTGTATTGAGCTCTAAGAAACCCAAGAGCAAGTGCAACCCTCCTGCTGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_114 CGACTGATACAAAGTGTTTAGCCGACCTGTGTGGTGCATTGCATTGTGACTTTGTATTGAGCTCTAAGAAACCCAAGAGCAAGTGCAACCCTCCTGCTGT
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT5G63 TGCCAAAAACCGTCATCTCTGCGAGAGCGTTGCCAATAGTTGTTTCCCAGTGAGTCAAGGTCCCTCAGCTAGTCGTCTTCATGAACACTTTTTGCGCCAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_114 TGCCAAAAACCGTCATCTCTGCGAGAGCGTTGCCAATAGTTGTTTCCCAGTGAGTCAAGGTCCCTCAGCTAGTCGTCTTCATGAACACTTTTTGCGCCAA
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT5G63 TTCTGTGATGCTCATACCTGCACTGGAAATGATAAACCCTTTCCTAGAGGAGGCAAGAAGAAATCGGGTGTCTTCTACCTCGCCATTTCAATATTGACCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_114 TTCTGTGATGCTCATACCTGCACTGGAAATGATAAACCCTTTCCTAGAGGAGGCAAGAAGAAATCGGGTGTCTTCTACCTCGCCATTTCAATATTGACCT
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760 770 780 790 800
AT5G63 TGATGCTACTCCCACTCTTTTATCTTCTAGTCTTCTTACATCAAAGAGAAAAGAGAAGCGGAACACAAGATTTGCGTCGTATTATAAAATCTGGAAAAAA
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_114 TGGTGCTACTCCCACTCTTTTATCTTCTAGTCTTCTTACATCAAAGAGAAAAGAGAAGCGGAACACAAGATTTGCGTCGTATTATAAAATCTGGAAAAAA
710 720 730 740 750 760 770 780 790 800
810
AT5G63 AACAAAACCGTCA
:::::::::::::
RE_114 AACAAAACCGTCA
810
10 20 30 40 50 60 70 80 90 100
AT5G63 MGRLWESLPVILLLLVLLLHQSVSQGFEESESTRLVNEEVEVSNAPEIHCSRERSRAAWQIIQDYLTPFVERERYEIPKNCRLHPDNDLYRDQEHHKVHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_114 MGRLWESLPVILLLLVLLLHQSVSQGFEESESTRLVNEEVEVSNAPEIHCSRERSRAAWQIIQDYLTPFVERERYEIPKNCRLHPDNDLYRDQEHHKVHV
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G63 DVFEWKCGYCKKSFNDEKFLDKHFSTRHYNLLNTTDTKCLADLCGALHCDFVLSSKKPKSKCNPPAVAKNRHLCESVANSCFPVSQGPSASRLHEHFLRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_114 DVFEWKCGYCKKSFNDEKFLDKHFSTRHYNLLNTTDTKCLADLCGALHCDFVLSSKKPKSKCNPPAVAKNRHLCESVANSCFPVSQGPSASRLHEHFLRQ
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270
AT5G63 FCDAHTCTGNDKPFPRGGKKKSGVFYLAISILTLMLLPLFYLLVFLHQREKRSGTQDLRRIIKSGKKTKPS
::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
RE_114 FCDAHTCTGNDKPFPRGGKKKSGVFYLAISILTLVLLPLFYLLVFLHQREKRSGTQDLRRIIKSGKKTKPS
210 220 230 240 250 260 270
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