◆◆◆RE_1145 detail◆◆◆

Code nameRE_1145
LocusAT1G01780
Forward primer
Reverse primer
Alignment with TAIR7CDS-
comment
sequence
>RE_1145_801bp
ATGTCATCGTCGACGATGTACAGAGGAGTTAATATGTTTTCACCGGCAAACACAAACTGGATTTTTCAAGAAGTCAGAGAAGCCACGTGGACGGCGGAGG
AGAACAAACGGTTCGAGAAAGCTCTCGCTTATCTGGACGACAAAGACAATCTTGAGAGCTGGTCCAAGATCGCAGATTTGATTCCCGGCAAAACAGTAGC
TGACGTCATTAAACGATACAAGGAGCTAGAGGATGATGTCAGCGACATCGAAGCCGGACTTATCCCCATTCCGGGATACGGCGGCGACGCCTCCTCCGCT
GCAAACAGTGACTATTTCTTTGGTCTAGAAAACTCCAGCTACGGTTATGATTACGTCGTCGGAGGAAAGAGGAGTTCGCCGGCGATGACTGATTGTTTTA
GGTCTCCGATGCCGGAAAAGGAGAGGAAGAAAGGAGTTCCATGGACCGAGGACGAACACCTACGATTTTTGATGGGTTTGAAGAAATATGGAAAAGGAGA
TTGGAGAAACATAGCAAAAAGCTTTGTGACGACTCGAACGCCGACGCAAGTCGCTTCACACGCTCAGAAATATTTTCTTCGACAACTCACAGATGGTAAA
GACAAAAGACGATCAAGTATTCACGATATCACCACTGTTAACATCCCTGACGCAGACGCATCCGCAACCGCCACGACCGCTGACGTAGCACTCTCTCCTA
CTCCAGCCAATTCTTTTGACGTTTTCCTTCAGCCAAATCCTCATTACAGTTTCGCGTCTGCGTCTGCGTCTAGCTATTATAATGCGTTTCCGCAGTGGAG
T

>RE_1145_translated
MSSSTMYRGVNMFSPANTNWIFQEVREATWTAEENKRFEKALAYLDDKDNLESWSKIADLIPGKTVADVIKRYKELEDDVSDIEAGLIPIPGYGGDASSA
ANSDYFFGLENSSYGYDYVVGGKRSSPAMTDCFRSPMPEKERKKGVPWTEDEHLRFLMGLKKYGKGDWRNIAKSFVTTRTPTQVASHAQKYFLRQLTDGK
DKRRSSIHDITTVNIPDADASATATTADVALSPTPANSFDVFLQPNPHYSFASASASSYYNAFPQWS
Alignment CDS(TAIRver.9)_without_stop_codonとのalignment

385/912 (42.2%)(アミノ酸配列で7/445 ( 1.6%))一致しました。

                                                10          20         30                40        50      
AT1G01 ---------------------------------ATGTCTTTCACAGG--AACTCTCGACAAA-TGCAATGTTT------GT--GATAAGACAGTCTATGT
                                        :::: :::::: ::  :::     ::::: ::  :: :::      ::  :: ::: ::        
RE_114 ATGTCATCGTCGACGATGTACAGAGGAGTTAATATGT-TTTCACCGGCAAAC-----ACAAACTG-GATTTTTCAAGAAGTCAGAGAAGCCA--------
               10        20        30         40        50              60        70        80             

         60        70        80            90         100       110        120       130       140         
AT1G01 GGTGGACATGTTGTCCATTGAAGGA----ATGCCTTACCACAA--GTCTTGCTTCAGGTGTACCCATTG-CAAAGGAACCCTTCAGATGAGCAACTATTC
        ::::::     : :    : ::::    :  :  : : : ::   ::: :::: :  :: ::     : :::::  :  ::: :   ::::      : 
RE_114 CGTGGAC-----GGC----GGAGGAGAACAAACGGTTCGAGAAAGCTCTCGCTT-ATCTGGAC-----GACAAAGACAATCTTGA---GAGC------TG
          90                100       110       120       130             140       150                160 

     150       160       170                      180       190       200       210               220      
AT1G01 CTCCATGGACGGAGTTTTGTA----CTGCAAGAC-----------TCATTTTGAGCAACTCTTCAAGGAATCTGGC--------AATTTCAGCAAAA---
        :::: :  :: :: :::: :    : :::: ::           :::::      :::  : ::::::     ::         :: ::::: : :   
RE_114 GTCCAAGATCGCAGATTTG-ATTCCCGGCAAAACAGTAGCTGACGTCATT-----AAACGATACAAGGA-----GCTAGAGGATGATGTCAGCGACATCG
             170       180        190       200       210            220            230       240       250

                   230             240       250                    260                      270           
AT1G01 -------ACTT-TCAACCA-----GGA-AAAACTGAGAAGCC-------------AGAGCTGACTA-------GG--------ACTCCCAGCAA--GATA
              :::: ::  :::     ::: :   : : :: :::             : :: ::::::       ::        ::: ::::: :  : ::
RE_114 AAGCCGGACTTATC-CCCATTCCGGGATACGGCGGCGACGCCTCCTCCGCTGCAAACAG-TGACTATTTCTTTGGTCTAGAAAACT-CCAGCTACGGTTA
              260        270       280       290       300        310       320       330        340       

     280        290       300       310                                 320                                
AT1G01 T-CTTCCATCTTCTGTGGAACACAAGACAAGTGTGCCG-------CT-------------------TGC--GAAAA------------------------
       :  :: : :: :: : :::    ::::  :::  ::::       ::                   :::  :::::                        
RE_114 TGATTACGTCGTCGGAGGA----AAGAGGAGTTCGCCGGCGATGACTGATTGTTTTAGGTCTCCGATGCCGGAAAAGGAGAGGAAGAAAGGAGTTCCATG
       350       360           370       380       390       400       410       420       430       440   

                   330       340                     350         360       370       380                390
AT1G01 -----------AACTGTTTACCCTC--------------TTGAAAAGATACAAATGG--AAGGAGAATGCTTCCACAAGACAT---------GTTTCCGG
                  :::     :::  :              ::::: : ::    ::::  :::::::    ::  : :: ::::          :::   :
RE_114 GACCGAGGACGAAC-----ACCTACGATTTTTGATGGGTTTGAAGAAAT----ATGGAAAAGGAGA----TTGGAGAA-ACATAGCAAAAAGCTTT---G
           450            460       470       480           490       500            510       520         

                400       410          420       430                             440                       
AT1G01 TG-CG-CTCACGGTGGGTGTACGCTGACTCA---CTCCTCCTACGCCTC-----------CTT-----------AGATAG-------------CGTTC-T
       :: :: :::         : :::: ::: ::   : : ::  ::: :::           :::           :::: :             :: ::  
RE_114 TGACGACTC---------GAACGCCGACGCAAGTCGCTTCACACG-CTCAGAAATATTTTCTTCGACAACTCACAGATGGTAAAGACAAAAGACGATCAA
        530                540       550       560        570       580       590       600       610      

     450       460           470       480       490       500         510       520            530        
AT1G01 CTATTGCCGACATCAC----TTTAACCAACTCTTCATGGAGAAAGGAAACTACGCTCACG--TCCTCCAAGCCGCCA--ATCAC---CGTCGCACAGCCT
        ::::  ::: :::::     :::: :: : ::                  ::::  :::  ::: :  : ::::::  : : :   ::: ::::   ::
RE_114 GTATTCACGATATCACCACTGTTAA-CATCCCT-----------------GACGCAGACGCATCCGC--AACCGCCACGACCGCTGACGTAGCACTCTCT
        620       630       640                         650       660         670       680       690      

             540                   550       560                570       580        590       600         
AT1G01 -------CAGGCAACACT------------CTTCCACCGGAACC----TAC-----CGAAGACGTCGCCGT-GGAGGCCAAGGAAGAGAATGGCGTTTC-
              ::: :::  ::            ::::  ::  : ::    :::     ::    ::::  :::  : : : :   :  : ::: ::::::: 
RE_114 CCTACTCCAGCCAATTCTTTTGACGTTTTCCTTCAGCCAAATCCTCATTACAGTTTCG----CGTCTGCGTCTGCGTCTAGCTATTATAAT-GCGTTTCC
        700       710       720       730       740       750           760       770       780        790 

           610     
AT1G01 -----AGAGTCT
             ::::  
RE_114 GCAGTGGAGT--
             800   


               10        20        30        40        50        60        70        80        90       100
AT1G01 MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTHFEQLFKESGNFSKNFQPGKTEKPELTRTPSKISSIFCGT
                                                                                                           
RE_114 ----------------------------------------------------------------------------------------------------
                                                                                                           

              110       120       130       140       150       160       170       180              190   
AT1G01 QDKCAACEKTVYPLEKIQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHRRTASGNTL-------PPEPTEDVA
                                                                                      : .:.        :  :  . 
RE_114 ------------------------------------------------------------------------------MSSSTMYRGVNMFSPANTNWIF
                                                                                             10        20  

           200                                                                                             
AT1G01 VEAKEENGVSES----------------------------------------------------------------------------------------
        : .:    .:                                                                                         
RE_114 QEVREATWTAEENKRFEKALAYLDDKDNLESWSKIADLIPGKTVADVIKRYKELEDDVSDIEAGLIPIPGYGGDASSAANSDYFFGLENSSYGYDYVVGG
             30        40        50        60        70        80        90       100       110       120  

                                                                                                           
AT1G01 ----------------------------------------------------------------------------------------------------
                                                                                                           
RE_114 KRSSPAMTDCFRSPMPEKERKKGVPWTEDEHLRFLMGLKKYGKGDWRNIAKSFVTTRTPTQVASHAQKYFLRQLTDGKDKRRSSIHDITTVNIPDADASA
            130       140       150       160       170       180       190       200       210       220  

                                                    
AT1G01 ---------------------------------------------
                                                    
RE_114 TATTADVALSPTPANSFDVFLQPNPHYSFASASASSYYNAFPQWS
            230       240       250       260       


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