Code name | RE_1145 | |||
---|---|---|---|---|
Locus | AT1G01780 | |||
Forward primer | ||||
Reverse primer | ||||
Alignment with TAIR7CDS | - | |||
comment | ||||
sequence |
>RE_1145_801bp ATGTCATCGTCGACGATGTACAGAGGAGTTAATATGTTTTCACCGGCAAACACAAACTGGATTTTTCAAGAAGTCAGAGAAGCCACGTGGACGGCGGAGG AGAACAAACGGTTCGAGAAAGCTCTCGCTTATCTGGACGACAAAGACAATCTTGAGAGCTGGTCCAAGATCGCAGATTTGATTCCCGGCAAAACAGTAGC TGACGTCATTAAACGATACAAGGAGCTAGAGGATGATGTCAGCGACATCGAAGCCGGACTTATCCCCATTCCGGGATACGGCGGCGACGCCTCCTCCGCT GCAAACAGTGACTATTTCTTTGGTCTAGAAAACTCCAGCTACGGTTATGATTACGTCGTCGGAGGAAAGAGGAGTTCGCCGGCGATGACTGATTGTTTTA GGTCTCCGATGCCGGAAAAGGAGAGGAAGAAAGGAGTTCCATGGACCGAGGACGAACACCTACGATTTTTGATGGGTTTGAAGAAATATGGAAAAGGAGA TTGGAGAAACATAGCAAAAAGCTTTGTGACGACTCGAACGCCGACGCAAGTCGCTTCACACGCTCAGAAATATTTTCTTCGACAACTCACAGATGGTAAA GACAAAAGACGATCAAGTATTCACGATATCACCACTGTTAACATCCCTGACGCAGACGCATCCGCAACCGCCACGACCGCTGACGTAGCACTCTCTCCTA CTCCAGCCAATTCTTTTGACGTTTTCCTTCAGCCAAATCCTCATTACAGTTTCGCGTCTGCGTCTGCGTCTAGCTATTATAATGCGTTTCCGCAGTGGAG T >RE_1145_translated MSSSTMYRGVNMFSPANTNWIFQEVREATWTAEENKRFEKALAYLDDKDNLESWSKIADLIPGKTVADVIKRYKELEDDVSDIEAGLIPIPGYGGDASSA ANSDYFFGLENSSYGYDYVVGGKRSSPAMTDCFRSPMPEKERKKGVPWTEDEHLRFLMGLKKYGKGDWRNIAKSFVTTRTPTQVASHAQKYFLRQLTDGK DKRRSSIHDITTVNIPDADASATATTADVALSPTPANSFDVFLQPNPHYSFASASASSYYNAFPQWS |
|||
Alignment |
◆CDS(TAIRver.9)_without_stop_codonとのalignment◆ 385/912 (42.2%)(アミノ酸配列で7/445 ( 1.6%))一致しました。 10 20 30 40 50 AT1G01 ---------------------------------ATGTCTTTCACAGG--AACTCTCGACAAA-TGCAATGTTT------GT--GATAAGACAGTCTATGT :::: :::::: :: ::: ::::: :: :: ::: :: :: ::: :: RE_114 ATGTCATCGTCGACGATGTACAGAGGAGTTAATATGT-TTTCACCGGCAAAC-----ACAAACTG-GATTTTTCAAGAAGTCAGAGAAGCCA-------- 10 20 30 40 50 60 70 80 60 70 80 90 100 110 120 130 140 AT1G01 GGTGGACATGTTGTCCATTGAAGGA----ATGCCTTACCACAA--GTCTTGCTTCAGGTGTACCCATTG-CAAAGGAACCCTTCAGATGAGCAACTATTC :::::: : : : :::: : : : : : :: ::: :::: : :: :: : ::::: : ::: : :::: : RE_114 CGTGGAC-----GGC----GGAGGAGAACAAACGGTTCGAGAAAGCTCTCGCTT-ATCTGGAC-----GACAAAGACAATCTTGA---GAGC------TG 90 100 110 120 130 140 150 160 150 160 170 180 190 200 210 220 AT1G01 CTCCATGGACGGAGTTTTGTA----CTGCAAGAC-----------TCATTTTGAGCAACTCTTCAAGGAATCTGGC--------AATTTCAGCAAAA--- :::: : :: :: :::: : : :::: :: ::::: ::: : :::::: :: :: ::::: : : RE_114 GTCCAAGATCGCAGATTTG-ATTCCCGGCAAAACAGTAGCTGACGTCATT-----AAACGATACAAGGA-----GCTAGAGGATGATGTCAGCGACATCG 170 180 190 200 210 220 230 240 250 230 240 250 260 270 AT1G01 -------ACTT-TCAACCA-----GGA-AAAACTGAGAAGCC-------------AGAGCTGACTA-------GG--------ACTCCCAGCAA--GATA :::: :: ::: ::: : : : :: ::: : :: :::::: :: ::: ::::: : : :: RE_114 AAGCCGGACTTATC-CCCATTCCGGGATACGGCGGCGACGCCTCCTCCGCTGCAAACAG-TGACTATTTCTTTGGTCTAGAAAACT-CCAGCTACGGTTA 260 270 280 290 300 310 320 330 340 280 290 300 310 320 AT1G01 T-CTTCCATCTTCTGTGGAACACAAGACAAGTGTGCCG-------CT-------------------TGC--GAAAA------------------------ : :: : :: :: : ::: :::: ::: :::: :: ::: ::::: RE_114 TGATTACGTCGTCGGAGGA----AAGAGGAGTTCGCCGGCGATGACTGATTGTTTTAGGTCTCCGATGCCGGAAAAGGAGAGGAAGAAAGGAGTTCCATG 350 360 370 380 390 400 410 420 430 440 330 340 350 360 370 380 390 AT1G01 -----------AACTGTTTACCCTC--------------TTGAAAAGATACAAATGG--AAGGAGAATGCTTCCACAAGACAT---------GTTTCCGG ::: ::: : ::::: : :: :::: ::::::: :: : :: :::: ::: : RE_114 GACCGAGGACGAAC-----ACCTACGATTTTTGATGGGTTTGAAGAAAT----ATGGAAAAGGAGA----TTGGAGAA-ACATAGCAAAAAGCTTT---G 450 460 470 480 490 500 510 520 400 410 420 430 440 AT1G01 TG-CG-CTCACGGTGGGTGTACGCTGACTCA---CTCCTCCTACGCCTC-----------CTT-----------AGATAG-------------CGTTC-T :: :: ::: : :::: ::: :: : : :: ::: ::: ::: :::: : :: :: RE_114 TGACGACTC---------GAACGCCGACGCAAGTCGCTTCACACG-CTCAGAAATATTTTCTTCGACAACTCACAGATGGTAAAGACAAAAGACGATCAA 530 540 550 560 570 580 590 600 610 450 460 470 480 490 500 510 520 530 AT1G01 CTATTGCCGACATCAC----TTTAACCAACTCTTCATGGAGAAAGGAAACTACGCTCACG--TCCTCCAAGCCGCCA--ATCAC---CGTCGCACAGCCT :::: ::: ::::: :::: :: : :: :::: ::: ::: : : :::::: : : : ::: :::: :: RE_114 GTATTCACGATATCACCACTGTTAA-CATCCCT-----------------GACGCAGACGCATCCGC--AACCGCCACGACCGCTGACGTAGCACTCTCT 620 630 640 650 660 670 680 690 540 550 560 570 580 590 600 AT1G01 -------CAGGCAACACT------------CTTCCACCGGAACC----TAC-----CGAAGACGTCGCCGT-GGAGGCCAAGGAAGAGAATGGCGTTTC- ::: ::: :: :::: :: : :: ::: :: :::: ::: : : : : : : ::: ::::::: RE_114 CCTACTCCAGCCAATTCTTTTGACGTTTTCCTTCAGCCAAATCCTCATTACAGTTTCG----CGTCTGCGTCTGCGTCTAGCTATTATAAT-GCGTTTCC 700 710 720 730 740 750 760 770 780 790 610 AT1G01 -----AGAGTCT :::: RE_114 GCAGTGGAGT-- 800 10 20 30 40 50 60 70 80 90 100 AT1G01 MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTHFEQLFKESGNFSKNFQPGKTEKPELTRTPSKISSIFCGT RE_114 ---------------------------------------------------------------------------------------------------- 110 120 130 140 150 160 170 180 190 AT1G01 QDKCAACEKTVYPLEKIQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHRRTASGNTL-------PPEPTEDVA : .:. : : . RE_114 ------------------------------------------------------------------------------MSSSTMYRGVNMFSPANTNWIF 10 20 200 AT1G01 VEAKEENGVSES---------------------------------------------------------------------------------------- : .: .: RE_114 QEVREATWTAEENKRFEKALAYLDDKDNLESWSKIADLIPGKTVADVIKRYKELEDDVSDIEAGLIPIPGYGGDASSAANSDYFFGLENSSYGYDYVVGG 30 40 50 60 70 80 90 100 110 120 AT1G01 ---------------------------------------------------------------------------------------------------- RE_114 KRSSPAMTDCFRSPMPEKERKKGVPWTEDEHLRFLMGLKKYGKGDWRNIAKSFVTTRTPTQVASHAQKYFLRQLTDGKDKRRSSIHDITTVNIPDADASA 130 140 150 160 170 180 190 200 210 220 AT1G01 --------------------------------------------- RE_114 TATTADVALSPTPANSFDVFLQPNPHYSFASASASSYYNAFPQWS 230 240 250 260 |