| Code name | RE_1145 | |||
|---|---|---|---|---|
| Locus | AT1G01780 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | - | |||
| comment | ||||
| sequence |
>RE_1145_801bp ATGTCATCGTCGACGATGTACAGAGGAGTTAATATGTTTTCACCGGCAAACACAAACTGGATTTTTCAAGAAGTCAGAGAAGCCACGTGGACGGCGGAGG AGAACAAACGGTTCGAGAAAGCTCTCGCTTATCTGGACGACAAAGACAATCTTGAGAGCTGGTCCAAGATCGCAGATTTGATTCCCGGCAAAACAGTAGC TGACGTCATTAAACGATACAAGGAGCTAGAGGATGATGTCAGCGACATCGAAGCCGGACTTATCCCCATTCCGGGATACGGCGGCGACGCCTCCTCCGCT GCAAACAGTGACTATTTCTTTGGTCTAGAAAACTCCAGCTACGGTTATGATTACGTCGTCGGAGGAAAGAGGAGTTCGCCGGCGATGACTGATTGTTTTA GGTCTCCGATGCCGGAAAAGGAGAGGAAGAAAGGAGTTCCATGGACCGAGGACGAACACCTACGATTTTTGATGGGTTTGAAGAAATATGGAAAAGGAGA TTGGAGAAACATAGCAAAAAGCTTTGTGACGACTCGAACGCCGACGCAAGTCGCTTCACACGCTCAGAAATATTTTCTTCGACAACTCACAGATGGTAAA GACAAAAGACGATCAAGTATTCACGATATCACCACTGTTAACATCCCTGACGCAGACGCATCCGCAACCGCCACGACCGCTGACGTAGCACTCTCTCCTA CTCCAGCCAATTCTTTTGACGTTTTCCTTCAGCCAAATCCTCATTACAGTTTCGCGTCTGCGTCTGCGTCTAGCTATTATAATGCGTTTCCGCAGTGGAG T >RE_1145_translated MSSSTMYRGVNMFSPANTNWIFQEVREATWTAEENKRFEKALAYLDDKDNLESWSKIADLIPGKTVADVIKRYKELEDDVSDIEAGLIPIPGYGGDASSA ANSDYFFGLENSSYGYDYVVGGKRSSPAMTDCFRSPMPEKERKKGVPWTEDEHLRFLMGLKKYGKGDWRNIAKSFVTTRTPTQVASHAQKYFLRQLTDGK DKRRSSIHDITTVNIPDADASATATTADVALSPTPANSFDVFLQPNPHYSFASASASSYYNAFPQWS |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 385/912 (42.2%)（アミノ酸配列で7/445 ( 1.6%)）一致しました。
10 20 30 40 50
AT1G01 ---------------------------------ATGTCTTTCACAGG--AACTCTCGACAAA-TGCAATGTTT------GT--GATAAGACAGTCTATGT
:::: :::::: :: ::: ::::: :: :: ::: :: :: ::: ::
RE_114 ATGTCATCGTCGACGATGTACAGAGGAGTTAATATGT-TTTCACCGGCAAAC-----ACAAACTG-GATTTTTCAAGAAGTCAGAGAAGCCA--------
10 20 30 40 50 60 70 80
60 70 80 90 100 110 120 130 140
AT1G01 GGTGGACATGTTGTCCATTGAAGGA----ATGCCTTACCACAA--GTCTTGCTTCAGGTGTACCCATTG-CAAAGGAACCCTTCAGATGAGCAACTATTC
:::::: : : : :::: : : : : : :: ::: :::: : :: :: : ::::: : ::: : :::: :
RE_114 CGTGGAC-----GGC----GGAGGAGAACAAACGGTTCGAGAAAGCTCTCGCTT-ATCTGGAC-----GACAAAGACAATCTTGA---GAGC------TG
90 100 110 120 130 140 150 160
150 160 170 180 190 200 210 220
AT1G01 CTCCATGGACGGAGTTTTGTA----CTGCAAGAC-----------TCATTTTGAGCAACTCTTCAAGGAATCTGGC--------AATTTCAGCAAAA---
:::: : :: :: :::: : : :::: :: ::::: ::: : :::::: :: :: ::::: : :
RE_114 GTCCAAGATCGCAGATTTG-ATTCCCGGCAAAACAGTAGCTGACGTCATT-----AAACGATACAAGGA-----GCTAGAGGATGATGTCAGCGACATCG
170 180 190 200 210 220 230 240 250
230 240 250 260 270
AT1G01 -------ACTT-TCAACCA-----GGA-AAAACTGAGAAGCC-------------AGAGCTGACTA-------GG--------ACTCCCAGCAA--GATA
:::: :: ::: ::: : : : :: ::: : :: :::::: :: ::: ::::: : : ::
RE_114 AAGCCGGACTTATC-CCCATTCCGGGATACGGCGGCGACGCCTCCTCCGCTGCAAACAG-TGACTATTTCTTTGGTCTAGAAAACT-CCAGCTACGGTTA
260 270 280 290 300 310 320 330 340
280 290 300 310 320
AT1G01 T-CTTCCATCTTCTGTGGAACACAAGACAAGTGTGCCG-------CT-------------------TGC--GAAAA------------------------
: :: : :: :: : ::: :::: ::: :::: :: ::: :::::
RE_114 TGATTACGTCGTCGGAGGA----AAGAGGAGTTCGCCGGCGATGACTGATTGTTTTAGGTCTCCGATGCCGGAAAAGGAGAGGAAGAAAGGAGTTCCATG
350 360 370 380 390 400 410 420 430 440
330 340 350 360 370 380 390
AT1G01 -----------AACTGTTTACCCTC--------------TTGAAAAGATACAAATGG--AAGGAGAATGCTTCCACAAGACAT---------GTTTCCGG
::: ::: : ::::: : :: :::: ::::::: :: : :: :::: ::: :
RE_114 GACCGAGGACGAAC-----ACCTACGATTTTTGATGGGTTTGAAGAAAT----ATGGAAAAGGAGA----TTGGAGAA-ACATAGCAAAAAGCTTT---G
450 460 470 480 490 500 510 520
400 410 420 430 440
AT1G01 TG-CG-CTCACGGTGGGTGTACGCTGACTCA---CTCCTCCTACGCCTC-----------CTT-----------AGATAG-------------CGTTC-T
:: :: ::: : :::: ::: :: : : :: ::: ::: ::: :::: : :: ::
RE_114 TGACGACTC---------GAACGCCGACGCAAGTCGCTTCACACG-CTCAGAAATATTTTCTTCGACAACTCACAGATGGTAAAGACAAAAGACGATCAA
530 540 550 560 570 580 590 600 610
450 460 470 480 490 500 510 520 530
AT1G01 CTATTGCCGACATCAC----TTTAACCAACTCTTCATGGAGAAAGGAAACTACGCTCACG--TCCTCCAAGCCGCCA--ATCAC---CGTCGCACAGCCT
:::: ::: ::::: :::: :: : :: :::: ::: ::: : : :::::: : : : ::: :::: ::
RE_114 GTATTCACGATATCACCACTGTTAA-CATCCCT-----------------GACGCAGACGCATCCGC--AACCGCCACGACCGCTGACGTAGCACTCTCT
620 630 640 650 660 670 680 690
540 550 560 570 580 590 600
AT1G01 -------CAGGCAACACT------------CTTCCACCGGAACC----TAC-----CGAAGACGTCGCCGT-GGAGGCCAAGGAAGAGAATGGCGTTTC-
::: ::: :: :::: :: : :: ::: :: :::: ::: : : : : : : ::: :::::::
RE_114 CCTACTCCAGCCAATTCTTTTGACGTTTTCCTTCAGCCAAATCCTCATTACAGTTTCG----CGTCTGCGTCTGCGTCTAGCTATTATAAT-GCGTTTCC
700 710 720 730 740 750 760 770 780 790
610
AT1G01 -----AGAGTCT
::::
RE_114 GCAGTGGAGT--
800
10 20 30 40 50 60 70 80 90 100
AT1G01 MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTHFEQLFKESGNFSKNFQPGKTEKPELTRTPSKISSIFCGT
RE_114 ----------------------------------------------------------------------------------------------------
110 120 130 140 150 160 170 180 190
AT1G01 QDKCAACEKTVYPLEKIQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHRRTASGNTL-------PPEPTEDVA
: .:. : : .
RE_114 ------------------------------------------------------------------------------MSSSTMYRGVNMFSPANTNWIF
10 20
200
AT1G01 VEAKEENGVSES----------------------------------------------------------------------------------------
: .: .:
RE_114 QEVREATWTAEENKRFEKALAYLDDKDNLESWSKIADLIPGKTVADVIKRYKELEDDVSDIEAGLIPIPGYGGDASSAANSDYFFGLENSSYGYDYVVGG
30 40 50 60 70 80 90 100 110 120
AT1G01 ----------------------------------------------------------------------------------------------------
RE_114 KRSSPAMTDCFRSPMPEKERKKGVPWTEDEHLRFLMGLKKYGKGDWRNIAKSFVTTRTPTQVASHAQKYFLRQLTDGKDKRRSSIHDITTVNIPDADASA
130 140 150 160 170 180 190 200 210 220
AT1G01 ---------------------------------------------
RE_114 TATTADVALSPTPANSFDVFLQPNPHYSFASASASSYYNAFPQWS
230 240 250 260
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