| Code name | RE_1154 | |||
|---|---|---|---|---|
| Locus | AT1G24260 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.20%一致 | |||
| comment | 0115_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_1154_753bp ATGGGAAGAGGGAGAGTAGAATTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTGACGTTTGCAAAGAGAAGGAATGGTCTTTTGAAGAAAGCATACG AGCTTTCAGTTCTATGTGATGCAGAAGTTGCTCTCATCATCTTCTCAAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCGAGCATGCTTCGGACACT GGAGAGGTACCAAAAGTGTAACTATGGAGCACCAGAACCCAATGTGCCTTCAAGAGAGGCCTTAGCAGTTGAACTTAGTAGCCAGCAGGAGTATCTCAAG CTTAAGGAGCGTTATGACGCCTCACAGAGAACCCAAAGGAATCTGTTGGGAGAAGATCTTGGACCTCTAAGTACAAAGGAGCTTGAGTCACTTGAGAGAC AGCTTGATTCTTCCTTGAAGCAGATCAGAGCTCTCAGGACACAGTTTATGCTTGACCAGCTCAACGATCTTCAGAGTAAGGAACGCATGCTGACTGAGAC AAATAAAACTCTAAGACTAAGGTTAGCTGATGGGTATCAGATGCCACTCCAGCTGAACCCTAACCAAGAAGAGGTTGATCACTACGGTCGTCATCATCAT CAACAACAACAACACTCCCAAGCTTTCTTCCAGCCTTTGGAATGTGAACCCATTCTTCAGATCGGGTATCAGGGGCAACAAGATGGAATGGGAGCAGGAC CAAGTGTGAATAATTACATGTTGGGTTGGTTACCTTATGACACCAACTCTATT >RE_1154_translated MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLK LKERYDASQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQMPLQLNPNQEEVDHYGRHHH QQQQHSQAFFQPLECEPILQIGYQGQQDGMGAGPSVNNYMLGWLPYDTNSI |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 749/753 (99.5%)（アミノ酸配列で249/251 (99.2%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT1G24 ATGGGAAGAGGGAGAGTAGAATTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTGACGTTTGCAAAGAGAAGGAATGGTCTTTTGAAGAAAGCATACG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_115 ATGGGAAGAGGGAGAGTAGAATTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTGACGTTTGCAAAGAGAAGGAATGGTCTTTTGAAGAAAGCATACG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT1G24 AGCTTTCAGTTCTATGTGATGCAGAAGTTGCTCTCATCATCTTCTCAAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCGAGCATGCTTCGGACACT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_115 AGCTTTCAGTTCTATGTGATGCAGAAGTTGCTCTCATCATCTTCTCAAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCGAGCATGCTTCGGACACT
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290
AT1G24 GGAGAGGTACCAAAAGTGTAACTATGGAGCACCAGAACCCAATGTGCCTTCAAGAGAGGCCTTAGCA---GAACTTAGTAGCCAGCAGGAGTATCTCAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
RE_115 GGAGAGGTACCAAAAGTGTAACTATGGAGCACCAGAACCCAATGTGCCTTCAAGAGAGGCCTTAGCAGTTGAACTTAGTAGCCAGCAGGAGTATCTCAAG
210 220 230 240 250 260 270 280 290 300
300 310 320 330 340 350 360 370 380 390
AT1G24 CTTAAGGAGCGTTATGACGCCTTACAGAGAACCCAAAGGAATCTGTTGGGAGAAGATCTTGGACCTCTAAGTACAAAGGAGCTTGAGTCACTTGAGAGAC
:::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_115 CTTAAGGAGCGTTATGACGCCTCACAGAGAACCCAAAGGAATCTGTTGGGAGAAGATCTTGGACCTCTAAGTACAAAGGAGCTTGAGTCACTTGAGAGAC
310 320 330 340 350 360 370 380 390 400
400 410 420 430 440 450 460 470 480 490
AT1G24 AGCTTGATTCTTCCTTGAAGCAGATCAGAGCTCTCAGGACACAGTTTATGCTTGACCAGCTCAACGATCTTCAGAGTAAGGAACGCATGCTGACTGAGAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_115 AGCTTGATTCTTCCTTGAAGCAGATCAGAGCTCTCAGGACACAGTTTATGCTTGACCAGCTCAACGATCTTCAGAGTAAGGAACGCATGCTGACTGAGAC
410 420 430 440 450 460 470 480 490 500
500 510 520 530 540 550 560 570 580 590
AT1G24 AAATAAAACTCTAAGACTAAGGTTAGCTGATGGGTATCAGATGCCACTCCAGCTGAACCCTAACCAAGAAGAGGTTGATCACTACGGTCGTCATCATCAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_115 AAATAAAACTCTAAGACTAAGGTTAGCTGATGGGTATCAGATGCCACTCCAGCTGAACCCTAACCAAGAAGAGGTTGATCACTACGGTCGTCATCATCAT
510 520 530 540 550 560 570 580 590 600
600 610 620 630 640 650 660 670 680 690
AT1G24 CAACAACAACAACACTCCCAAGCTTTCTTCCAGCCTTTGGAATGTGAACCCATTCTTCAGATCGGGTATCAGGGGCAACAAGATGGAATGGGAGCAGGAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_115 CAACAACAACAACACTCCCAAGCTTTCTTCCAGCCTTTGGAATGTGAACCCATTCTTCAGATCGGGTATCAGGGGCAACAAGATGGAATGGGAGCAGGAC
610 620 630 640 650 660 670 680 690 700
700 710 720 730 740 750
AT1G24 CAAGTGTGAATAATTACATGTTGGGTTGGTTACCTTATGACACCAACTCTATT
:::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_115 CAAGTGTGAATAATTACATGTTGGGTTGGTTACCTTATGACACCAACTCTATT
710 720 730 740 750
10 20 30 40 50 60 70 80 90
AT1G24 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLRTLERYQKCNYGAPEPNVPSREALA-ELSSQQEYLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::
RE_115 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLK
10 20 30 40 50 60 70 80 90 100
100 110 120 130 140 150 160 170 180 190
AT1G24 LKERYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQMPLQLNPNQEEVDHYGRHHH
::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_115 LKERYDASQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQMPLQLNPNQEEVDHYGRHHH
110 120 130 140 150 160 170 180 190 200
200 210 220 230 240 250
AT1G24 QQQQHSQAFFQPLECEPILQIGYQGQQDGMGAGPSVNNYMLGWLPYDTNSI
:::::::::::::::::::::::::::::::::::::::::::::::::::
RE_115 QQQQHSQAFFQPLECEPILQIGYQGQQDGMGAGPSVNNYMLGWLPYDTNSI
210 220 230 240 250
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