◆◆◆RE_1184 detail◆◆◆

Code name	RE_1184
Locus	AT5G62470
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.10%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_1184_1056bp ATGGGAAGACCACCTTGCTGTGAAAAGATTGGAGTGAAGAAAGGGCCATGGACACTAGAGGAAGACATCATCTTGGTTTCTTACATCCAAGAACATGGTC CTGGAAACTGGAGATCTGTCCCAACACACACAGGTTTGAGAAGATGTAGCAAGAGCTGCAGATTGAGATGGACTAATTATCTTCGACCCGGTATTAAGCG TGGAAATTTTACTGAGCATGAAGAGAAGACAATTGTTCATCTTCAAGCCCTTTTAGGCAACAGATGGGCAGCCATAGCATCATACCTTCCAGAAAGGACA GACAATGATATAAAGAACTATTGGAACACTCACTTGAAGAAGAAGCTCAAAAAGATTAATGAATCTGGTGAAGAAGATAATGATGGTGTCTCTTCATCAA ACACTAGTTCACAAAAGAACCATCAAAGCACTAACAAAGGTCAATGGGAAAGAAGACTTCAGACAGACATTAACATGGCAAAACAAGCTCTTTGTGAGGC CTTGTCTTTAGACAAACCATCATCCACTCTTTCATCATCTTCACCATTACCGACACCAGTAATCACACAACAAAACATCCGTAACTTCTCATCAGCTTTG CTTGACCGTTGTTATGATCCATCCTCTTCTTCTTCATCTACCACAACCACCACTACAAGCAACACTACTAATCCATACCCATCAGGGGTATATGCGTCAA GTGCTGAGAACATCGCCCGGTTGCTTCAAGATTTCATGAAAGACACACCCAAGGCTTTAACTTTATCATCTTCATCTCCGGTTTCAGAGACTGGACCACT CACTGCTGCAGTCTCGGAAGAAGGTGGAGAAGGGTTTGAACAATCTTTCTTCAGCTTCAATTCAATGGACGAAACTCAAAACTTGACTCAGGAGACAAGC TTCTTCCATGATCAAGTGATCAAACCGGAAATAACAATGGACCAAGATCATGGTCTAATATCACAAGGGTCTCTGTCTTTGTTTGAGAAATGGTTATTTG ATGAGCAAAGCCACGAGATGGTTGGTATGGCACTAGCAGGACAAGAAGGGATGTTC >RE_1184_translated MGRPPCCEKIGVKKGPWTLEEDIILVSYIQEHGPGNWRSVPTHTGLRRCSKSCRLRWTNYLRPGIKRGNFTEHEEKTIVHLQALLGNRWAAIASYLPERT DNDIKNYWNTHLKKKLKKINESGEEDNDGVSSSNTSSQKNHQSTNKGQWERRLQTDINMAKQALCEALSLDKPSSTLSSSSPLPTPVITQQNIRNFSSAL LDRCYDPSSSSSSTTTTTTSNTTNPYPSGVYASSAENIARLLQDFMKDTPKALTLSSSSPVSETGPLTAAVSEEGGEGFEQSFFSFNSMDETQNLTQETS FFHDQVIKPEITMDQDHGLISQGSLSLFEKWLFDEQSHEMVGMALAGQEGMF
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1051/1056 (99.5%)（アミノ酸配列で349/352 (99.1%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G62 ATGGGAAGACCACCTTGCTGTGAAAAGATTGGAGTGAAGAAAGGGCCATGGACACCAGAGGAAGACATCATCTTGGTTTCTTACATCCAAGAACATGGTC ::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::: RE_118 ATGGGAAGACCACCTTGCTGTGAAAAGATTGGAGTGAAGAAAGGGCCATGGACACTAGAGGAAGACATCATCTTGGTTTCTTACATCCAAGAACATGGTC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 AT5G62 CTGGAAACTGGAGATCTGTCCCAACACACACAGGTTT---AAGATGTAGCAAGAGCTGCAGATTGAGATGGACTAATTATCTTCGACCCGGTATTAAGCG ::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 CTGGAAACTGGAGATCTGTCCCAACACACACAGGTTTGAGAAGATGTAGCAAGAGCTGCAGATTGAGATGGACTAATTATCTTCGACCCGGTATTAAGCG 110 120 130 140 150 160 170 180 190 200 200 210 220 230 240 250 260 270 280 290 AT5G62 TGGAAATTTTACTGAGCATGAAGAGAAGACAATTGTTCATCTTCAAGCCCTTTTAGGCAACAGATGGGCAGCCATAGCATCATACCTTCCAGAAAGGACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 TGGAAATTTTACTGAGCATGAAGAGAAGACAATTGTTCATCTTCAAGCCCTTTTAGGCAACAGATGGGCAGCCATAGCATCATACCTTCCAGAAAGGACA 210 220 230 240 250 260 270 280 290 300 300 310 320 330 340 350 360 370 380 390 AT5G62 GACAATGATATAAAGAACTATTGGAACACTCACTTGAAGAAGAAGCTCAAAAAGATTAATGAATCTGGTGAAGAAGATAATGATGGTGTCTCTTCATCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 GACAATGATATAAAGAACTATTGGAACACTCACTTGAAGAAGAAGCTCAAAAAGATTAATGAATCTGGTGAAGAAGATAATGATGGTGTCTCTTCATCAA 310 320 330 340 350 360 370 380 390 400 400 410 420 430 440 450 460 470 480 490 AT5G62 ACACTAGTTCACAAAAGAACCATCAAAGCACTAACAAAGGTCAATGGGAAAGAAGACTTCAGACAGACATTAACATGGCAAAACAAGCTCTTTGTGAGGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 ACACTAGTTCACAAAAGAACCATCAAAGCACTAACAAAGGTCAATGGGAAAGAAGACTTCAGACAGACATTAACATGGCAAAACAAGCTCTTTGTGAGGC 410 420 430 440 450 460 470 480 490 500 500 510 520 530 540 550 560 570 580 590 AT5G62 CTTGTCTTTAGACAAACCATCATCCACTCTTTCATCATCTTCATCATTACCGACACCAGTAATCACACAACAAAACATCCGTAACTTCTCATCAGCTTTG ::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 CTTGTCTTTAGACAAACCATCATCCACTCTTTCATCATCTTCACCATTACCGACACCAGTAATCACACAACAAAACATCCGTAACTTCTCATCAGCTTTG 510 520 530 540 550 560 570 580 590 600 600 610 620 630 640 650 660 670 680 690 AT5G62 CTTGACCGTTGTTATGATCCATCCTCTTCTTCTTCATCTACCACAACCACCACTACAAGCAACACTACTAATCCATACCCATCAGGGGTATATGCGTCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 CTTGACCGTTGTTATGATCCATCCTCTTCTTCTTCATCTACCACAACCACCACTACAAGCAACACTACTAATCCATACCCATCAGGGGTATATGCGTCAA 610 620 630 640 650 660 670 680 690 700 700 710 720 730 740 750 760 770 780 790 AT5G62 GTGCTGAGAACATCGCCCGGTTGCTTCAAGATTTCATGAAAGACACACCCAAGGCTTTAACTTTATCATCTTCATCTCCGGTTTCAGAGACTGGACCACT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 GTGCTGAGAACATCGCCCGGTTGCTTCAAGATTTCATGAAAGACACACCCAAGGCTTTAACTTTATCATCTTCATCTCCGGTTTCAGAGACTGGACCACT 710 720 730 740 750 760 770 780 790 800 800 810 820 830 840 850 860 870 880 890 AT5G62 CACTGCTGCAGTCTCGGAAGAAGGTGGAGAAGGGTTTGAACAATCTTTCTTCAGCTTCAATTCAATGGACGAAACTCAAAACTTGACTCAGGAGACAAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 CACTGCTGCAGTCTCGGAAGAAGGTGGAGAAGGGTTTGAACAATCTTTCTTCAGCTTCAATTCAATGGACGAAACTCAAAACTTGACTCAGGAGACAAGC 810 820 830 840 850 860 870 880 890 900 900 910 920 930 940 950 960 970 980 990 AT5G62 TTCTTCCATGATCAAGTGATCAAACCGGAAATAACAATGGACCAAGATCATGGTCTAATATCACAAGGGTCTCTGTCTTTGTTTGAGAAATGGTTATTTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 TTCTTCCATGATCAAGTGATCAAACCGGAAATAACAATGGACCAAGATCATGGTCTAATATCACAAGGGTCTCTGTCTTTGTTTGAGAAATGGTTATTTG 910 920 930 940 950 960 970 980 990 1000 1000 1010 1020 1030 1040 1050 AT5G62 ATGAGCAAAGCCACGAGATGGTTGGTATGGCACTAGCAGGACAAGAAGGGATGTTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 ATGAGCAAAGCCACGAGATGGTTGGTATGGCACTAGCAGGACAAGAAGGGATGTTC 1010 1020 1030 1040 1050 10 20 30 40 50 60 70 80 90 AT5G62 MGRPPCCEKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTHTGL-RCSKSCRLRWTNYLRPGIKRGNFTEHEEKTIVHLQALLGNRWAAIASYLPERT :::::::::::::::::: ::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 MGRPPCCEKIGVKKGPWTLEEDIILVSYIQEHGPGNWRSVPTHTGLRRCSKSCRLRWTNYLRPGIKRGNFTEHEEKTIVHLQALLGNRWAAIASYLPERT 10 20 30 40 50 60 70 80 90 100 100 110 120 130 140 150 160 170 180 190 AT5G62 DNDIKNYWNTHLKKKLKKINESGEEDNDGVSSSNTSSQKNHQSTNKGQWERRLQTDINMAKQALCEALSLDKPSSTLSSSSSLPTPVITQQNIRNFSSAL ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::: RE_118 DNDIKNYWNTHLKKKLKKINESGEEDNDGVSSSNTSSQKNHQSTNKGQWERRLQTDINMAKQALCEALSLDKPSSTLSSSSPLPTPVITQQNIRNFSSAL 110 120 130 140 150 160 170 180 190 200 200 210 220 230 240 250 260 270 280 290 AT5G62 LDRCYDPSSSSSSTTTTTTSNTTNPYPSGVYASSAENIARLLQDFMKDTPKALTLSSSSPVSETGPLTAAVSEEGGEGFEQSFFSFNSMDETQNLTQETS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 LDRCYDPSSSSSSTTTTTTSNTTNPYPSGVYASSAENIARLLQDFMKDTPKALTLSSSSPVSETGPLTAAVSEEGGEGFEQSFFSFNSMDETQNLTQETS 210 220 230 240 250 260 270 280 290 300 300 310 320 330 340 350 AT5G62 FFHDQVIKPEITMDQDHGLISQGSLSLFEKWLFDEQSHEMVGMALAGQEGMF :::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 FFHDQVIKPEITMDQDHGLISQGSLSLFEKWLFDEQSHEMVGMALAGQEGMF 310 320 330 340 350

このページのTOPに戻る