◆◆◆RE_1186 detail◆◆◆

Code name	RE_1186
Locus	AT5G65790
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.70%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_1186_1122bp ATGGGAAGAGCACCGTGTTGTGATAAGGCCAACGTGAAGAAAGGGCCTTGGTCTCCTGAGGAAGACGCCAAACTCAAAGATTACATCGAGAATAGTGGCA CAGGAGGCAACTGGATTGCTTTGCCTCAGAAAATTGGTTTAAGGAGATGTGGGAAGAGTTGCAGGCTAAGGTGGCTCAACTATTTGAGACCAAACATCAA ACATGGTGGCTTCTCCGAGGAAGAAGACAACATCATTTGTAACCTCTATGTTACTATTGGTAGCAGGTGGTCTATAATTGCTGCACAATTGCCGGGAAGA ACCGACAACGATATCAAAAACTATTGGAACACGAGGCTGAAGAAGAAGCTTCTGAACAAACAAAGGAAAGAGTTCCAAGAAGCGCGAATGAAGCAAGAGA TGGTGATGATGAAAAGGCAACAACAAGGACAAGGACAAGGTCAAAGTAATGGTAGTACGGATCTTTATCTTAACAACATGTTTGGATCATCACCATGGCC ATTACTACCACAACTTCCTCCTCCACATCATCAAATACCTCTTGGAATGATGGAACCAACAAGCTGTAACTACTACCAAACGACACCGTCTTGTAACCTA GAACAAAAGCCATTGATCACACTCAAGAACATGGTCAAGATTGAAGAAGAACAGGAAAGGACAAACCCTGATCATAATCATCAAGATTCTGTCACAAACC CTTTTGATTTCTCTTTCTCTCAGCTTTTGTTAGATCCCAATTACTATCTGGGATCAGGAGGGGGAGGAGAAGGAGATTTTGCTATCATGAGCAGCAGCAC AAACTCACCATTACCAAACACAAGTAGTGATCAACATCCAAGTCAACAGCAAGAGATTCTTCAATGGTTTGGGAGCAGTAACTTTCAGACAGAAGCAATC AACGATATGTTCATAAACAACAACAACAACATAGTGAATCTTGAGACCATCGAGAACACAAAAGTCTATGGAGACGCCTCAGTAGCCGGAGCCGCTGTCC GAGCAGCTTTGGGCGGAGGGACAACGAGTACATCGGCGGATCAAAGTACAATAAGTTGGGAGGATATAACTTCTCTAGTTAATTCCGAAGATGCAAGTTA CTTCAATGCGCCAAATCATGTG >RE_1186_translated MGRAPCCDKANVKKGPWSPEEDAKLKDYIENSGTGGNWIALPQKIGLRRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICNLYVTIGSRWSIIAAQLPGR TDNDIKNYWNTRLKKKLLNKQRKEFQEARMKQEMVMMKRQQQGQGQGQSNGSTDLYLNNMFGSSPWPLLPQLPPPHHQIPLGMMEPTSCNYYQTTPSCNL EQKPLITLKNMVKIEEEQERTNPDHNHQDSVTNPFDFSFSQLLLDPNYYLGSGGGGEGDFAIMSSSTNSPLPNTSSDQHPSQQQEILQWFGSSNFQTEAI NDMFINNNNNIVNLETIENTKVYGDASVAGAAVRAALGGGTTSTSADQSTISWEDITSLVNSEDASYFNAPNHV
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1121/1122 (99.9%)（アミノ酸配列で373/374 (99.7%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G65 ATGGGAAGAGCACCGTGTTGTGATAAGGCCAACGTGAAGAAAGGGCCTTGGTCTCCTGAGGAAGACGCCAAACTCAAAGATTACATCGAGAATAGTGGCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 ATGGGAAGAGCACCGTGTTGTGATAAGGCCAACGTGAAGAAAGGGCCTTGGTCTCCTGAGGAAGACGCCAAACTCAAAGATTACATCGAGAATAGTGGCA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G65 CAGGAGGCAACTGGATTGCTTTGCCTCAGAAAATTGGTTTAAGGAGATGTGGGAAGAGTTGCAGGCTAAGGTGGCTCAACTATTTGAGACCAAACATCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 CAGGAGGCAACTGGATTGCTTTGCCTCAGAAAATTGGTTTAAGGAGATGTGGGAAGAGTTGCAGGCTAAGGTGGCTCAACTATTTGAGACCAAACATCAA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G65 ACATGGTGGCTTCTCCGAGGAAGAAGACAACATCATTTGTAACCTCTATGTTACTATTGGTAGCAGGTGGTCTATAATTGCTGCACAATTGCCGGGAAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 ACATGGTGGCTTCTCCGAGGAAGAAGACAACATCATTTGTAACCTCTATGTTACTATTGGTAGCAGGTGGTCTATAATTGCTGCACAATTGCCGGGAAGA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G65 ACCGACAACGATATCAAAAACTATTGGAACACGAGGCTGAAGAAGAAGCTTCTGAACAAACAAAGGAAAGAGTTCCAAGAAGCGCGAATGAAGCAAGAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 ACCGACAACGATATCAAAAACTATTGGAACACGAGGCTGAAGAAGAAGCTTCTGAACAAACAAAGGAAAGAGTTCCAAGAAGCGCGAATGAAGCAAGAGA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G65 TGGTGATGATGAAAAGGCAACAACAAGGACAAGGACAAGGTCAAAGTAATGGTAGTACGGATCTTTATCTTAACAACATGTTTGGATCATCACCATGGCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 TGGTGATGATGAAAAGGCAACAACAAGGACAAGGACAAGGTCAAAGTAATGGTAGTACGGATCTTTATCTTAACAACATGTTTGGATCATCACCATGGCC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G65 ATTACTACCACAACTTCCTCCTCCACATCATCAAATACCTCTTGGAATGATGGAACCAACAAGCTGTAACTACTACCAAACGACACCGTCTTGTAACCTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 ATTACTACCACAACTTCCTCCTCCACATCATCAAATACCTCTTGGAATGATGGAACCAACAAGCTGTAACTACTACCAAACGACACCGTCTTGTAACCTA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G65 GAACAAAAGCCATTGATCACACTCAAGAACATGGTCAAGATTGAAGAAGAACAGGAAAGGACAAACCCTGATCATCATCATCAAGATTCTGTCACAAACC ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: RE_118 GAACAAAAGCCATTGATCACACTCAAGAACATGGTCAAGATTGAAGAAGAACAGGAAAGGACAAACCCTGATCATAATCATCAAGATTCTGTCACAAACC 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT5G65 CTTTTGATTTCTCTTTCTCTCAGCTTTTGTTAGATCCCAATTACTATCTGGGATCAGGAGGGGGAGGAGAAGGAGATTTTGCTATCATGAGCAGCAGCAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 CTTTTGATTTCTCTTTCTCTCAGCTTTTGTTAGATCCCAATTACTATCTGGGATCAGGAGGGGGAGGAGAAGGAGATTTTGCTATCATGAGCAGCAGCAC 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT5G65 AAACTCACCATTACCAAACACAAGTAGTGATCAACATCCAAGTCAACAGCAAGAGATTCTTCAATGGTTTGGGAGCAGTAACTTTCAGACAGAAGCAATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 AAACTCACCATTACCAAACACAAGTAGTGATCAACATCCAAGTCAACAGCAAGAGATTCTTCAATGGTTTGGGAGCAGTAACTTTCAGACAGAAGCAATC 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT5G65 AACGATATGTTCATAAACAACAACAACAACATAGTGAATCTTGAGACCATCGAGAACACAAAAGTCTATGGAGACGCCTCAGTAGCCGGAGCCGCTGTCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 AACGATATGTTCATAAACAACAACAACAACATAGTGAATCTTGAGACCATCGAGAACACAAAAGTCTATGGAGACGCCTCAGTAGCCGGAGCCGCTGTCC 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT5G65 GAGCAGCTTTGGGCGGAGGGACAACGAGTACATCGGCGGATCAAAGTACAATAAGTTGGGAGGATATAACTTCTCTAGTTAATTCCGAAGATGCAAGTTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 GAGCAGCTTTGGGCGGAGGGACAACGAGTACATCGGCGGATCAAAGTACAATAAGTTGGGAGGATATAACTTCTCTAGTTAATTCCGAAGATGCAAGTTA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 AT5G65 CTTCAATGCGCCAAATCATGTG :::::::::::::::::::::: RE_118 CTTCAATGCGCCAAATCATGTG 1110 1120 10 20 30 40 50 60 70 80 90 100 AT5G65 MGRAPCCDKANVKKGPWSPEEDAKLKDYIENSGTGGNWIALPQKIGLRRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICNLYVTIGSRWSIIAAQLPGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 MGRAPCCDKANVKKGPWSPEEDAKLKDYIENSGTGGNWIALPQKIGLRRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICNLYVTIGSRWSIIAAQLPGR 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G65 TDNDIKNYWNTRLKKKLLNKQRKEFQEARMKQEMVMMKRQQQGQGQGQSNGSTDLYLNNMFGSSPWPLLPQLPPPHHQIPLGMMEPTSCNYYQTTPSCNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 TDNDIKNYWNTRLKKKLLNKQRKEFQEARMKQEMVMMKRQQQGQGQGQSNGSTDLYLNNMFGSSPWPLLPQLPPPHHQIPLGMMEPTSCNYYQTTPSCNL 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G65 EQKPLITLKNMVKIEEEQERTNPDHHHQDSVTNPFDFSFSQLLLDPNYYLGSGGGGEGDFAIMSSSTNSPLPNTSSDQHPSQQQEILQWFGSSNFQTEAI :::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 EQKPLITLKNMVKIEEEQERTNPDHNHQDSVTNPFDFSFSQLLLDPNYYLGSGGGGEGDFAIMSSSTNSPLPNTSSDQHPSQQQEILQWFGSSNFQTEAI 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 AT5G65 NDMFINNNNNIVNLETIENTKVYGDASVAGAAVRAALGGGTTSTSADQSTISWEDITSLVNSEDASYFNAPNHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_118 NDMFINNNNNIVNLETIENTKVYGDASVAGAAVRAALGGGTTSTSADQSTISWEDITSLVNSEDASYFNAPNHV 310 320 330 340 350 360 370

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