◆◆◆RE_1213 detail◆◆◆

Code name	RE_1213
Locus	AT2G42400
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.80%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_1213_1350bp ATGTCAAACCACCCGAAGATCACATCGGCGCATCAGAATGTGGAGGAGAAGCTAAGGGAACTTCAGGAGAGGTTCTGTCATCTTCAAGCTGCTAGGAAAG AAGGGCGGCATGGTGACCTTGCGCTTTTAGAAGCCCAAATCTCTCAGAATATTCGGGAGTGGCAAGCTGAACTCACTGCTCCTTCTCCTGAATCTTCTCT GTTGGGTGAAGGTATTAGCCAATTCCTTGAGGAGTTTGCTCCTCTGTTGAAATTAGACGAGGAGGATGATGCAACTAGTACGCTAAAAGAACATGCTGGA GCAAAGCCTGATCCTGAGGGTTTTTCTCAAAGCTTGTGCCCTCCTGAATGGACATCTGAGAATTTTAGTCAAAGTCCTTTCAACGGAAATTTCTCCTGCG GCTTTGAGGATGCTCTTAATAGCACAGAAACACATGGCCAGCAACTCCATTATGGATATGAAGGGTTTGATCCAAGCATAAACTCCGCTCCTGATTTCCA TGACCAAAAACTCAGCAGCAACTTGGATATAACTTCTCAGTATGATTATATTTTCTCCGAAGTGCGTCAGGAACTAGATAACAGCCCTTCCACTAAGCTT GATTCTTCTGAAGAGATTGACAACTTTGCTGAATTTTCTACTCCATCAAGTGTCCGTGTGCCTCCATCTGCTTTTCTGGGACCTAAGTGTGCACTATGGG ATTGCACAAGGCCTGCTCAGGGCTCCGAGTGGTACCTGGATTACTGCAGTAACTACCATGGGACTCTAGCTCTGAATGAAGATTCGCCTGGCACAGCACC TGTATTGAGGCCAGGGGGCATCAGTTTGAAAGATAATCTATTGATTGATGCTCTTCGTGCAAAGACTCAGGGTAAGAATGTTGGGATCCCAGTGTGTGAA GGAGCTGTTAACACAAAATGCCCATGGAACGCAGCAGAGCTATTTCATCTTGAACTGGTTGAAGGCGAAACAATTAGAGAGTGGCTCTTCTTTGACAAAC CTAGAAGAGCATATGATAGCGGAAACCGAAAGCAAAGATCACTTCCAGATTACAGTGGAAGAGGTTGGCATGAATCAAGAAAACAACTGATGAAGGAACA AGAAGGCCAGAAGAGATCTTACTATATGGATCCACAACCTCCAGGTCCCTTTGAGTGGCATCTCTTTGAATACCAAATCAATGAATCTGACGCATGTGCG TTATGTCGCCTAGAACTTAAAGTAGGAAATGGAAAGAAGAGTCCTAAGGGAAAGATTTCAAAAGACCCTCTGGCTGATCTGCAGAAGAAGATGGGACAGT TTAAAGTGGCTTCAGACAAACCCTCTCCTCCAACCAAAGGTCGTAAGGAG >RE_1213_translated MSNHPKITSAHQNVEEKLRELQERFCHLQAARKEGRHGDLALLEAQISQNIREWQAELTAPSPESSLLGEGISQFLEEFAPLLKLDEEDDATSTLKEHAG AKPDPEGFSQSLCPPEWTSENFSQSPFNGNFSCGFEDALNSTETHGQQLHYGYEGFDPSINSAPDFHDQKLSSNLDITSQYDYIFSEVRQELDNSPSTKL DSSEEIDNFAEFSTPSSVRVPPSAFLGPKCALWDCTRPAQGSEWYLDYCSNYHGTLALNEDSPGTAPVLRPGGISLKDNLLIDALRAKTQGKNVGIPVCE GAVNTKCPWNAAELFHLELVEGETIREWLFFDKPRRAYDSGNRKQRSLPDYSGRGWHESRKQLMKEQEGQKRSYYMDPQPPGPFEWHLFEYQINESDACA LCRLELKVGNGKKSPKGKISKDPLADLQKKMGQFKVASDKPSPPTKGRKE
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1349/1350 (99.9%)（アミノ酸配列で449/450 (99.8%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT2G42 ATGTCAAACCACCCGAAGATCACATCGGCGCATCAGAATGTGGAGGAGAAGCTAAGGGAACTTCAGGAGAGGTTCTGTCATCTTCAAGCTGCTAGGAAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_121 ATGTCAAACCACCCGAAGATCACATCGGCGCATCAGAATGTGGAGGAGAAGCTAAGGGAACTTCAGGAGAGGTTCTGTCATCTTCAAGCTGCTAGGAAAG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G42 AAGGGCGGCATGGTGACCTTGCGCTTTTAGAAGCCCAAATCTCTCAGAATATTCGGGAGTGGCAAGCTGAACTCACTGCTCCTTCTCCTGAATCTTCTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_121 AAGGGCGGCATGGTGACCTTGCGCTTTTAGAAGCCCAAATCTCTCAGAATATTCGGGAGTGGCAAGCTGAACTCACTGCTCCTTCTCCTGAATCTTCTCT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G42 GTTGGGTGAAGGTATTAGCCAATTCCTTGAGGAGTTTGCTCCTCTGTTGAAATTAGACGAGGAGGATGATGCAACTAGTACGCTAAAAGAACATGCTGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_121 GTTGGGTGAAGGTATTAGCCAATTCCTTGAGGAGTTTGCTCCTCTGTTGAAATTAGACGAGGAGGATGATGCAACTAGTACGCTAAAAGAACATGCTGGA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G42 GCAAAGCCTGATCCTGAGGGTTTTTCTCAAAGCTTGTGCCCTCCTGAATGGACATCTGAGAATTTTAGTCAAAGTCCTTTCAACGGAAATTTCTCCTGCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_121 GCAAAGCCTGATCCTGAGGGTTTTTCTCAAAGCTTGTGCCCTCCTGAATGGACATCTGAGAATTTTAGTCAAAGTCCTTTCAACGGAAATTTCTCCTGCG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT2G42 GCTTTGAGGATGCTCTTAATAGCACAGAAACACATGGCCAGCAACTCCATTATGGATATGAAGGGTTTGATCCAAGCATAAACTCCGCTCCTGATTTCCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_121 GCTTTGAGGATGCTCTTAATAGCACAGAAACACATGGCCAGCAACTCCATTATGGATATGAAGGGTTTGATCCAAGCATAAACTCCGCTCCTGATTTCCA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT2G42 TGACCAAAAACTCAGCAGCAACTTGGATATAACTTCTCAGTATGATTATATTTTCTCCGAAGTGCGTCAGGAACTAGATAACAGCCCTTCCACTAAGCTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_121 TGACCAAAAACTCAGCAGCAACTTGGATATAACTTCTCAGTATGATTATATTTTCTCCGAAGTGCGTCAGGAACTAGATAACAGCCCTTCCACTAAGCTT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT2G42 GATTCTTCTGAAGAGATTGACAACTTTGCTGAATTTTCTACTCCATCAAGTGTCCGTGTGCCTCCATCTGCTTTTCTGGGACCTAAGTGTGCACTATGGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_121 GATTCTTCTGAAGAGATTGACAACTTTGCTGAATTTTCTACTCCATCAAGTGTCCGTGTGCCTCCATCTGCTTTTCTGGGACCTAAGTGTGCACTATGGG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT2G42 ATTGCACAAGGCCTGCTCAGGGCTCCGAGTGGTACCTGGATTACTGCAGTAACTACCATGGGACTCTAGCTCTGAATGAAGATTCGCCTGGCACAGCACC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_121 ATTGCACAAGGCCTGCTCAGGGCTCCGAGTGGTACCTGGATTACTGCAGTAACTACCATGGGACTCTAGCTCTGAATGAAGATTCGCCTGGCACAGCACC 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT2G42 TGTATTGAGGCCAGGGGGCATCAGTTTGAAAGATAATCTATTGATTGATGCTCTTCGTGCAAAGACTCAGGGTAAGAATGTTGGGATCCCAGTGTGTGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_121 TGTATTGAGGCCAGGGGGCATCAGTTTGAAAGATAATCTATTGATTGATGCTCTTCGTGCAAAGACTCAGGGTAAGAATGTTGGGATCCCAGTGTGTGAA 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT2G42 GGAGCTGTTAACACAAAATGCCCATGGAACGCAGCAGAGCTATTTCATCTTGAACTGGTTGAAGGCGAAACAATTAGAGAGTGGCTCTTCTTTGACAAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_121 GGAGCTGTTAACACAAAATGCCCATGGAACGCAGCAGAGCTATTTCATCTTGAACTGGTTGAAGGCGAAACAATTAGAGAGTGGCTCTTCTTTGACAAAC 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT2G42 CTAGAAGAGCATATGATAGCGGAAACCGAAAGCAAAGATCACTTCCAGATTACAGTGGAAGAGGTTGGCATGAATCAAGAAAACAACTGATGAAGGAACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_121 CTAGAAGAGCATATGATAGCGGAAACCGAAAGCAAAGATCACTTCCAGATTACAGTGGAAGAGGTTGGCATGAATCAAGAAAACAACTGATGAAGGAACA 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT2G42 AGAAGGCCAGAAGAGATCTTACTATATGGATCCACAACCTCCAGGTCCCTTTGAGTGGCATCTCTTTGAATACCAAATCAATGAATCTGACGCATGTGCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_121 AGAAGGCCAGAAGAGATCTTACTATATGGATCCACAACCTCCAGGTCCCTTTGAGTGGCATCTCTTTGAATACCAAATCAATGAATCTGACGCATGTGCG 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT2G42 TTATATCGCCTAGAACTTAAAGTAGGAAATGGAAAGAAGAGTCCTAAGGGAAAGATTTCAAAAGACCCTCTGGCTGATCTGCAGAAGAAGATGGGACAGT :::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_121 TTATGTCGCCTAGAACTTAAAGTAGGAAATGGAAAGAAGAGTCCTAAGGGAAAGATTTCAAAAGACCCTCTGGCTGATCTGCAGAAGAAGATGGGACAGT 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 AT2G42 TTAAAGTGGCTTCAGACAAACCCTCTCCTCCAACCAAAGGTCGTAAGGAG :::::::::::::::::::::::::::::::::::::::::::::::::: RE_121 TTAAAGTGGCTTCAGACAAACCCTCTCCTCCAACCAAAGGTCGTAAGGAG 1310 1320 1330 1340 1350 10 20 30 40 50 60 70 80 90 100 AT2G42 MSNHPKITSAHQNVEEKLRELQERFCHLQAARKEGRHGDLALLEAQISQNIREWQAELTAPSPESSLLGEGISQFLEEFAPLLKLDEEDDATSTLKEHAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_121 MSNHPKITSAHQNVEEKLRELQERFCHLQAARKEGRHGDLALLEAQISQNIREWQAELTAPSPESSLLGEGISQFLEEFAPLLKLDEEDDATSTLKEHAG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G42 AKPDPEGFSQSLCPPEWTSENFSQSPFNGNFSCGFEDALNSTETHGQQLHYGYEGFDPSINSAPDFHDQKLSSNLDITSQYDYIFSEVRQELDNSPSTKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_121 AKPDPEGFSQSLCPPEWTSENFSQSPFNGNFSCGFEDALNSTETHGQQLHYGYEGFDPSINSAPDFHDQKLSSNLDITSQYDYIFSEVRQELDNSPSTKL 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G42 DSSEEIDNFAEFSTPSSVRVPPSAFLGPKCALWDCTRPAQGSEWYLDYCSNYHGTLALNEDSPGTAPVLRPGGISLKDNLLIDALRAKTQGKNVGIPVCE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_121 DSSEEIDNFAEFSTPSSVRVPPSAFLGPKCALWDCTRPAQGSEWYLDYCSNYHGTLALNEDSPGTAPVLRPGGISLKDNLLIDALRAKTQGKNVGIPVCE 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G42 GAVNTKCPWNAAELFHLELVEGETIREWLFFDKPRRAYDSGNRKQRSLPDYSGRGWHESRKQLMKEQEGQKRSYYMDPQPPGPFEWHLFEYQINESDACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_121 GAVNTKCPWNAAELFHLELVEGETIREWLFFDKPRRAYDSGNRKQRSLPDYSGRGWHESRKQLMKEQEGQKRSYYMDPQPPGPFEWHLFEYQINESDACA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 AT2G42 LYRLELKVGNGKKSPKGKISKDPLADLQKKMGQFKVASDKPSPPTKGRKE : :::::::::::::::::::::::::::::::::::::::::::::::: RE_121 LCRLELKVGNGKKSPKGKISKDPLADLQKKMGQFKVASDKPSPPTKGRKE 410 420 430 440 450

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