◆◆◆RE_1278 detail◆◆◆

Code name	RE_1278
Locus	AT1G53320
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.70%一致
comment	(manual:1278_1F/0708_20080115_1278F/W2/W1)
sequence	>RE_1278_1137bp ATGCCTTTGTCACGGTCCCTCCTTTCGCGGAGGATCTCGAACTCTTTTAGGTTTCATCAGGGAGAGACAACGACGGCACCGGAATCCGAATCGATTCCTC CGCCGTCGAATATGGCCGGTTCTTCGTCATGGTCGGCGATGCTCCCTGAATTATTAGGCGAGATCATTCGTCGCGTGGAGGAGACTGAGGACCGTTGGCC TCAACGTCGTGATGTAGTTACTTGCGCTTGCGTTTCTAAGAAATGGAGAGAAATCACTCACGATTTCGCTAGATCCTCTCTTAACTCTGGCAAAATTACT TTCCCTTCTTGCCTCAAATTGCCAGGTCCTAGAGACTTTTCTAATCAGTGCTTGATAAAGAGGAACAAGAAGACATCAACGTTTTACTTGTATCTTGCTC TAACACCATCATTCACTGATAAGGGAAAGTTTCTTCTGGCGGCGCGGAGGTTTAGGACCGGTGCTTACACTGAGTACATCATATCACTTGATGCTGATGA TTTCTCTCAAGGAAGTAATGCCTACGTCGGAAAATTAAGATCAGATTTTCTTGGGACCAACTTTACAGTATACGATAGCCAACCACCACACAACGGAGCA AAACCTTCAAATGGCAAAGCCAGTCGCAGATTTGCATCAAAGCAGATAAGCCCTCAAGTTCCAGCAGGCAACTTTGAAGTCGGTCATGTTTCTTATAAAT TCAACCTTTTGAAATCAAGAGGTCCAAGAAGAATGGTAAGCACACTCCGATGCCCATCACCATCACCTTCATCATCATCCGCTGGACTCTCGTCTGACCA AAAGCCATGTGATGTAACCAAGATAATGAAAAAACCCAACAAGGATGGTTCCAGCTTGACAATACTAAAGAACAAAGCTCCTAGATGGCACGAGCACTTG CAGTGCTGGTGTCTGAACTTCCATGGACGAGTTACTGTTGCTTCGGTCAAGAACTTTCGGCTGGTTGCGACCGTTGACCAAAGTCAACCGAGCGGTAAAG GCGATGAAGAAACAGTTCTTCTACAGTTTGGTAAAGTGGGAGATGACACTTTCACTATGGATTATAGACAGCCTCTCTCTGCATTTCAGGCTTTTGCTAT CTGTCTCACAAGTTTCGGCACTAAACTTGCCTGCGAG >RE_1278_translated MPLSRSLLSRRISNSFRFHQGETTTAPESESIPPPSNMAGSSSWSAMLPELLGEIIRRVEETEDRWPQRRDVVTCACVSKKWREITHDFARSSLNSGKIT FPSCLKLPGPRDFSNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRFRTGAYTEYIISLDADDFSQGSNAYVGKLRSDFLGTNFTVYDSQPPHNGA KPSNGKASRRFASKQISPQVPAGNFEVGHVSYKFNLLKSRGPRRMVSTLRCPSPSPSSSSAGLSSDQKPCDVTKIMKKPNKDGSSLTILKNKAPRWHEHL QCWCLNFHGRVTVASVKNFRLVATVDQSQPSGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1136/1137 (99.9%)（アミノ酸配列で378/379 (99.7%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT1G53 ATGCCTTTGTCACGGTCCCTCCTTTCGCGGAGGATCTCGAACTCTTTTAGGTTTCATCAGGGAGAGACAACGACGGCACCGGAATCCGAATCGATTCCTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_127 ATGCCTTTGTCACGGTCCCTCCTTTCGCGGAGGATCTCGAACTCTTTTAGGTTTCATCAGGGAGAGACAACGACGGCACCGGAATCCGAATCGATTCCTC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G53 CGCCGTCGAATATGGCCGGTTCTTCGTCATGGTCGGCGATGCTCCCTGAATTATTAGGCGAGATCATTCGTCGCGTGGAGGAGACTGAGGACCGTTGGCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_127 CGCCGTCGAATATGGCCGGTTCTTCGTCATGGTCGGCGATGCTCCCTGAATTATTAGGCGAGATCATTCGTCGCGTGGAGGAGACTGAGGACCGTTGGCC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G53 TCAACGTCGTGATGTAGTTACTTGCGCTTGCGTTTCTAAGAAATGGAGAGAAATCACTCACGATTTCGCTAGATCCTCTCTTAACTCTGGCAAAATTACT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_127 TCAACGTCGTGATGTAGTTACTTGCGCTTGCGTTTCTAAGAAATGGAGAGAAATCACTCACGATTTCGCTAGATCCTCTCTTAACTCTGGCAAAATTACT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT1G53 TTCCCTTCTTGCCTCAAATTGCCAGGTCCTAGAGACTTTTCTAATCAGTGCTTGATAAAGAGGAACAAGAAGACATCAACGTTTTACTTGTATCTTGCTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_127 TTCCCTTCTTGCCTCAAATTGCCAGGTCCTAGAGACTTTTCTAATCAGTGCTTGATAAAGAGGAACAAGAAGACATCAACGTTTTACTTGTATCTTGCTC 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT1G53 TAACACCATCATTCACTGATAAGGGAAAGTTTCTTCTGGCGGCGCGGAGGTTTAGGACCGGTGCTTACACTGAGTACATCATATCACTTGATGCTGATGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_127 TAACACCATCATTCACTGATAAGGGAAAGTTTCTTCTGGCGGCGCGGAGGTTTAGGACCGGTGCTTACACTGAGTACATCATATCACTTGATGCTGATGA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT1G53 TTTCTCTCAAGGAAGTAATGCCTACGTCGGAAAATTAAGATCAGATTTTCTTGGGACCAACTTTACAGTATACGATAGCCAACCACCACACAACGGAGCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_127 TTTCTCTCAAGGAAGTAATGCCTACGTCGGAAAATTAAGATCAGATTTTCTTGGGACCAACTTTACAGTATACGATAGCCAACCACCACACAACGGAGCA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT1G53 AAACCTTCAAATGGCAAAGCCAGTCGCAGATTTGCATCAAAGCAGATAAGCCCTCAAGTTCCAGCAGGCAACTTTGAAGTCGGTCATGTTTCTTATAAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_127 AAACCTTCAAATGGCAAAGCCAGTCGCAGATTTGCATCAAAGCAGATAAGCCCTCAAGTTCCAGCAGGCAACTTTGAAGTCGGTCATGTTTCTTATAAAT 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT1G53 TCAACCTTTTGAAATCAAGAGGTCCAAGAAGAATGGTAAGCACACTCCGATGCCCATCACCATCACCTTCATCATCATCCGCTGGACTCTCGTCTGACCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_127 TCAACCTTTTGAAATCAAGAGGTCCAAGAAGAATGGTAAGCACACTCCGATGCCCATCACCATCACCTTCATCATCATCCGCTGGACTCTCGTCTGACCA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT1G53 AAAGCCATGTGATGTAACCAAGATAATGAAAAAACCCAACAAGGATGGTTCCAGCTTGACAATACTAAAGAACAAAGCTCCTAGATGGCACGAGCACTTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_127 AAAGCCATGTGATGTAACCAAGATAATGAAAAAACCCAACAAGGATGGTTCCAGCTTGACAATACTAAAGAACAAAGCTCCTAGATGGCACGAGCACTTG 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT1G53 CAGTGCTGGTGTCTGAACTTCCATGGACGAGTTACTGTTGCTTCGGTCAAGAACTTTCAGCTGGTTGCGACCGTTGACCAAAGTCAACCGAGCGGTAAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::: RE_127 CAGTGCTGGTGTCTGAACTTCCATGGACGAGTTACTGTTGCTTCGGTCAAGAACTTTCGGCTGGTTGCGACCGTTGACCAAAGTCAACCGAGCGGTAAAG 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT1G53 GCGATGAAGAAACAGTTCTTCTACAGTTTGGTAAAGTGGGAGATGACACTTTCACTATGGATTATAGACAGCCTCTCTCTGCATTTCAGGCTTTTGCTAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_127 GCGATGAAGAAACAGTTCTTCTACAGTTTGGTAAAGTGGGAGATGACACTTTCACTATGGATTATAGACAGCCTCTCTCTGCATTTCAGGCTTTTGCTAT 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 AT1G53 CTGTCTCACAAGTTTCGGCACTAAACTTGCCTGCGAG ::::::::::::::::::::::::::::::::::::: RE_127 CTGTCTCACAAGTTTCGGCACTAAACTTGCCTGCGAG 1110 1120 1130 10 20 30 40 50 60 70 80 90 100 AT1G53 MPLSRSLLSRRISNSFRFHQGETTTAPESESIPPPSNMAGSSSWSAMLPELLGEIIRRVEETEDRWPQRRDVVTCACVSKKWREITHDFARSSLNSGKIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_127 MPLSRSLLSRRISNSFRFHQGETTTAPESESIPPPSNMAGSSSWSAMLPELLGEIIRRVEETEDRWPQRRDVVTCACVSKKWREITHDFARSSLNSGKIT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G53 FPSCLKLPGPRDFSNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRFRTGAYTEYIISLDADDFSQGSNAYVGKLRSDFLGTNFTVYDSQPPHNGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_127 FPSCLKLPGPRDFSNQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRFRTGAYTEYIISLDADDFSQGSNAYVGKLRSDFLGTNFTVYDSQPPHNGA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G53 KPSNGKASRRFASKQISPQVPAGNFEVGHVSYKFNLLKSRGPRRMVSTLRCPSPSPSSSSAGLSSDQKPCDVTKIMKKPNKDGSSLTILKNKAPRWHEHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_127 KPSNGKASRRFASKQISPQVPAGNFEVGHVSYKFNLLKSRGPRRMVSTLRCPSPSPSSSSAGLSSDQKPCDVTKIMKKPNKDGSSLTILKNKAPRWHEHL 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 AT1G53 QCWCLNFHGRVTVASVKNFQLVATVDQSQPSGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE :::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_127 QCWCLNFHGRVTVASVKNFRLVATVDQSQPSGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 310 320 330 340 350 360 370

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