| Code name | RE_1280 | |||
|---|---|---|---|---|
| Locus | AT3G57390 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列98.80%一致 | |||
| comment | 0115_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_1280_765bp ATGGGGAGAGGAAGGATTGAGATTAAGAAGATTGAGAATATCAACAGTCGTCAAGTCACTTTCTCTAAGAGACGAAACGGTTTGATCAAGAAGGCTAAAG AGCTTTCGATTCTCTGTGACGCCGAGGTTGCTCTTATCATCTTCTCCAGCACCGGCAAGATTTACGATTTCTCCAGCGTCTGTATGGAGCAAATTCTTTC TAGATATGGATACACTACTGCGTCCACTGAGCATAAACAACAAAGAGAACACCAACTTCTAATTTGTGCTTCACATGGAAATGAAGCTGTGTTGCGAAAT GATGATTCTATGAAGGGGGAACTTGAAAGATTACAGCTTGCAATTGAGAGACTTAAGGGTAAGGAGCTTGAAGGTATGAGTTTCCCGGATCTTATTTCTC TTGAAAACCAGTTGAACGAGAGCTTGCATAGTGTCAAGGATCAAAAGACACAAATCCTGCTCAACCAGATTGAGAGATCCAGGATACAGGAGAAAAAAGC ATTGGAAGAAAACCAAATCTTGCGCAAACAGGTTGAGATGTTGGGGAGAGGTTCAGGACCAAAAGTGTTGAATGAAAGGCCTCAAGATTCTAGCCCAGAA GCCGATCCCGAGAGCTCTTCATCAGAAGAGGATGAGAATGACAACGAGGAGCACCATTCCGACACTTCCTTGCAGTTGGGGTTGTCGTCGACGGGGTATT GCACAAAGAGAAAGAAGCCGAAGATCGAACTGGTCTGCGATAACTGGGAGTCAGTGGCTTCTGAT >RE_1280_translated MGRGRIEIKKIENINSRQVTFSKRRNGLIKKAKELSILCDAEVALIIFSSTGKIYDFSSVCMEQILSRYGYTTASTEHKQQREHQLLICASHGNEAVLRN DDSMKGELERLQLAIERLKGKELEGMSFPDLISLENQLNESLHSVKDQKTQILLNQIERSRIQEKKALEENQILRKQVEMLGRGSGPKVLNERPQDSSPE ADPESSSSEEDENDNEEHHSDTSLQLGLSSTGYCTKRKKPKIELVCDNWESVASD |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 765/768 (99.6%)（アミノ酸配列で253/256 (98.8%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT3G57 ATGGGGAGAGGAAGGATTGAGATTAAGAAGATTGAGAATATCAACAGTCGTCAAGTCACTTTCTCTAAGAGACGAAACGGTTTGATCAAGAAGGCTAAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_128 ATGGGGAGAGGAAGGATTGAGATTAAGAAGATTGAGAATATCAACAGTCGTCAAGTCACTTTCTCTAAGAGACGAAACGGTTTGATCAAGAAGGCTAAAG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G57 AGCTTTCGATTCTCTGTGACGCCGAGGTTGCTCTTATCATCTTCTCCAGCACCGGCAAGATTTACGATTTCTCCAGCGTCTGTATGGAGCAAATTCTTTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_128 AGCTTTCGATTCTCTGTGACGCCGAGGTTGCTCTTATCATCTTCTCCAGCACCGGCAAGATTTACGATTTCTCCAGCGTCTGTATGGAGCAAATTCTTTC
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT3G57 TAGATATGGATACACTACTGCGTCCACTGAGCATAAACAACAAAGAGAACACCAACTTCTAATTTGTGCTTCACATGGAAATGAAGCTGTGTTGCGAAAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_128 TAGATATGGATACACTACTGCGTCCACTGAGCATAAACAACAAAGAGAACACCAACTTCTAATTTGTGCTTCACATGGAAATGAAGCTGTGTTGCGAAAT
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT3G57 GATGATTCTATGAAGGGGGAACTTGAAAGATTACAGCTTGCAATTGAGAGACTTAAGGGTAAGGAGCTTGAAGGTATGAGTTTCCCGGATCTTATTTCTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_128 GATGATTCTATGAAGGGGGAACTTGAAAGATTACAGCTTGCAATTGAGAGACTTAAGGGTAAGGAGCTTGAAGGTATGAGTTTCCCGGATCTTATTTCTC
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT3G57 TTGAAAACCAGTTGAACGAGAGCTTGCATAGTGTCAAGGATCAAAAGACACAAATCCTGCTCAACCAGATTGAGAGATCCAGGATACAGGAGAAAAAAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_128 TTGAAAACCAGTTGAACGAGAGCTTGCATAGTGTCAAGGATCAAAAGACACAAATCCTGCTCAACCAGATTGAGAGATCCAGGATACAGGAGAAAAAAGC
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT3G57 ATTGGAAGAAAACCAAATCTTGCGCAAACAGGTTGAGATGTTGGGGAGAGGTTCAGGACCAAAAGTGTTGAATGAAAGGCCTCAAGATTCTAGCCCAGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_128 ATTGGAAGAAAACCAAATCTTGCGCAAACAGGTTGAGATGTTGGGGAGAGGTTCAGGACCAAAAGTGTTGAATGAAAGGCCTCAAGATTCTAGCCCAGAA
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT3G57 GCCGATCCCGAGAGCTCTTCATCAGAAGAGGATGAGAATGACAACGAGGAGCACCATTCCGACACTTCCTTGCAGTTGGGGTTGTCGTCGACGGGGTATT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_128 GCCGATCCCGAGAGCTCTTCATCAGAAGAGGATGAGAATGACAACGAGGAGCACCATTCCGACACTTCCTTGCAGTTGGGGTTGTCGTCGACGGGGTATT
610 620 630 640 650 660 670 680 690 700
710 720 730 740 750 760
AT3G57 GCACAAAGAGAAAGAAGCCGAAGATCGAACTGGTCTGCGATAACTCTGGGAGTCAAGTGGCTTCTGAT
::::::::::::::::::::::::::::::::::::::::::: ::::::::: :::::::::::::
RE_128 GCACAAAGAGAAAGAAGCCGAAGATCGAACTGGTCTGCGATAA--CTGGGAGTC-AGTGGCTTCTGAT
710 720 730 740 750 760
10 20 30 40 50 60 70 80 90 100
AT3G57 MGRGRIEIKKIENINSRQVTFSKRRNGLIKKAKELSILCDAEVALIIFSSTGKIYDFSSVCMEQILSRYGYTTASTEHKQQREHQLLICASHGNEAVLRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_128 MGRGRIEIKKIENINSRQVTFSKRRNGLIKKAKELSILCDAEVALIIFSSTGKIYDFSSVCMEQILSRYGYTTASTEHKQQREHQLLICASHGNEAVLRN
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G57 DDSMKGELERLQLAIERLKGKELEGMSFPDLISLENQLNESLHSVKDQKTQILLNQIERSRIQEKKALEENQILRKQVEMLGRGSGPKVLNERPQDSSPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_128 DDSMKGELERLQLAIERLKGKELEGMSFPDLISLENQLNESLHSVKDQKTQILLNQIERSRIQEKKALEENQILRKQVEMLGRGSGPKVLNERPQDSSPE
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250
AT3G57 ADPESSSSEEDENDNEEHHSDTSLQLGLSSTGYCTKRKKPKIELVCDNSGSQVASD
:::::::::::::::::::::::::::::::::::::::::::::::: : ::::
RE_128 ADPESSSSEEDENDNEEHHSDTSLQLGLSSTGYCTKRKKPKIELVCDNWES-VASD
210 220 230 240 250
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