| Code name | RE_1287 | |||
|---|---|---|---|---|
| Locus | AT4G18960 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | 0115_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_1287_759bp ATGACCGCGTACCAATCGGAGCTAGGAGGAGATTCCTCCCCCTTGAGGAAATCTGGGAGAGGAAAGATCGAAATCAAACGGATCGAGAACACAACGAATC GTCAAGTCACTTTTTGCAAACGTAGAAATGGTTTGCTCAAGAAAGCTTACGAGCTCTCTGTTCTTTGTGATGCTGAAGTCGCACTCATCGTCTTCTCTAG CCGTGGTCGTCTCTATGAGTACTCTAACAACAGTGTAAAAGGGACTATTGAGAGGTACAAGAAGGCAATATCGGACAATTCTAACACCGGATCGGTGGCA GAAATTAATGCACAGTATTATCAACAAGAATCAGCCAAATTGCGTCAACAAATAATCAGCATACAAAACTCCAACAGGCAATTGATGGGTGAGACGATAG GGTCAATGTCTCCCAAAGAGCTCAGGAACTTGGAAGGCAGATTAGAGAGAAGTATTACCCGAATCCGATCCAAGAAGAATGAGCTCTTATTTTCTGAAAT CGACTACATGCAGAAAAGAGAAGTTGATTTGCATAACGATAACCAGATTCTTCGTGCAAAGATAGCTGAAAATGAGAGGAACAATCCGAGTATAAGTCTA ATGCCAGGAGGATCTAACTACGAGCAGCTTATGCCACCACCTCAAACGCAATCTCAACCGTTTGATTCACGGAATTATTTCCAAGTCGCGGCATTGCAAC CTAACAATCACCATTACTCATCCGCGGGTCGCCAAGACCAAACCGCTCTCCAGTTAGTG >RE_1287_translated MTAYQSELGGDSSPLRKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVA EINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDNQILRAKIAENERNNPSISL MPGGSNYEQLMPPPQTQSQPFDSRNYFQVAALQPNNHHYSSAGRQDQTALQLV |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 754/759 (99.3%)（アミノ酸配列で252/253 (99.6%)）一致しました。
10 20 30 40 50 60 70 80 90
AT4G18 ---ACGGCGTACCAATCGGAGCTAGGAGGAGATTCCTCTCCCTTGAGGAAATCTGGGAGAGGAAAGATCGAAATCAAACGGATCGAGAACACAACGAATC
:: :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_128 ATGACCGCGTACCAATCGGAGCTAGGAGGAGATTCCTCCCCCTTGAGGAAATCTGGGAGAGGAAAGATCGAAATCAAACGGATCGAGAACACAACGAATC
10 20 30 40 50 60 70 80 90 100
100 110 120 130 140 150 160 170 180 190
AT4G18 GTCAAGTCACTTTTTGCAAACGTAGAAATGGTTTGCTCAAGAAAGCTTACGAGCTCTCTGTTCTTTGTGATGCTGAAGTCGCACTCATCGTCTTCTCTAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_128 GTCAAGTCACTTTTTGCAAACGTAGAAATGGTTTGCTCAAGAAAGCTTACGAGCTCTCTGTTCTTTGTGATGCTGAAGTCGCACTCATCGTCTTCTCTAG
110 120 130 140 150 160 170 180 190 200
200 210 220 230 240 250 260 270 280 290
AT4G18 CCGTGGTCGTCTCTATGAGTACTCTAACAACAGTGTAAAAGGGACTATTGAGAGGTACAAGAAGGCAATATCGGACAATTCTAACACCGGATCGGTGGCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_128 CCGTGGTCGTCTCTATGAGTACTCTAACAACAGTGTAAAAGGGACTATTGAGAGGTACAAGAAGGCAATATCGGACAATTCTAACACCGGATCGGTGGCA
210 220 230 240 250 260 270 280 290 300
300 310 320 330 340 350 360 370 380 390
AT4G18 GAAATTAATGCACAGTATTATCAACAAGAATCAGCCAAATTGCGTCAACAAATAATCAGCATACAAAACTCCAACAGGCAATTGATGGGTGAGACGATAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_128 GAAATTAATGCACAGTATTATCAACAAGAATCAGCCAAATTGCGTCAACAAATAATCAGCATACAAAACTCCAACAGGCAATTGATGGGTGAGACGATAG
310 320 330 340 350 360 370 380 390 400
400 410 420 430 440 450 460 470 480 490
AT4G18 GGTCAATGTCTCCCAAAGAGCTCAGGAACTTGGAAGGCAGATTAGAGAGAAGTATTACCCGAATCCGATCCAAGAAGAATGAGCTCTTATTTTCTGAAAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_128 GGTCAATGTCTCCCAAAGAGCTCAGGAACTTGGAAGGCAGATTAGAGAGAAGTATTACCCGAATCCGATCCAAGAAGAATGAGCTCTTATTTTCTGAAAT
410 420 430 440 450 460 470 480 490 500
500 510 520 530 540 550 560 570 580 590
AT4G18 CGACTACATGCAGAAAAGAGAAGTTGATTTGCATAACGATAACCAGATTCTTCGTGCAAAGATAGCTGAAAATGAGAGGAACAATCCGAGTATAAGTCTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_128 CGACTACATGCAGAAAAGAGAAGTTGATTTGCATAACGATAACCAGATTCTTCGTGCAAAGATAGCTGAAAATGAGAGGAACAATCCGAGTATAAGTCTA
510 520 530 540 550 560 570 580 590 600
600 610 620 630 640 650 660 670 680 690
AT4G18 ATGCCAGGAGGATCTAACTACGAGCAGCTTATGCCACCACCTCAAACGCAATCTCAACCGTTTGATTCACGGAATTATTTCCAAGTCGCGGCATTGCAAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_128 ATGCCAGGAGGATCTAACTACGAGCAGCTTATGCCACCACCTCAAACGCAATCTCAACCGTTTGATTCACGGAATTATTTCCAAGTCGCGGCATTGCAAC
610 620 630 640 650 660 670 680 690 700
700 710 720 730 740 750
AT4G18 CTAACAATCACCATTACTCATCCGCGGGTCGCCAAGACCAAACCGCTCTCCAGTTAGTG
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_128 CTAACAATCACCATTACTCATCCGCGGGTCGCCAAGACCAAACCGCTCTCCAGTTAGTG
710 720 730 740 750
10 20 30 40 50 60 70 80 90
AT4G18 -TAYQSELGGDSSPLRKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_128 MTAYQSELGGDSSPLRKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVA
10 20 30 40 50 60 70 80 90 100
100 110 120 130 140 150 160 170 180 190
AT4G18 EINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDNQILRAKIAENERNNPSISL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_128 EINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDNQILRAKIAENERNNPSISL
110 120 130 140 150 160 170 180 190 200
200 210 220 230 240 250
AT4G18 MPGGSNYEQLMPPPQTQSQPFDSRNYFQVAALQPNNHHYSSAGRQDQTALQLV
:::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_128 MPGGSNYEQLMPPPQTQSQPFDSRNYFQVAALQPNNHHYSSAGRQDQTALQLV
210 220 230 240 250
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