◆◆◆RE_1351 detail◆◆◆

Code name	RE_1351
Locus	AT1G63910
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.50%一致
comment	0520_20080115_1351_FRW1_255
sequence	>RE_1351_1110bp ATGGGTCATCACTCATGCTGCAACCAGCAGAAGGTGAAGAGAGGGCTTTGGTCACCGGAAGAAGATGAGAAGCTTATTAGATATATCACAACTCATGGCT ATGGATGTTGGAGTGAAGTCCCTGAAAAAGCAGGGCTTCAAAGATGTGGAAAAAGTTGTAGATTGCGATGGATAAACTATCTTCGACCTGATATCAGGAG AGGAAGGTTCTCTCCAGAAGAAGAGAAATTGATCATAAGCCTTCATGGAGTTGTGGGAAACAGGTGGGCTCATATAGCTAGTCATTTACCGGGAAGAACA GATAACGAGATTAAAAACTATTGGAATTCATGGATTAAGAAAAAGATACGAAAACCGCACCATCATTACAGTCGTCATCAACCGTCAGTAACTACTGTGA CATTGAATGCGGACACTACATCGATTGCCACTACCATCGAGGCCTCTACCACCACAACATCGACTATCGATAACTTACATTTTGACGGTTTCACTGATTC TCCTAACCAATTAAATTTCACCAATGATCAAGAAACTAATATAAAGATTCAAGAAACTTTTTTCTCCCATAAACCTCCTCTCTTCATGGTAGACACAACA CTTCCTATCCTAGAAGGAATGTTCTCTGAAAACATCATCACAAACAATAACAAGAACAATGATCATGATGACACGCAAAGAGGAGGAAGAGAAAATGTTT GTGAACAAGCATTTCTAACAACTAACACGGAAGAATGGGATATGAATCTTCGTCAGCGAGAGCCGTTTCAAGTTCCTACACGGGCGTCACATGTGTTCAA CAACTCTTCCAATTCAAATATTGACACGGTTATAAGTTATAATCTACCGGCGCTAATAGAGGGAAATGTCGATAACATCGTCCATAATGAAAACAGCAAT GTCCAAGATGGAGAAATGGCGTCCACATTCGAATGTTTAAAGAGGCAAGAACTAAGCTATGATCAATGGGACGATTCACAACAATGCTCTAACTTTTTCT TTTGGGACAACCTTAATATAAACGTGGAAGGTTCATCTCTTGTTGGAAACCAAGACCCATCAATGAATTTGGGATCATCTGCCTTATCTTCTTCTTTCCC TTCTTCGTTT >RE_1351_translated MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFSPEEEKLIISLHGVVGNRWAHIASHLPGRT DNEIKNYWNSWIKKKIRKPHHHYSRHQPSVTTVTLNADTTSIATTIEASTTTTSTIDNLHFDGFTDSPNQLNFTNDQETNIKIQETFFSHKPPLFMVDTT LPILEGMFSENIITNNNKNNDHDDTQRGGRENVCEQAFLTTNTEEWDMNLRQREPFQVPTRASHVFNNSSNSNIDTVISYNLPALIEGNVDNIVHNENSN VQDGEMASTFECLKRQELSYDQWDDSQQCSNFFFWDNLNINVEGSSLVGNQDPSMNLGSSALSSSFPSSF
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1107/1110 (99.7%)（アミノ酸配列で368/370 (99.5%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT1G63 ATGGGTCATCACTCATGCTGCAACCAGCAAAAGGTGAAGAGAGGGCTTTGGTCACCGGAAGAAGATGAGAAGCTTATTAGATATATCACAACTCATGGCT ::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_135 ATGGGTCATCACTCATGCTGCAACCAGCAGAAGGTGAAGAGAGGGCTTTGGTCACCGGAAGAAGATGAGAAGCTTATTAGATATATCACAACTCATGGCT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G63 ATGGATGTTGGAGTGAAGTCCCTGAAAAAGCAGGGCTTCAAAGATGTGGAAAAAGTTGTAGATTGCGATGGATAAACTATCTTCGACCTGATATCAGGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_135 ATGGATGTTGGAGTGAAGTCCCTGAAAAAGCAGGGCTTCAAAGATGTGGAAAAAGTTGTAGATTGCGATGGATAAACTATCTTCGACCTGATATCAGGAG 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G63 AGGAAGGTTCTCTCCAGAAGAAGAGAAATTGATCATAAGCCTTCATGGAGTTGTGGGAAACAGGTGGGCTCATATAGCTAGTCATTTACCGGGAAGAACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_135 AGGAAGGTTCTCTCCAGAAGAAGAGAAATTGATCATAAGCCTTCATGGAGTTGTGGGAAACAGGTGGGCTCATATAGCTAGTCATTTACCGGGAAGAACA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT1G63 GATAACGAGATTAAAAACTATTGGAATTCATGGATTAAGAAAAAGATACGAAAACCGCACCATCATTACAGTCGTCATCAACCGTCAGTAACTACTGTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_135 GATAACGAGATTAAAAACTATTGGAATTCATGGATTAAGAAAAAGATACGAAAACCGCACCATCATTACAGTCGTCATCAACCGTCAGTAACTACTGTGA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT1G63 CATTGAATGCGGACACTACATCGATTGCCACTACCATCGAGGCCTCTACCACCACAACATCGACTATCGATAACTTACATTTTGACGGTTTCACTGATTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_135 CATTGAATGCGGACACTACATCGATTGCCACTACCATCGAGGCCTCTACCACCACAACATCGACTATCGATAACTTACATTTTGACGGTTTCACTGATTC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT1G63 TCCTAACCAATTAAATTTCACCAATGATCAAGAAACTAATATAAAGATTCAAGAAACTTTTTTCTCCCATAAACCTCCTCTCTTCATGGTAGACACAACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_135 TCCTAACCAATTAAATTTCACCAATGATCAAGAAACTAATATAAAGATTCAAGAAACTTTTTTCTCCCATAAACCTCCTCTCTTCATGGTAGACACAACA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT1G63 CTTCCTATCCTAGAAGGAATGTTCTCTGAAAACATCATCACAAACAATAACAAGAACAATGATCATGATGACACGCAAAGAGGAGGAAGAGAAAATGTTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_135 CTTCCTATCCTAGAAGGAATGTTCTCTGAAAACATCATCACAAACAATAACAAGAACAATGATCATGATGACACGCAAAGAGGAGGAAGAGAAAATGTTT 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT1G63 GTGAACAAGCATTTCTAACAACTAACACGGAAGAATGGGATATGAATCTTCGTCAGCAAGAGCCGTTTCAAGTTCCTACACTGGCGTCACATGTGTTCAA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: :::::::::::::::::: RE_135 GTGAACAAGCATTTCTAACAACTAACACGGAAGAATGGGATATGAATCTTCGTCAGCGAGAGCCGTTTCAAGTTCCTACACGGGCGTCACATGTGTTCAA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT1G63 CAACTCTTCCAATTCAAATATTGACACGGTTATAAGTTATAATCTACCGGCGCTAATAGAGGGAAATGTCGATAACATCGTCCATAATGAAAACAGCAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_135 CAACTCTTCCAATTCAAATATTGACACGGTTATAAGTTATAATCTACCGGCGCTAATAGAGGGAAATGTCGATAACATCGTCCATAATGAAAACAGCAAT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT1G63 GTCCAAGATGGAGAAATGGCGTCCACATTCGAATGTTTAAAGAGGCAAGAACTAAGCTATGATCAATGGGACGATTCACAACAATGCTCTAACTTTTTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_135 GTCCAAGATGGAGAAATGGCGTCCACATTCGAATGTTTAAAGAGGCAAGAACTAAGCTATGATCAATGGGACGATTCACAACAATGCTCTAACTTTTTCT 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT1G63 TTTGGGACAACCTTAATATAAACGTGGAAGGTTCATCTCTTGTTGGAAACCAAGACCCATCAATGAATTTGGGATCATCTGCCTTATCTTCTTCTTTCCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_135 TTTGGGACAACCTTAATATAAACGTGGAAGGTTCATCTCTTGTTGGAAACCAAGACCCATCAATGAATTTGGGATCATCTGCCTTATCTTCTTCTTTCCC 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 AT1G63 TTCTTCGTTT :::::::::: RE_135 TTCTTCGTTT 1110 10 20 30 40 50 60 70 80 90 100 AT1G63 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFSPEEEKLIISLHGVVGNRWAHIASHLPGRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_135 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFSPEEEKLIISLHGVVGNRWAHIASHLPGRT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT1G63 DNEIKNYWNSWIKKKIRKPHHHYSRHQPSVTTVTLNADTTSIATTIEASTTTTSTIDNLHFDGFTDSPNQLNFTNDQETNIKIQETFFSHKPPLFMVDTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_135 DNEIKNYWNSWIKKKIRKPHHHYSRHQPSVTTVTLNADTTSIATTIEASTTTTSTIDNLHFDGFTDSPNQLNFTNDQETNIKIQETFFSHKPPLFMVDTT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT1G63 LPILEGMFSENIITNNNKNNDHDDTQRGGRENVCEQAFLTTNTEEWDMNLRQQEPFQVPTLASHVFNNSSNSNIDTVISYNLPALIEGNVDNIVHNENSN ::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::: ::::::::::::::::::::::::::::::::::::::: RE_135 LPILEGMFSENIITNNNKNNDHDDTQRGGRENVCEQAFLTTNTEEWDMNLRQREPFQVPTRASHVFNNSSNSNIDTVISYNLPALIEGNVDNIVHNENSN 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 AT1G63 VQDGEMASTFECLKRQELSYDQWDDSQQCSNFFFWDNLNINVEGSSLVGNQDPSMNLGSSALSSSFPSSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_135 VQDGEMASTFECLKRQELSYDQWDDSQQCSNFFFWDNLNINVEGSSLVGNQDPSMNLGSSALSSSFPSSF 310 320 330 340 350 360 370

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