◆◆◆RE_1379 detail◆◆◆

Code name	RE_1379
Locus	AT2G46830
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列88.30%一致
comment	0318_アミノ酸配列70%以上一致
sequence	>RE_1379_1614bp ATGGTAGAGAAAGAGGCTGAAGCTAAAGGTGTAGCTATGGGTCAAGCGCTAGACATAGCTATTCCTCCTCCACGGCCTAAGCGTAAACCAAACAATCCTT ATCCTCGAAAGACGGGAAGTGGAACGATCCTTATGTCAAAAACGGGTGTGAATGATGGAAAAGAGTCCCTTGGATCAGAAAAAGTGTCGCATCCTGAGAT GGCCAATGAAGATCGACAACAATCAAAGCCTGAAGAGAAAACTCTGCAGGAAGACAACTGTTCAGATTGTTTCACTCATCAGTATCTCTCTGCTGCATCC TCCATGAATAAAAGTTGTATAGAGACATCAAACGCAAGCACTTTCCGCGAGTTCTTGCCTTCACGGGAAGAGGGAAGTCAGAATAACAGGGTAAGAAAGG AGTCAAACTCAGATTTGAATGCAAAATCTCTGGAAAACGGTAATGAGCAAGGACCTCAGACTTATCCGATGCATATCCCTGTGCTAGTGCCATTGGGGAG CTCAATAACAAGTTCTCTATCACATCCTCCTTCAGAGCCAGATAGTCATCCCCACACAGTTGCAGGAGATTATCAGTCGTTTCCTAATCATATAATGTCA ACCCTTTTACAAACACCGGCTCTTTATACTGCCGCAACTTTCGCCTCATCATTTTGGCCTCCCGATTCTAGTGGTGGCTCACCTGTTCCAGGGAACTCAC CTCCGAATCTGGCTGCCATGGCCGCAGCCACTGTTGCAGCTGCTAGTGCTTGGTGGGCTGCCAATGGATTATTACCTTTATGTGCTCCTCTTAGTTCAGG TGGTTTCACTAGTCATCCTCCATCTACTTTTGGACCATCATGTGATGTAGAGTACACAAAAGCAAGCACTTTACAACATGGTTCTGTGCAGAGCCGAGAG CAAGAACACTCCGAGGCATCAAAGGCTCGATCTTCACTGGACTCAGAGGATGTTGAAAATAAGAGTAAACCAGTTTGTCATGAGCAGCCTTCTGCAACAC CTGAGAGTGATGCAAAGGGTTCAGATGGAGCAGGAGACAGAAAACAAGTTGACCGGTCCTCGTGTGGCTCAAACACTCCGTCGAGTAGTGATGATGTTGA GGCGGATGCATCAGAAAGGCAAGAGGATGGCACCAATGGTGAGGTGAAAGAAACGAATGAAGACACTAATAAACCTCAAACTTCAGAGTCCAATGCACGC CGCAGTAGAATCAGCTCCAATATAACCGATCCATGGAAGTCTGTGTCTGACGAGGGTCGAATTGCCTTCCAAGCTCTCTTCTCCAGAGAGGTATTGCCGC AAAGTTTTACATATCGAGAAGAACACAGAGAGGAAGAACAACAACAACAAGAACAAAGATATCCAATGGCACTTGATCTTAACTTCACAGCTCAGTTAAC ACCAGTTGATGATCAAGAGGAGAAGAGAAACACAGGATTTCTTGGAATCGGATTAGATGCTTCAAAGCTAATGAGTAGAGGAAGAACAGGTTTTAAACCA TACAAAAGATGTTCCATGGAAGCCAAAGAAAGTAGAATCCTCAACAACAATCCTATCATTCATGTGGAACAGAAAGATCCCAAACGGATGCGGTTGGAAA CTCAAGCTTCCACA >RE_1379_translated MVEKEAEAKGVAMGQALDIAIPPPRPKRKPNNPYPRKTGSGTILMSKTGVNDGKESLGSEKVSHPEMANEDRQQSKPEEKTLQEDNCSDCFTHQYLSAAS SMNKSCIETSNASTFREFLPSREEGSQNNRVRKESNSDLNAKSLENGNEQGPQTYPMHIPVLVPLGSSITSSLSHPPSEPDSHPHTVAGDYQSFPNHIMS TLLQTPALYTAATFASSFWPPDSSGGSPVPGNSPPNLAAMAAATVAAASAWWAANGLLPLCAPLSSGGFTSHPPSTFGPSCDVEYTKASTLQHGSVQSRE QEHSEASKARSSLDSEDVENKSKPVCHEQPSATPESDAKGSDGAGDRKQVDRSSCGSNTPSSSDDVEADASERQEDGTNGEVKETNEDTNKPQTSESNAR RSRISSNITDPWKSVSDEGRIAFQALFSREVLPQSFTYREEHREEEQQQQEQRYPMALDLNFTAQLTPVDDQEEKRNTGFLGIGLDASKLMSRGRTGFKP YKRCSMEAKESRILNNNPIIHVEQKDPKRMRLETQAST
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1613/1824 (88.4%)（アミノ酸配列で537/608 (88.3%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT2G46 ATGGAGACAAATTCGTCTGGAGAAGATCTGGTTATTAAGACTCGGAAGCCATATACGATAACAAAGCAACGTGAAAGGTGGACTGAGGAAGAACATAATA RE_137 ---------------------------------------------------------------------------------------------------- 110 120 130 140 150 160 170 180 190 200 AT2G46 GATTCATTGAAGCTTTGAGGCTTTATGGTAGAGCATGGCAGAAGATTGAAGAACATGTAGCAACAAAAACTGCTGTCCAGATAAGAAGTCACGCTCAGAA RE_137 ---------------------------------------------------------------------------------------------------- 210 220 230 240 250 260 270 280 290 300 AT2G46 ATTTTTCTCCAAGGTAGAGAAAGAGGCTGAAGCTAAAGGTGTAGCTATGGGTCAAGCGCTAGACATAGCTATTCCTCCTCCACGGCCTAAGCGTAAACCA : :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_137 ----------ATGGTAGAGAAAGAGGCTGAAGCTAAAGGTGTAGCTATGGGTCAAGCGCTAGACATAGCTATTCCTCCTCCACGGCCTAAGCGTAAACCA 10 20 30 40 50 60 70 80 90 310 320 330 340 350 360 370 380 390 400 AT2G46 AACAATCCTTATCCTCGAAAGACGGGAAGTGGAACGATCCTTATGTCAAAAACGGGTGTGAATGATGGAAAAGAGTCCCTTGGATCAGAAAAAGTGTCGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_137 AACAATCCTTATCCTCGAAAGACGGGAAGTGGAACGATCCTTATGTCAAAAACGGGTGTGAATGATGGAAAAGAGTCCCTTGGATCAGAAAAAGTGTCGC 100 110 120 130 140 150 160 170 180 190 410 420 430 440 450 460 470 480 490 500 AT2G46 ATCCTGAGATGGCCAATGAAGATCGACAACAATCAAAGCCTGAAGAGAAAACTCTGCAGGAAGACAACTGTTCAGATTGTTTCACTCATCAGTATCTCTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_137 ATCCTGAGATGGCCAATGAAGATCGACAACAATCAAAGCCTGAAGAGAAAACTCTGCAGGAAGACAACTGTTCAGATTGTTTCACTCATCAGTATCTCTC 200 210 220 230 240 250 260 270 280 290 510 520 530 540 550 560 570 580 590 600 AT2G46 TGCTGCATCCTCCATGAATAAAAGTTGTATAGAGACATCAAACGCAAGCACTTTCCGCGAGTTCTTGCCTTCACGGGAAGAGGGAAGTCAGAATAACAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_137 TGCTGCATCCTCCATGAATAAAAGTTGTATAGAGACATCAAACGCAAGCACTTTCCGCGAGTTCTTGCCTTCACGGGAAGAGGGAAGTCAGAATAACAGG 300 310 320 330 340 350 360 370 380 390 610 620 630 640 650 660 670 680 690 700 AT2G46 GTAAGAAAGGAGTCAAACTCAGATTTGAATGCAAAATCTCTGGAAAACGGTAATGAGCAAGGACCTCAGACTTATCCGATGCATATCCCTGTGCTAGTGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_137 GTAAGAAAGGAGTCAAACTCAGATTTGAATGCAAAATCTCTGGAAAACGGTAATGAGCAAGGACCTCAGACTTATCCGATGCATATCCCTGTGCTAGTGC 400 410 420 430 440 450 460 470 480 490 710 720 730 740 750 760 770 780 790 800 AT2G46 CATTGGGGAGCTCAATAACAAGTTCTCTATCACATCCTCCTTCAGAGCCAGATAGTCATCCCCACACAGTTGCAGGAGATTATCAGTCGTTTCCTAATCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_137 CATTGGGGAGCTCAATAACAAGTTCTCTATCACATCCTCCTTCAGAGCCAGATAGTCATCCCCACACAGTTGCAGGAGATTATCAGTCGTTTCCTAATCA 500 510 520 530 540 550 560 570 580 590 810 820 830 840 850 860 870 880 890 900 AT2G46 TATAATGTCAACCCTTTTACAAACACCGGCTCTTTATACTGCCGCAACTTTCGCCTCATCATTTTGGCCTCCCGATTCTAGTGGTGGCTCACCTGTTCCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_137 TATAATGTCAACCCTTTTACAAACACCGGCTCTTTATACTGCCGCAACTTTCGCCTCATCATTTTGGCCTCCCGATTCTAGTGGTGGCTCACCTGTTCCA 600 610 620 630 640 650 660 670 680 690 910 920 930 940 950 960 970 980 990 1000 AT2G46 GGGAACTCACCTCCGAATCTGGCTGCCATGGCCGCAGCCACTGTTGCAGCTGCTAGTGCTTGGTGGGCTGCCAATGGATTATTACCTTTATGTGCTCCTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_137 GGGAACTCACCTCCGAATCTGGCTGCCATGGCCGCAGCCACTGTTGCAGCTGCTAGTGCTTGGTGGGCTGCCAATGGATTATTACCTTTATGTGCTCCTC 700 710 720 730 740 750 760 770 780 790 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT2G46 TTAGTTCAGGTGGTTTCACTAGTCATCCTCCATCTACTTTTGGACCATCATGTGATGTAGAGTACACAAAAGCAAGCACTTTACAACATGGTTCTGTGCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_137 TTAGTTCAGGTGGTTTCACTAGTCATCCTCCATCTACTTTTGGACCATCATGTGATGTAGAGTACACAAAAGCAAGCACTTTACAACATGGTTCTGTGCA 800 810 820 830 840 850 860 870 880 890 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT2G46 GAGCCGAGAGCAAGAACACTCCGAGGCATCAAAGGCTCGATCTTCACTGGACTCAGAGGATGTTGAAAATAAGAGTAAACCAGTTTGTCATGAGCAGCCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_137 GAGCCGAGAGCAAGAACACTCCGAGGCATCAAAGGCTCGATCTTCACTGGACTCAGAGGATGTTGAAAATAAGAGTAAACCAGTTTGTCATGAGCAGCCT 900 910 920 930 940 950 960 970 980 990 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT2G46 TCTGCAACACCTGAGAGTGATGCAAAGGGTTCAGATGGAGCAGGAGACAGAAAACAAGTTGACCGGTCCTCGTGTGGCTCAAACACTCCGTCGAGTAGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_137 TCTGCAACACCTGAGAGTGATGCAAAGGGTTCAGATGGAGCAGGAGACAGAAAACAAGTTGACCGGTCCTCGTGTGGCTCAAACACTCCGTCGAGTAGTG 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT2G46 ATGATGTTGAGGCGGATGCATCAGAAAGGCAAGAGGATGGCACCAATGGTGAGGTGAAAGAAACGAATGAAGACACTAATAAACCTCAAACTTCAGAGTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_137 ATGATGTTGAGGCGGATGCATCAGAAAGGCAAGAGGATGGCACCAATGGTGAGGTGAAAGAAACGAATGAAGACACTAATAAACCTCAAACTTCAGAGTC 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT2G46 CAATGCACGCCGCAGTAGAATCAGCTCCAATATAACCGATCCATGGAAGTCTGTGTCTGACGAGGGTCGAATTGCCTTCCAAGCTCTCTTCTCCAGAGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_137 CAATGCACGCCGCAGTAGAATCAGCTCCAATATAACCGATCCATGGAAGTCTGTGTCTGACGAGGGTCGAATTGCCTTCCAAGCTCTCTTCTCCAGAGAG 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT2G46 GTATTGCCGCAAAGTTTTACATATCGAGAAGAACACAGAGAGGAAGAACAACAACAACAAGAACAAAGATATCCAATGGCACTTGATCTTAACTTCACAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_137 GTATTGCCGCAAAGTTTTACATATCGAGAAGAACACAGAGAGGAAGAACAACAACAACAAGAACAAAGATATCCAATGGCACTTGATCTTAACTTCACAG 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1610 1620 1630 1640 1650 1660 1670 1680 1690 1700 AT2G46 CTCAGTTAACACCAGTTGATGATCAAGAGGAGAAGAGAAACACAGGATTTCTTGGAATCGGATTAGATGCTTCAAAGCTAATGAGTAGAGGAAGAACAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_137 CTCAGTTAACACCAGTTGATGATCAAGAGGAGAAGAGAAACACAGGATTTCTTGGAATCGGATTAGATGCTTCAAAGCTAATGAGTAGAGGAAGAACAGG 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1710 1720 1730 1740 1750 1760 1770 1780 1790 1800 AT2G46 TTTTAAACCATACAAAAGATGTTCCATGGAAGCCAAAGAAAGTAGAATCCTCAACAACAATCCTATCATTCATGTGGAACAGAAAGATCCCAAACGGATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_137 TTTTAAACCATACAAAAGATGTTCCATGGAAGCCAAAGAAAGTAGAATCCTCAACAACAATCCTATCATTCATGTGGAACAGAAAGATCCCAAACGGATG 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1810 1820 AT2G46 CGGTTGGAAACTCAAGCTTCCACA :::::::::::::::::::::::: RE_137 CGGTTGGAAACTCAAGCTTCCACA 1600 1610 10 20 30 40 50 60 70 80 90 100 AT2G46 METNSSGEDLVIKTRKPYTITKQRERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQIRSHAQKFFSKVEKEAEAKGVAMGQALDIAIPPPRPKRKP ::::::::::::::::::::::::::::: RE_137 ----------------------------------------------------------------------MVEKEAEAKGVAMGQALDIAIPPPRPKRKP 10 20 30 110 120 130 140 150 160 170 180 190 200 AT2G46 NNPYPRKTGSGTILMSKTGVNDGKESLGSEKVSHPEMANEDRQQSKPEEKTLQEDNCSDCFTHQYLSAASSMNKSCIETSNASTFREFLPSREEGSQNNR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_137 NNPYPRKTGSGTILMSKTGVNDGKESLGSEKVSHPEMANEDRQQSKPEEKTLQEDNCSDCFTHQYLSAASSMNKSCIETSNASTFREFLPSREEGSQNNR 40 50 60 70 80 90 100 110 120 130 210 220 230 240 250 260 270 280 290 300 AT2G46 VRKESNSDLNAKSLENGNEQGPQTYPMHIPVLVPLGSSITSSLSHPPSEPDSHPHTVAGDYQSFPNHIMSTLLQTPALYTAATFASSFWPPDSSGGSPVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_137 VRKESNSDLNAKSLENGNEQGPQTYPMHIPVLVPLGSSITSSLSHPPSEPDSHPHTVAGDYQSFPNHIMSTLLQTPALYTAATFASSFWPPDSSGGSPVP 140 150 160 170 180 190 200 210 220 230 310 320 330 340 350 360 370 380 390 400 AT2G46 GNSPPNLAAMAAATVAAASAWWAANGLLPLCAPLSSGGFTSHPPSTFGPSCDVEYTKASTLQHGSVQSREQEHSEASKARSSLDSEDVENKSKPVCHEQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_137 GNSPPNLAAMAAATVAAASAWWAANGLLPLCAPLSSGGFTSHPPSTFGPSCDVEYTKASTLQHGSVQSREQEHSEASKARSSLDSEDVENKSKPVCHEQP 240 250 260 270 280 290 300 310 320 330 410 420 430 440 450 460 470 480 490 500 AT2G46 SATPESDAKGSDGAGDRKQVDRSSCGSNTPSSSDDVEADASERQEDGTNGEVKETNEDTNKPQTSESNARRSRISSNITDPWKSVSDEGRIAFQALFSRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_137 SATPESDAKGSDGAGDRKQVDRSSCGSNTPSSSDDVEADASERQEDGTNGEVKETNEDTNKPQTSESNARRSRISSNITDPWKSVSDEGRIAFQALFSRE 340 350 360 370 380 390 400 410 420 430 510 520 530 540 550 560 570 580 590 600 AT2G46 VLPQSFTYREEHREEEQQQQEQRYPMALDLNFTAQLTPVDDQEEKRNTGFLGIGLDASKLMSRGRTGFKPYKRCSMEAKESRILNNNPIIHVEQKDPKRM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_137 VLPQSFTYREEHREEEQQQQEQRYPMALDLNFTAQLTPVDDQEEKRNTGFLGIGLDASKLMSRGRTGFKPYKRCSMEAKESRILNNNPIIHVEQKDPKRM 440 450 460 470 480 490 500 510 520 530 AT2G46 RLETQAST :::::::: RE_137 RLETQAST

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