◆◆◆RE_1381 detail◆◆◆

Code name	RE_1381
Locus	AT2G47460
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.50%一致
comment	0314_アミノ酸配列70%以上一致
sequence	>RE_1381_1113bp ATGGGAAGAGCGCCATGTTGCGAGAAGGTCGGTATCAAGAGAGGGCGGTGGACGGCGGAGGAGGACCAGATTCTCTCCAACTACATTCAATCCAACGGTG AAGGTTCTTGGAGATCTCTCCCCAAAAATGCCGGATTAAAAAGGTGTGGAAAGAGCTGTAGATTGAGATGGATAAACTATCTAAGATCAGACCTCAAGCG TGGAAACATAACTCCAGAAGAAGAAGAACTCGTTGTTAAATTGCATTCCACTTTGGGAAACAGGTGGTCACTAATCGCGGGTCATCTACCAGGGAGAACA GACAACGAAATAAAAAATTATTGGAACTCTCATCTCAGCCGTAAACTCCACAACTTCATTAGGAAGCCATCCATCTCTCAAGACGTCTCCGCCGTAATCA TGACGAACGCTTCTTCAGCGCCACCGCCGCCGCAGGCAAAACGCATACTTGGGAGAACGAGTAGGTCCGCTATGAAACCAAAAATCCACAGAACAAAAAC TCGTAAAACGAAGAACACGTCTGCACCACCGGAGCCTAACGCCGATGTAGCTGGGGCTGATAAAGAAGCATTAATGGTGGAGTCAAGTGGAGCCGAGGCT GAGCTAGGACGACCATGTGACTACTATGGAGATGATTGTAACAAAAATCTCATGAGCATTAATGGCGATAATGGAGTTTTAACGTTTGATGATGATATCA TCGATCTTTTGTTGGACGAGTCAGATCCTGGCCACTTGTACACAAACACAACGTGCGGTGGTGATGGGGAGTTGCATAACATAAGAGACTCTGAAGGAGC CAGAGGGTTCTCGGATACTTGGAACCAAGGGAATCTCGACTGTCTTCTTCAGTCTTGTCCATCGGTGGAGTCGTTTCTCAACTACGACCACCAAGTTAAC GATGCGTCGACGGATGAGTTTATCGATTGGGATTGTGTTTGGCAAGAAGGTAGTGATAATAATCTTTGGCATGAGAAAGAGAATCCCGACTCAATGGTCT CGTGGCTTTTAGACGGTGATGATGAGGCCACGATCGGGAATAGTAATTGTGAGAACTTTGGAGAACCGTTAGATCATGACGACGAAAGCGCTTTGGTCGC TTGGCTTCTGTCA >RE_1381_translated MGRAPCCEKVGIKRGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINYLRSDLKRGNITPEEEELVVKLHSTLGNRWSLIAGHLPGRT DNEIKNYWNSHLSRKLHNFIRKPSISQDVSAVIMTNASSAPPPPQAKRILGRTSRSAMKPKIHRTKTRKTKNTSAPPEPNADVAGADKEALMVESSGAEA ELGRPCDYYGDDCNKNLMSINGDNGVLTFDDDIIDLLLDESDPGHLYTNTTCGGDGELHNIRDSEGARGFSDTWNQGNLDCLLQSCPSVESFLNYDHQVN DASTDEFIDWDCVWQEGSDNNLWHEKENPDSMVSWLLDGDDEATIGNSNCENFGEPLDHDDESALVAWLLS
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1111/1113 (99.8%)（アミノ酸配列で369/371 (99.5%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT2G47 ATGGGAAGAGCGCCATGTTGCGAGAAGGTCGGTATCAAGAGAGGGCGGTGGACGGCGGAGGAGGACCAGATTCTCTCCAACTACATTCAATCCAACGGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 ATGGGAAGAGCGCCATGTTGCGAGAAGGTCGGTATCAAGAGAGGGCGGTGGACGGCGGAGGAGGACCAGATTCTCTCCAACTACATTCAATCCAACGGTG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G47 AAGGTTCTTGGAGATCTCTCCCCAAAAATGCCGGATTAAAAAGGTGTGGAAAGAGCTGTAGATTGAGATGGATAAACTATCTAAGATCAGACCTCAAGCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 AAGGTTCTTGGAGATCTCTCCCCAAAAATGCCGGATTAAAAAGGTGTGGAAAGAGCTGTAGATTGAGATGGATAAACTATCTAAGATCAGACCTCAAGCG 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G47 TGGAAACATAACTCCAGAAGAAGAAGAACTCGTTGTTAAATTGCATTCCACTTTGGGAAACAGGTGGTCACTAATCGCGGGTCATCTACCAGGGAGAACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 TGGAAACATAACTCCAGAAGAAGAAGAACTCGTTGTTAAATTGCATTCCACTTTGGGAAACAGGTGGTCACTAATCGCGGGTCATCTACCAGGGAGAACA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT2G47 GACAACGAAATAAAAAATTATTGGAACTCTCATCTCAGCCGTAAACTCCACAACTTCATTAGGAAGCCATCCATCTCTCAAGACGTCTCCGCCGTAATCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 GACAACGAAATAAAAAATTATTGGAACTCTCATCTCAGCCGTAAACTCCACAACTTCATTAGGAAGCCATCCATCTCTCAAGACGTCTCCGCCGTAATCA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT2G47 TGACGAACGCTTCTTCAGCGCCACCGCCGCCGCAGGCAAAACGCAGACTTGGGAGAACGAGTAGGTCCGCTATGAAACCAAAAATCCACAGAACAAAAAC ::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 TGACGAACGCTTCTTCAGCGCCACCGCCGCCGCAGGCAAAACGCATACTTGGGAGAACGAGTAGGTCCGCTATGAAACCAAAAATCCACAGAACAAAAAC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT2G47 TCGTAAAACGAAGAAAACGTCTGCACCACCGGAGCCTAACGCCGATGTAGCTGGGGCTGATAAAGAAGCATTAATGGTGGAGTCAAGTGGAGCCGAGGCT ::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 TCGTAAAACGAAGAACACGTCTGCACCACCGGAGCCTAACGCCGATGTAGCTGGGGCTGATAAAGAAGCATTAATGGTGGAGTCAAGTGGAGCCGAGGCT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT2G47 GAGCTAGGACGACCATGTGACTACTATGGAGATGATTGTAACAAAAATCTCATGAGCATTAATGGCGATAATGGAGTTTTAACGTTTGATGATGATATCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 GAGCTAGGACGACCATGTGACTACTATGGAGATGATTGTAACAAAAATCTCATGAGCATTAATGGCGATAATGGAGTTTTAACGTTTGATGATGATATCA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT2G47 TCGATCTTTTGTTGGACGAGTCAGATCCTGGCCACTTGTACACAAACACAACGTGCGGTGGTGATGGGGAGTTGCATAACATAAGAGACTCTGAAGGAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 TCGATCTTTTGTTGGACGAGTCAGATCCTGGCCACTTGTACACAAACACAACGTGCGGTGGTGATGGGGAGTTGCATAACATAAGAGACTCTGAAGGAGC 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT2G47 CAGAGGGTTCTCGGATACTTGGAACCAAGGGAATCTCGACTGTCTTCTTCAGTCTTGTCCATCGGTGGAGTCGTTTCTCAACTACGACCACCAAGTTAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 CAGAGGGTTCTCGGATACTTGGAACCAAGGGAATCTCGACTGTCTTCTTCAGTCTTGTCCATCGGTGGAGTCGTTTCTCAACTACGACCACCAAGTTAAC 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT2G47 GATGCGTCGACGGATGAGTTTATCGATTGGGATTGTGTTTGGCAAGAAGGTAGTGATAATAATCTTTGGCATGAGAAAGAGAATCCCGACTCAATGGTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 GATGCGTCGACGGATGAGTTTATCGATTGGGATTGTGTTTGGCAAGAAGGTAGTGATAATAATCTTTGGCATGAGAAAGAGAATCCCGACTCAATGGTCT 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT2G47 CGTGGCTTTTAGACGGTGATGATGAGGCCACGATCGGGAATAGTAATTGTGAGAACTTTGGAGAACCGTTAGATCATGACGACGAAAGCGCTTTGGTCGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 CGTGGCTTTTAGACGGTGATGATGAGGCCACGATCGGGAATAGTAATTGTGAGAACTTTGGAGAACCGTTAGATCATGACGACGAAAGCGCTTTGGTCGC 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 AT2G47 TTGGCTTCTGTCA ::::::::::::: RE_138 TTGGCTTCTGTCA 1110 10 20 30 40 50 60 70 80 90 100 AT2G47 MGRAPCCEKVGIKRGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINYLRSDLKRGNITPEEEELVVKLHSTLGNRWSLIAGHLPGRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 MGRAPCCEKVGIKRGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINYLRSDLKRGNITPEEEELVVKLHSTLGNRWSLIAGHLPGRT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT2G47 DNEIKNYWNSHLSRKLHNFIRKPSISQDVSAVIMTNASSAPPPPQAKRRLGRTSRSAMKPKIHRTKTRKTKKTSAPPEPNADVAGADKEALMVESSGAEA :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::: :::::::::::::::::::::::::::: RE_138 DNEIKNYWNSHLSRKLHNFIRKPSISQDVSAVIMTNASSAPPPPQAKRILGRTSRSAMKPKIHRTKTRKTKNTSAPPEPNADVAGADKEALMVESSGAEA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT2G47 ELGRPCDYYGDDCNKNLMSINGDNGVLTFDDDIIDLLLDESDPGHLYTNTTCGGDGELHNIRDSEGARGFSDTWNQGNLDCLLQSCPSVESFLNYDHQVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 ELGRPCDYYGDDCNKNLMSINGDNGVLTFDDDIIDLLLDESDPGHLYTNTTCGGDGELHNIRDSEGARGFSDTWNQGNLDCLLQSCPSVESFLNYDHQVN 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 AT2G47 DASTDEFIDWDCVWQEGSDNNLWHEKENPDSMVSWLLDGDDEATIGNSNCENFGEPLDHDDESALVAWLLS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 DASTDEFIDWDCVWQEGSDNNLWHEKENPDSMVSWLLDGDDEATIGNSNCENFGEPLDHDDESALVAWLLS 310 320 330 340 350 360 370

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