| Code name | RE_1383 | |||
|---|---|---|---|---|
| Locus | AT3G01530 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.50%一致 | |||
| comment | 0420_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_1383_618bp ATGGAGACGACGATGAAGAAGAAAGGGAGTGTGAAAGCGACAATAACGTCACAGAAAGAAGAAGAAGGAACAGTGAGAAAAGGACCTTGGACTATGGAAG AAGATTTCATCCTCTTTAATTACATCCTTAATCATGGTGAAGGTCTTTGGAACTCTGTCGCCAAAGCCTCTGGTCTAAAACGTACTGGAAAAAGTTGTCG GCTCCGGTGGCTGAACTATCTCCGACCAGATGTGCGGCGAGGGAACATAACCGAAGAAGAACAGCTTTTGATCATTCAGCTTCATGCTAAGCTTGGAAAC AGGTGGTCGAAGATTGCGAAGCATCTTCCGGGAAGAACGGACAACGAGATAAAGAACTTCTGGAGGACAAAGATTCAGAGACACATGAAAGTGTCATCGG AAAATATGATGAATCATCAACATCATTGTTCGGGAAACTCACAGAGCTCGGGGATGACGACGCAAGGCAGCTCCGGCAAAGCCATAGACACGGCTGAGAG CTTCTCTCAGGCGAAGACGACGACGTTTAATGTGGTGGAACAACAGTCAAACGAGAATTACTGGAACGTTGAAGATCTGTGGCCCGTCCACTTGCTTAAT GGTGACCACCATGTGATT >RE_1383_translated METTMKKKGSVKATITSQKEEEGTVRKGPWTMEEDFILFNYILNHGEGLWNSVAKASGLKRTGKSCRLRWLNYLRPDVRRGNITEEEQLLIIQLHAKLGN RWSKIAKHLPGRTDNEIKNFWRTKIQRHMKVSSENMMNHQHHCSGNSQSSGMTTQGSSGKAIDTAESFSQAKTTTFNVVEQQSNENYWNVEDLWPVHLLN GDHHVI |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 617/618 (99.8%)（アミノ酸配列で205/206 (99.5%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT3G01 ATGGAGACGACGATGAAGAAGAAAGGGAGAGTGAAAGCGACAATAACGTCACAGAAAGAAGAAGAAGGAACAGTGAGAAAAGGACCTTGGACTATGGAAG
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_138 ATGGAGACGACGATGAAGAAGAAAGGGAGTGTGAAAGCGACAATAACGTCACAGAAAGAAGAAGAAGGAACAGTGAGAAAAGGACCTTGGACTATGGAAG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G01 AAGATTTCATCCTCTTTAATTACATCCTTAATCATGGTGAAGGTCTTTGGAACTCTGTCGCCAAAGCCTCTGGTCTAAAACGTACTGGAAAAAGTTGTCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_138 AAGATTTCATCCTCTTTAATTACATCCTTAATCATGGTGAAGGTCTTTGGAACTCTGTCGCCAAAGCCTCTGGTCTAAAACGTACTGGAAAAAGTTGTCG
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT3G01 GCTCCGGTGGCTGAACTATCTCCGACCAGATGTGCGGCGAGGGAACATAACCGAAGAAGAACAGCTTTTGATCATTCAGCTTCATGCTAAGCTTGGAAAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_138 GCTCCGGTGGCTGAACTATCTCCGACCAGATGTGCGGCGAGGGAACATAACCGAAGAAGAACAGCTTTTGATCATTCAGCTTCATGCTAAGCTTGGAAAC
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT3G01 AGGTGGTCGAAGATTGCGAAGCATCTTCCGGGAAGAACGGACAACGAGATAAAGAACTTCTGGAGGACAAAGATTCAGAGACACATGAAAGTGTCATCGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_138 AGGTGGTCGAAGATTGCGAAGCATCTTCCGGGAAGAACGGACAACGAGATAAAGAACTTCTGGAGGACAAAGATTCAGAGACACATGAAAGTGTCATCGG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT3G01 AAAATATGATGAATCATCAACATCATTGTTCGGGAAACTCACAGAGCTCGGGGATGACGACGCAAGGCAGCTCCGGCAAAGCCATAGACACGGCTGAGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_138 AAAATATGATGAATCATCAACATCATTGTTCGGGAAACTCACAGAGCTCGGGGATGACGACGCAAGGCAGCTCCGGCAAAGCCATAGACACGGCTGAGAG
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT3G01 CTTCTCTCAGGCGAAGACGACGACGTTTAATGTGGTGGAACAACAGTCAAACGAGAATTACTGGAACGTTGAAGATCTGTGGCCCGTCCACTTGCTTAAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_138 CTTCTCTCAGGCGAAGACGACGACGTTTAATGTGGTGGAACAACAGTCAAACGAGAATTACTGGAACGTTGAAGATCTGTGGCCCGTCCACTTGCTTAAT
510 520 530 540 550 560 570 580 590 600
610
AT3G01 GGTGACCACCATGTGATT
::::::::::::::::::
RE_138 GGTGACCACCATGTGATT
610
10 20 30 40 50 60 70 80 90 100
AT3G01 METTMKKKGRVKATITSQKEEEGTVRKGPWTMEEDFILFNYILNHGEGLWNSVAKASGLKRTGKSCRLRWLNYLRPDVRRGNITEEEQLLIIQLHAKLGN
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_138 METTMKKKGSVKATITSQKEEEGTVRKGPWTMEEDFILFNYILNHGEGLWNSVAKASGLKRTGKSCRLRWLNYLRPDVRRGNITEEEQLLIIQLHAKLGN
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G01 RWSKIAKHLPGRTDNEIKNFWRTKIQRHMKVSSENMMNHQHHCSGNSQSSGMTTQGSSGKAIDTAESFSQAKTTTFNVVEQQSNENYWNVEDLWPVHLLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_138 RWSKIAKHLPGRTDNEIKNFWRTKIQRHMKVSSENMMNHQHHCSGNSQSSGMTTQGSSGKAIDTAESFSQAKTTTFNVVEQQSNENYWNVEDLWPVHLLN
110 120 130 140 150 160 170 180 190 200
AT3G01 GDHHVI
::::::
RE_138 GDHHVI
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