◆◆◆RE_1387 detail◆◆◆

Code name	RE_1387
Locus	AT3G09370
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列98.60%一致
comment	0520_20080115_1387_FRW1W2_5555
sequence	>RE_1387_1530bp ATGAGCTCCACTTTTAATCCAGCCGCTTCTTCTCCAGATGAGATGATGGATCTTCAGGAAGAAACAGGTGAAGTGAAAATTGAGGATCAGTGTGTAGAAA ATAAGCAATCAACACCTGCTTCGTGCTCTTCTGTATCTGAAGGCAGTGCTGGTAGTTCCCACAAGTCACCTACAATTGCAAGTCCTGCCACAGTATCACC TACTCATAGGTACCTCGGGAGGACGAGTGGCCCTATAAGGCGAGCCAAAGGTGGGTGGACTCCGGAAGAGGATGAGACATTGAGACAAGCAGTTGACACG TTTAAAGGCAAGAGCTGGAAGAACATAGCGAAATCTTTCCCTGATAGAACTGAAGTTCAATTCCTGCATCGGTGGCAGAAAGTTCTAAATCCAGACCTTA TTAAGGGACCTTGGACACATGAGGAGGATGAGAAAATCGTTGAACTGGTTGAAAAATACGGGCCTGCGAAATGGTCTATTATCGCACAGTCTTTACCAGG TCGAATTGGGAAGCAATGCCGAGAGAGGTGGCATAACCATTTGAATCCTGATATTAACAAGGATGCTTGGACCACAGAGGAAGAAGTAGCTCTCATGAAT GCTCATCGAAGCCACGGAAACAAATGGGCTGAAATTGCTAAGGTCTTACCCGGCAGGACTGATAATGCAATAAAGAACCATTGGAATAGTTCATTGAAAA AGAAGTCAGAATTCTACTTATTGACTGGTAGGTTACCACCACCAACAACAACAAGGAATGGTGTTCCTGATAGTGTAACCAAACGTTCATCGTCTGCTCA GAAAAGGGTTTTTGGTTCAGTTGCTCAAACCTCATCAGTAACTACAGATGTAAACAATCTCGCTGAAGACGGAAATGGCCAAATAAACTCATCTGTTCCT GTCGAAGAAGTAGTAGCTGCTTCACGAATGACTAGTCTTAATGAGTATGCTCGTTCTCCTCAGTTGCCTAACCCAGAGCCATTGCCAGAGAATGGTGGAG CTGCAAATAATGGTTATCATCTGTACTACACGCCTCAAATAGACTATTACAGGGCGTCAGAAGTGGATACGCAGCGTATGTATGGGAATGAATGTGGTTG CAGTCCAAGCGCATCACCAGTTAGCTTCTTCACTCCACCGCCGTGTAGGAATGTGCACAGTAACGGTTCGGCTCCAAGAAGTCCTGAATCTTACCTGAGA GAAGCTGGTAGAACTTACCCAAACACACCATCCATATTCAGGAAAAGACGACCCAGGGTTGTTGTTCAGGATAACAACAACGCCAAGAAAACAGATGAAG CTAAAGAGGTTGATCAAAAGGTGAATGATGGTAAGGATAGTTCAGAGATTCAAAATAATGGATCAAATGCTTACAATCTATCTCCTCCATATCGGATAAG ATCGAAAAGGACAGCAGTTTTCAAATCAAGACAGCTTGAGTTTATATCTAGAGAGGAAGAGAAAGCTGATGATGAAACCAAATCATCTGAGAAAGATATG TTGATTGATGGAGATTCTCAACTCCTAGGC >RE_1387_translated MSSTFNPAASSPDEMMDLQEETGEVKIEDQCVENKQSTPASCSSVSEGSAGSSHKSPTIASPATVSPTHRYLGRTSGPIRRAKGGWTPEEDETLRQAVDT FKGKSWKNIAKSFPDRTEVQFLHRWQKVLNPDLIKGPWTHEEDEKIVELVEKYGPAKWSIIAQSLPGRIGKQCRERWHNHLNPDINKDAWTTEEEVALMN AHRSHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKSEFYLLTGRLPPPTTTRNGVPDSVTKRSSSAQKRVFGSVAQTSSVTTDVNNLAEDGNGQINSSVP VEEVVAASRMTSLNEYARSPQLPNPEPLPENGGAANNGYHLYYTPQIDYYRASEVDTQRMYGNECGCSPSASPVSFFTPPPCRNVHSNGSAPRSPESYLR EAGRTYPNTPSIFRKRRPRVVVQDNNNAKKTDEAKEVDQKVNDGKDSSEIQNNGSNAYNLSPPYRIRSKRTAVFKSRQLEFISREEEKADDETKSSEKDM LIDGDSQLLG
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1513/1530 (98.9%)（アミノ酸配列で503/510 (98.6%)）一致しました。 10 20 30 40 50 60 70 80 AT3G09 ATGAGCTCCACTTTTAATCCAGCCGCTTCTTCTCCAGATG---------------AGGAAGAAACAGGTGAAGTGAAAATTGAGGATCAGTGTGTAGAAA :::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::: RE_138 ATGAGCTCCACTTTTAATCCAGCCGCTTCTTCTCCAGATGAGATGATGGATCTTCAGGAAGAAACAGGTGAAGTGAAAATTGAGGATCAGTGTGTAGAAA 10 20 30 40 50 60 70 80 90 100 90 100 110 120 130 140 150 160 170 180 AT3G09 ATAAGCAATCAACACCTGCTTCGTGCTCTTCTGTATCTGAAGGCAGTGCTGGTAGTTCCCACAAGTCACCTACAATTGCAAGTCCTGCCACAGTATCACC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 ATAAGCAATCAACACCTGCTTCGTGCTCTTCTGTATCTGAAGGCAGTGCTGGTAGTTCCCACAAGTCACCTACAATTGCAAGTCCTGCCACAGTATCACC 110 120 130 140 150 160 170 180 190 200 190 200 210 220 230 240 250 260 270 280 AT3G09 TACTCATAGGTACCTCGGGAGGACGAGTGGCCCTATAAGGCGAGCCAAAGGTGGGTGGACTCCGGAAGAGGATGAGACATTGAGACAAGCAGTTGACACG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 TACTCATAGGTACCTCGGGAGGACGAGTGGCCCTATAAGGCGAGCCAAAGGTGGGTGGACTCCGGAAGAGGATGAGACATTGAGACAAGCAGTTGACACG 210 220 230 240 250 260 270 280 290 300 290 300 310 320 330 340 350 360 370 380 AT3G09 TTTAAAGGCAAGAGCTGGAAGAACATAGCGAAATCTTTCCCTGATAGAACTGAAGTTCAATGCCTGCATCGGTGGCAGAAAGTTCTAAATCCAGACCTTA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::: RE_138 TTTAAAGGCAAGAGCTGGAAGAACATAGCGAAATCTTTCCCTGATAGAACTGAAGTTCAATTCCTGCATCGGTGGCAGAAAGTTCTAAATCCAGACCTTA 310 320 330 340 350 360 370 380 390 400 390 400 410 420 430 440 450 460 470 480 AT3G09 TTAAGGGACCTTGGACACATGAGGAGGATGAGAAAATCGTTGAACTGGTTGAAAAATACGGGCCTGCGAAATGGTCTATTATCGCACAGTCTTTACCAGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 TTAAGGGACCTTGGACACATGAGGAGGATGAGAAAATCGTTGAACTGGTTGAAAAATACGGGCCTGCGAAATGGTCTATTATCGCACAGTCTTTACCAGG 410 420 430 440 450 460 470 480 490 500 490 500 510 520 530 540 550 560 570 580 AT3G09 TCGAATTGGGAAGCAATGCCGAGAGAGGTGGCATAACCATTTGAATCCTGATATTAACAAGGATGCTTGGACCACAGAGGAAGAAGTAGCTCTCATGAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 TCGAATTGGGAAGCAATGCCGAGAGAGGTGGCATAACCATTTGAATCCTGATATTAACAAGGATGCTTGGACCACAGAGGAAGAAGTAGCTCTCATGAAT 510 520 530 540 550 560 570 580 590 600 590 600 610 620 630 640 650 660 670 680 AT3G09 GCTCATCGAAGCCACGGAAACAAATGGGCTGAAATTGCTAAGGTCTTACCCGGCAGGACTGATAATGCAATAAAGAACCATTGGAATAGTTCATTGAAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 GCTCATCGAAGCCACGGAAACAAATGGGCTGAAATTGCTAAGGTCTTACCCGGCAGGACTGATAATGCAATAAAGAACCATTGGAATAGTTCATTGAAAA 610 620 630 640 650 660 670 680 690 700 690 700 710 720 730 740 750 760 770 780 AT3G09 AGAAGTCAGAATTCTACTTATTGACTGGTAGGTTACCACCACCAACAACAACAAGGAATGGTGTTCCTGATAGTGTAACCAAACGTTCATCGTCTGCTCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 AGAAGTCAGAATTCTACTTATTGACTGGTAGGTTACCACCACCAACAACAACAAGGAATGGTGTTCCTGATAGTGTAACCAAACGTTCATCGTCTGCTCA 710 720 730 740 750 760 770 780 790 800 790 800 810 820 830 840 850 860 870 880 AT3G09 GAAAAGGGTTTTTGGTTCAGTTGCTCAAACCTCATCAGTAACTACAGATGTAAACAATCTCGCTGAAGACGGAAATGGCCAAATAAACTCATCTGTTCCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 GAAAAGGGTTTTTGGTTCAGTTGCTCAAACCTCATCAGTAACTACAGATGTAAACAATCTCGCTGAAGACGGAAATGGCCAAATAAACTCATCTGTTCCT 810 820 830 840 850 860 870 880 890 900 890 900 910 920 930 940 950 960 970 980 AT3G09 GTCGAAGAAGTAGTAGCTGCTTCACGAATGACTAGTCTTAATGAGTATGCTCGTTCTCCTCAGTTGCCTAACCCAGAGCCATTGCCAGAGAATGGTGGAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 GTCGAAGAAGTAGTAGCTGCTTCACGAATGACTAGTCTTAATGAGTATGCTCGTTCTCCTCAGTTGCCTAACCCAGAGCCATTGCCAGAGAATGGTGGAG 910 920 930 940 950 960 970 980 990 1000 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 AT3G09 CTGCAAATAATGGTTATCATCTGTACTACACGCCTCAAATAGACTATTACAGGGCGTCAGAAGTGGATACGCAGCGTATGTATGGGAATGAATGTGGTTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 CTGCAAATAATGGTTATCATCTGTACTACACGCCTCAAATAGACTATTACAGGGCGTCAGAAGTGGATACGCAGCGTATGTATGGGAATGAATGTGGTTG 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 AT3G09 CAGTCCAAGCGCATCACCAGTTAGCTTCTTCACTCCACCGCCGTGTAGGAATGTGCACAGTAACGGTTCGACTCCAAGAAGTCCTGAATCTTACCTGAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::: RE_138 CAGTCCAAGCGCATCACCAGTTAGCTTCTTCACTCCACCGCCGTGTAGGAATGTGCACAGTAACGGTTCGGCTCCAAGAAGTCCTGAATCTTACCTGAGA 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 AT3G09 GAAGCTGGTAGAACTTACCCAAACACACCATCCATATTCAGGAAAAGACGACCCAGGGTTGTTGTTCAGGATAACAACAACGCCAAGAAAACAGATGAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 GAAGCTGGTAGAACTTACCCAAACACACCATCCATATTCAGGAAAAGACGACCCAGGGTTGTTGTTCAGGATAACAACAACGCCAAGAAAACAGATGAAG 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 AT3G09 CTAAAGAGGTTGATCAAAAGGTGAATGATGGTAAGGATAGTTCAGAGATTCAAAATAATGGATCAAATGCTTACAATCTATCTCCTCCATATCGGATAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 CTAAAGAGGTTGATCAAAAGGTGAATGATGGTAAGGATAGTTCAGAGATTCAAAATAATGGATCAAATGCTTACAATCTATCTCCTCCATATCGGATAAG 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 AT3G09 ATCGAAAAGGACAGCAGTTTTCAAATCAAGACAGCTTGAGTTTATATCTAGAGAGGAAGAGAAAGCTGATGATGAAACCAAATCATCTGAGAAAGATATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 ATCGAAAAGGACAGCAGTTTTCAAATCAAGACAGCTTGAGTTTATATCTAGAGAGGAAGAGAAAGCTGATGATGAAACCAAATCATCTGAGAAAGATATG 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1490 1500 1510 AT3G09 TTGATTGATGGAGATTCTCAACTCCTAGGC :::::::::::::::::::::::::::::: RE_138 TTGATTGATGGAGATTCTCAACTCCTAGGC 1510 1520 1530 10 20 30 40 50 60 70 80 90 AT3G09 MSSTFNPAASSPDE-----EETGEVKIEDQCVENKQSTPASCSSVSEGSAGSSHKSPTIASPATVSPTHRYLGRTSGPIRRAKGGWTPEEDETLRQAVDT :::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 MSSTFNPAASSPDEMMDLQEETGEVKIEDQCVENKQSTPASCSSVSEGSAGSSHKSPTIASPATVSPTHRYLGRTSGPIRRAKGGWTPEEDETLRQAVDT 10 20 30 40 50 60 70 80 90 100 100 110 120 130 140 150 160 170 180 190 AT3G09 FKGKSWKNIAKSFPDRTEVQCLHRWQKVLNPDLIKGPWTHEEDEKIVELVEKYGPAKWSIIAQSLPGRIGKQCRERWHNHLNPDINKDAWTTEEEVALMN :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 FKGKSWKNIAKSFPDRTEVQFLHRWQKVLNPDLIKGPWTHEEDEKIVELVEKYGPAKWSIIAQSLPGRIGKQCRERWHNHLNPDINKDAWTTEEEVALMN 110 120 130 140 150 160 170 180 190 200 200 210 220 230 240 250 260 270 280 290 AT3G09 AHRSHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKSEFYLLTGRLPPPTTTRNGVPDSVTKRSSSAQKRVFGSVAQTSSVTTDVNNLAEDGNGQINSSVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 AHRSHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKSEFYLLTGRLPPPTTTRNGVPDSVTKRSSSAQKRVFGSVAQTSSVTTDVNNLAEDGNGQINSSVP 210 220 230 240 250 260 270 280 290 300 300 310 320 330 340 350 360 370 380 390 AT3G09 VEEVVAASRMTSLNEYARSPQLPNPEPLPENGGAANNGYHLYYTPQIDYYRASEVDTQRMYGNECGCSPSASPVSFFTPPPCRNVHSNGSTPRSPESYLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::: RE_138 VEEVVAASRMTSLNEYARSPQLPNPEPLPENGGAANNGYHLYYTPQIDYYRASEVDTQRMYGNECGCSPSASPVSFFTPPPCRNVHSNGSAPRSPESYLR 310 320 330 340 350 360 370 380 390 400 400 410 420 430 440 450 460 470 480 490 AT3G09 EAGRTYPNTPSIFRKRRPRVVVQDNNNAKKTDEAKEVDQKVNDGKDSSEIQNNGSNAYNLSPPYRIRSKRTAVFKSRQLEFISREEEKADDETKSSEKDM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 EAGRTYPNTPSIFRKRRPRVVVQDNNNAKKTDEAKEVDQKVNDGKDSSEIQNNGSNAYNLSPPYRIRSKRTAVFKSRQLEFISREEEKADDETKSSEKDM 410 420 430 440 450 460 470 480 490 500 500 AT3G09 LIDGDSQLLG :::::::::: RE_138 LIDGDSQLLG 510

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