◆◆◆RE_1391 detail◆◆◆

Code name	RE_1391
Locus	AT3G11440
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.60%一致
comment	0422_アミノ酸配列70%以上一致
sequence	>RE_1391_1659bp ATGAGTTACACGACGGCGACTGCTGATAGTGATGATGGTATGCACTCCAGCATCCATAATGAATCACCAGCTCCTGATAGTATTAGCAATGGCTGCAGAA GTAGAGGGAAAAGAAGTGTCCTGAAGAAAGGACCATGGACTTCAACTGAAGACGGGATTTTAATTGATTATGTAAAGAAGCACGGCGAGGGTAACTGGAA TGCTGTGCAGAAACACACTAGCCTGGCCCGTTGTGGTAAAAGCTGTCGTCTGAGATGGGCTAATCATCTGAGGCCAAACTTGAAGAAAGGAGCATTTAGC CAAGAAGAAGAACAGCTCATTGTTGAAATGCACGCCAAGATGGGAAATAAATGGGCACAGATGGCTGAACATTTACCTGGTCGAACAGATAATGAGATAA AGAATTATTGGAACACTCGTATCAAGAGGAGACAACGAGCAGGCTTACCACTTTACCCTCCTGAAATCTATGTTGATGACCTTCATTGGAGCGAAGAGTA TACAAAGAGTAATACCATAAGAGTAGATAGAAGAAGAAGACATCAAGATTTCTTGCAGTTGGGGAATTCTAAAGATAATGTCTTATTTGACGATCTAAAT TTTGCTGCTAGCTTGTTACCTGCCGCTTCTGACCTATCAGATTTGGTTGCATGCAACATGCTAGGAACTGGCGCAAGTTCTTCCCGGTATGAGAGCTACA TGCCACCAATATTGCCTTCCCCAAAGCAAATCTGGGAATCTGGATCTCGGTTTCCCATGTGCAGCAGTAACATAAAGCATGAATTCCAATCGCCGGAACA CTTTCAGAATACGGCTGTACAGAAGAATCCCAGATCTTGCAGTATCTCGCCTTGTGATGTTGATCATCATCCTTATGAAAACCAACATTCGTCTCATATG ATGATGGTTCCTGATAGCCATACAGTTACGTATGGCATGCATCCTACTTCTAAGCCCTTGTTTGGGGCAGTGAAGCTGGAGCTCCCTTCATTCCAATATT CAGAAACTAGTGCATTTGATCAGTGGAAGACGACTCCGTCACCTCCACACTCAGATCTCCTTGACTCTGTTGATGCCTATATTCAATCTCCACCACCATC GCAGGTAGAGGAGTCAGATTGTTTCTCTTCATGCGACACCGGCCTACTAGATATGTTACTTCATGAGGCCAAGATCAAAACTAGTGCGAAGCACAGTTTG TTGATGCCATCACCCCAGAAGAGTTTCAGTTCAACTACTTGCACGACCAATGTTACTCAGAATGTACCACGTGGCAGCGAAAACCTGATCAAATCAGGAG AATATGAAGATTCCCAAAAGTATTTGGGTCGCTCCGAGATTACAAGTCCCTCGCAACTTAGTGCAGGTGGTTTTTCATCAGCTTTTGCAGGGAATGTTGT AAAGACAGAAGAGTTGGATCAGGTTTGGGAACCAAAGAGAGTTGATATAACACGGCCTGATGTTTTACTTGCGTCGAGCTGGCTTGACCAAGGCTGTTAT GGCATTGTTAGTGACACAAGCAGCATGAGTGATGCGCTTGCACTTCTTGGTGGTGACGACATTGGGAACAGTTACGTGACTGTTGGGTCATCATCAGGTC AAGCACCACGAGGCGTCGGGTCTTATGGATGGACCAATATGCCTCCTGTTTGGTCGCTG >RE_1391_translated MSYTTATADSDDGMHSSIHNESPAPDSISNGCRSRGKRSVLKKGPWTSTEDGILIDYVKKHGEGNWNAVQKHTSLARCGKSCRLRWANHLRPNLKKGAFS QEEEQLIVEMHAKMGNKWAQMAEHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEIYVDDLHWSEEYTKSNTIRVDRRRRHQDFLQLGNSKDNVLFDDLN FAASLLPAASDLSDLVACNMLGTGASSSRYESYMPPILPSPKQIWESGSRFPMCSSNIKHEFQSPEHFQNTAVQKNPRSCSISPCDVDHHPYENQHSSHM MMVPDSHTVTYGMHPTSKPLFGAVKLELPSFQYSETSAFDQWKTTPSPPHSDLLDSVDAYIQSPPPSQVEESDCFSSCDTGLLDMLLHEAKIKTSAKHSL LMPSPQKSFSSTTCTTNVTQNVPRGSENLIKSGEYEDSQKYLGRSEITSPSQLSAGGFSSAFAGNVVKTEELDQVWEPKRVDITRPDVLLASSWLDQGCY GIVSDTSSMSDALALLGGDDIGNSYVTVGSSSGQAPRGVGSYGWTNMPPVWSL
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1657/1659 (99.9%)（アミノ酸配列で551/553 (99.6%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT3G11 ATGAGTTACACGACGGCGACTGCTGATAGTGATGATGGTATGCACTCCAGCATCCATAATGAATCACCAGCTCCTGATAGTATTAGCAATGGCTGCAGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 ATGAGTTACACGACGGCGACTGCTGATAGTGATGATGGTATGCACTCCAGCATCCATAATGAATCACCAGCTCCTGATAGTATTAGCAATGGCTGCAGAA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G11 GTAGAGGGAAAAGAAGTGTCCTGAAGAAAGGACCATGGACTTCAACTGAAGACGGGATTTTAATTGATTATGTAAAGAAGCACGGCGAGGGTAACTGGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 GTAGAGGGAAAAGAAGTGTCCTGAAGAAAGGACCATGGACTTCAACTGAAGACGGGATTTTAATTGATTATGTAAAGAAGCACGGCGAGGGTAACTGGAA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G11 TGCTGTGCAGAAACACACTAGCCTGGCCCGTTGTGGTAAAAGCTGTCGTCTGAGATGGGCTAATCATCTGAGGCCAAACTTGAAGAAAGGAGCATTTAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 TGCTGTGCAGAAACACACTAGCCTGGCCCGTTGTGGTAAAAGCTGTCGTCTGAGATGGGCTAATCATCTGAGGCCAAACTTGAAGAAAGGAGCATTTAGC 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G11 CAAGAAGAAGAACAGCTCATTGTTGAAATGCACGCCAAGATGGGAAATAAATGGGCACAGATGGCTGAACATTTACCTGGTCGAACAGATAATGAGATAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 CAAGAAGAAGAACAGCTCATTGTTGAAATGCACGCCAAGATGGGAAATAAATGGGCACAGATGGCTGAACATTTACCTGGTCGAACAGATAATGAGATAA 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT3G11 AGAATTATTGGAACACTCGTATCAAGAGGAGACAACGAGCAGGCTTACCACTTTACCCTCCTGAAATCTATGTTGATGACCTTCATTGGAGCGAAGAGTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 AGAATTATTGGAACACTCGTATCAAGAGGAGACAACGAGCAGGCTTACCACTTTACCCTCCTGAAATCTATGTTGATGACCTTCATTGGAGCGAAGAGTA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT3G11 TACAAAGAGTAATATCATAAGAGTAGATAGAAGAAGAAGACATCAAGATTTCTTGCAGTTGGGGAATTCTAAAGATAATGTCTTATTTGACGATCTAAAT :::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 TACAAAGAGTAATACCATAAGAGTAGATAGAAGAAGAAGACATCAAGATTTCTTGCAGTTGGGGAATTCTAAAGATAATGTCTTATTTGACGATCTAAAT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT3G11 TTTGCTGCTAGCTTGTTACCTGCCGCTTCTGACCTATCAGATTTGGTTGCATGCAACATGCTAGGAACTGGCGCAAGTTCTTCCCGGTATGAGAGCTACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 TTTGCTGCTAGCTTGTTACCTGCCGCTTCTGACCTATCAGATTTGGTTGCATGCAACATGCTAGGAACTGGCGCAAGTTCTTCCCGGTATGAGAGCTACA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT3G11 TGCCACCAATATTGCCTTCCCCAAAGCAAATCTGGGAATCTGGATCTCGGTTTCCCATGTGCAGCAGTAACATAAAGCATGAATTCCAATCGCCGGAACA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 TGCCACCAATATTGCCTTCCCCAAAGCAAATCTGGGAATCTGGATCTCGGTTTCCCATGTGCAGCAGTAACATAAAGCATGAATTCCAATCGCCGGAACA 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT3G11 CTTTCAGAATACGGCTGTACAGAAGAATCCCAGATCTTGCAGTATCTCGCCTTGTGATGTTGATCATCATCCTTATGAAAACCAACATTCGTCTCATATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 CTTTCAGAATACGGCTGTACAGAAGAATCCCAGATCTTGCAGTATCTCGCCTTGTGATGTTGATCATCATCCTTATGAAAACCAACATTCGTCTCATATG 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT3G11 ATGATGGTTCCTGATAGCCATACAGTTACGTATGGCATGCATCCTACTTCTAAGCCCTTGTTTGGGGCAGTGAAGCTGGAGCTCCCTTCATTCCAATATT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 ATGATGGTTCCTGATAGCCATACAGTTACGTATGGCATGCATCCTACTTCTAAGCCCTTGTTTGGGGCAGTGAAGCTGGAGCTCCCTTCATTCCAATATT 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT3G11 CAGAAACTAGTGCATTTGATCAGTGGAAGACGACTCCGTCACCTCCACACTCAGATCTCCTTGACTCTGTTGATGCCTATATTCAATCTCCACCACCATC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 CAGAAACTAGTGCATTTGATCAGTGGAAGACGACTCCGTCACCTCCACACTCAGATCTCCTTGACTCTGTTGATGCCTATATTCAATCTCCACCACCATC 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 AT3G11 GCAGGTAGAGGAGTCAGATTGTTTCTCTTCATGCGACACCGGCCTACTAGATATGTTACTTCATGAGGCCAAGATCAAAACTAGTGCGAAGCACAGTTTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 GCAGGTAGAGGAGTCAGATTGTTTCTCTTCATGCGACACCGGCCTACTAGATATGTTACTTCATGAGGCCAAGATCAAAACTAGTGCGAAGCACAGTTTG 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 AT3G11 TTGATGTCATCACCCCAGAAGAGTTTCAGTTCAACTACTTGCACGACCAATGTTACTCAGAATGTACCACGTGGCAGCGAAAACCTGATCAAATCAGGAG :::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 TTGATGCCATCACCCCAGAAGAGTTTCAGTTCAACTACTTGCACGACCAATGTTACTCAGAATGTACCACGTGGCAGCGAAAACCTGATCAAATCAGGAG 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 AT3G11 AATATGAAGATTCCCAAAAGTATTTGGGTCGCTCCGAGATTACAAGTCCCTCGCAACTTAGTGCAGGTGGTTTTTCATCAGCTTTTGCAGGGAATGTTGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 AATATGAAGATTCCCAAAAGTATTTGGGTCGCTCCGAGATTACAAGTCCCTCGCAACTTAGTGCAGGTGGTTTTTCATCAGCTTTTGCAGGGAATGTTGT 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 AT3G11 AAAGACAGAAGAGTTGGATCAGGTTTGGGAACCAAAGAGAGTTGATATAACACGGCCTGATGTTTTACTTGCGTCGAGCTGGCTTGACCAAGGCTGTTAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 AAAGACAGAAGAGTTGGATCAGGTTTGGGAACCAAAGAGAGTTGATATAACACGGCCTGATGTTTTACTTGCGTCGAGCTGGCTTGACCAAGGCTGTTAT 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 AT3G11 GGCATTGTTAGTGACACAAGCAGCATGAGTGATGCGCTTGCACTTCTTGGTGGTGACGACATTGGGAACAGTTACGTGACTGTTGGGTCATCATCAGGTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 GGCATTGTTAGTGACACAAGCAGCATGAGTGATGCGCTTGCACTTCTTGGTGGTGACGACATTGGGAACAGTTACGTGACTGTTGGGTCATCATCAGGTC 1510 1520 1530 1540 1550 1560 1570 1580 1590 1600 1610 1620 1630 1640 1650 AT3G11 AAGCACCACGAGGCGTCGGGTCTTATGGATGGACCAATATGCCTCCTGTTTGGTCGCTG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 AAGCACCACGAGGCGTCGGGTCTTATGGATGGACCAATATGCCTCCTGTTTGGTCGCTG 1610 1620 1630 1640 1650 10 20 30 40 50 60 70 80 90 100 AT3G11 MSYTTATADSDDGMHSSIHNESPAPDSISNGCRSRGKRSVLKKGPWTSTEDGILIDYVKKHGEGNWNAVQKHTSLARCGKSCRLRWANHLRPNLKKGAFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 MSYTTATADSDDGMHSSIHNESPAPDSISNGCRSRGKRSVLKKGPWTSTEDGILIDYVKKHGEGNWNAVQKHTSLARCGKSCRLRWANHLRPNLKKGAFS 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G11 QEEEQLIVEMHAKMGNKWAQMAEHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEIYVDDLHWSEEYTKSNIIRVDRRRRHQDFLQLGNSKDNVLFDDLN ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::: RE_139 QEEEQLIVEMHAKMGNKWAQMAEHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEIYVDDLHWSEEYTKSNTIRVDRRRRHQDFLQLGNSKDNVLFDDLN 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G11 FAASLLPAASDLSDLVACNMLGTGASSSRYESYMPPILPSPKQIWESGSRFPMCSSNIKHEFQSPEHFQNTAVQKNPRSCSISPCDVDHHPYENQHSSHM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 FAASLLPAASDLSDLVACNMLGTGASSSRYESYMPPILPSPKQIWESGSRFPMCSSNIKHEFQSPEHFQNTAVQKNPRSCSISPCDVDHHPYENQHSSHM 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G11 MMVPDSHTVTYGMHPTSKPLFGAVKLELPSFQYSETSAFDQWKTTPSPPHSDLLDSVDAYIQSPPPSQVEESDCFSSCDTGLLDMLLHEAKIKTSAKHSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 MMVPDSHTVTYGMHPTSKPLFGAVKLELPSFQYSETSAFDQWKTTPSPPHSDLLDSVDAYIQSPPPSQVEESDCFSSCDTGLLDMLLHEAKIKTSAKHSL 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT3G11 LMSSPQKSFSSTTCTTNVTQNVPRGSENLIKSGEYEDSQKYLGRSEITSPSQLSAGGFSSAFAGNVVKTEELDQVWEPKRVDITRPDVLLASSWLDQGCY :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 LMPSPQKSFSSTTCTTNVTQNVPRGSENLIKSGEYEDSQKYLGRSEITSPSQLSAGGFSSAFAGNVVKTEELDQVWEPKRVDITRPDVLLASSWLDQGCY 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 AT3G11 GIVSDTSSMSDALALLGGDDIGNSYVTVGSSSGQAPRGVGSYGWTNMPPVWSL ::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 GIVSDTSSMSDALALLGGDDIGNSYVTVGSSSGQAPRGVGSYGWTNMPPVWSL 510 520 530 540 550

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