| Code name | RE_1395 | |||
|---|---|---|---|---|
| Locus | AT3G13890 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列70.70%一致 | |||
| comment | 0115_アミノ酸配列70%以上一致 with AT3G13890.2_by_RIKE読まれた配列に有N | |||
| sequence |
>RE_1395_759bp ATGGGTCATCACTCATGCTGCAACAAGCAAAAGGTGAAGAGAGGGCTTTGGTCACCTGAAGAAGACGAAAAGCTCATCAACTACATCAATTCATATGGCC ATGGATGTTGGAGCTCTGTTCCTAAACATGCAGGTTTGCAGAGATGTGGAAAGAGTTGTAGATTAAGATGGATAAATTATCTAAGACCTGATCTTAAACG TGGAAGCTTCTCTCCTCAAGAAGCTGCTCTTATCATTGAGCTTCACAGCATTCTTGGTAACAGATGGGCTCAAATTGCTAAACATCTACCTGGAAGAACA GATAACGAGGTCAAGAATTTCTGGAACTCGAGCATTAAAAAGAAGCTCATGTCTCACCATCATCACGGTCATCATCATCAACCCTCACTTTCTTCTTGTC CTCATGATAATAATCTCCAATGGCCAGCGTTACCAGATTTCCCAGCGAGTACCATTTCTGGTTTCCAAGAAACCCTTCAAGATTATGATGATGCTAATAA ACTCAACGTGTTTGTGACACCATTCAACGATAATGCCAAAAAGTTATTATGTGGAGAAGTTCTCGAAGGCAAAGTACTATCTTCCTCCTCACCAATTTCA CAAGATCACGGCCTTTTTCTTCCCACCACGTACAATTTTCAAATGACTTCTACGAGTGATCATCAACATCATCATCGAGTGGACTCATACATCAATCACA TGATCATACCATCATCATCCTCATCGTCGCCAATCTCTTGTGGACAGTACGTCATAACT >RE_1395_translated MGHHSCCNKQKVKRGLWSPEEDEKLINYINSYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRT DNEVKNFWNSSIKKKLMSHHHHGHHHQPSLSSCPHDNNLQWPALPDFPASTISGFQETLQDYDDANKLNVFVTPFNDNAKKLLCGEVLEGKVLSSSSPIS QDHGLFLPTTYNFQMTSTSDHQHHHRVDSYINHMIIPSSSSSSPISCGQYVIT |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 757/1101 (68.8%)（アミノ酸配列で40/423 ( 9.5%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT3G13 ATGGGTCATCACTCATGCTGCAACAAGCAAAAGGTGAAGAGAGGGCTTTGGTCACCTGAAGAAGACGAAAAGCTCATCAACTACATCAATTCATATGGCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_139 ATGGGTCATCACTCATGCTGCAACAAGCAAAAGGTGAAGAGAGGGCTTTGGTCACCTGAAGAAGACGAAAAGCTCATCAACTACATCAATTCATATGGCC
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT3G13 ATGGATGTTGGAGCTCTGTTCCTAAACATGCAGGCACTTATACACATATACATGGGTTTTGTTTGCAGAGATGTGGAAAGAGTTGTAGATTAAGATGGAT
::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
RE_139 ATGGATGTTGGAGCTCTGTTCCTAAACATGCAG---------------------------GTTTGCAGAGATGTGGAAAGAGTTGTAGATTAAGATGGAT
110 120 130 140 150 160 170
210 220 230 240 250 260 270 280 290 300
AT3G13 AAATTATCTAAGACCTGATCTTAAACGTGGAAGCTTCTCTCCTCAAGAAGCTGCTCTTATCATTGAGCTTCACAGCATTCTTGGTAACAGATGGGCTCAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_139 AAATTATCTAAGACCTGATCTTAAACGTGGAAGCTTCTCTCCTCAAGAAGCTGCTCTTATCATTGAGCTTCACAGCATTCTTGGTAACAGATGGGCTCAA
180 190 200 210 220 230 240 250 260 270
310 320 330 340 350 360 370 380 390 400
AT3G13 ATTGCTAAACATCTACCTGGAAGAACAGATAACGAGGTCAAGAATTTCTGGAACTCGAGCATTAAAAAGAAGCTCATGTCTCACCATCATCACGGTCATC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_139 ATTGCTAAACATCTACCTGGAAGAACAGATAACGAGGTCAAGAATTTCTGGAACTCGAGCATTAAAAAGAAGCTCATGTCTCACCATCATCACGGTC---
280 290 300 310 320 330 340 350 360 370
410 420 430 440 450 460 470 480 490 500
AT3G13 ATCATCATCATCTCTCTTCCATGGCGAGTTTGCTCACAAACCTTCCTTATCACAATGGATTCAACCCTACTACAGTCGACGATGAAAGTTCAAGATTCAT
RE_139 ----------------------------------------------------------------------------------------------------
510 520 530 540 550 560 570 580 590 600
AT3G13 GTCCAATATCATCACAAACACTAACCCTAATTTCATCACTCCAAGCCATCTCTCTCTTCCTTCTCCTCATGTTATGACCCCATTGATGTTCCCAACCTCT
RE_139 ----------------------------------------------------------------------------------------------------
610 620 630 640 650 660 670 680 690 700
AT3G13 AGAGAAGGAGATTTCAAGTTTCTAACCACAAACAACCCAAACCAATCTCATCACCATGATAATAACCATTACAACAACCTCGACATTTTGTCACCCACAC
RE_139 ----------------------------------------------------------------------------------------------------
710 720 730 740 750 760 770 780 790 800
AT3G13 CAACTATAAACAATCATCATCAACCTTCACTTTCTTCTTGTCCTCATGATAATAATCTCCAATGGCCAGCGTTACCAGATTTCCCAGCGAGTACCATTTC
::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_139 ------------ATCATCATCAACCCTCACTTTCTTCTTGTCCTCATGATAATAATCTCCAATGGCCAGCGTTACCAGATTTCCCAGCGAGTACCATTTC
380 390 400 410 420 430 440 450
810 820 830 840 850 860 870 880 890 900
AT3G13 TGGTTTCCAAGAAACCCTTCAAGATTATGATGATGCTAATAAACTCAACGTGTTTGTGACACCATTCAACGATAATGCCAAAAAGTTATTATGTGGAGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_139 TGGTTTCCAAGAAACCCTTCAAGATTATGATGATGCTAATAAACTCAACGTGTTTGTGACACCATTCAACGATAATGCCAAAAAGTTATTATGTGGAGAA
460 470 480 490 500 510 520 530 540 550
910 920 930 940 950 960 970 980 990 1000
AT3G13 GTTCTCGAAGGCAAAGTACTATCTTCCTCCTCACCAATTTCACAAGATCACGGCCTTTTTCTTCCCACCACGTACAACTTTCAAATGACTTCTACGAGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::
RE_139 GTTCTCGAAGGCAAAGTACTATCTTCCTCCTCACCAATTTCACAAGATCACGGCCTTTTTCTTCCCACCACGTACAATTTTCAAATGACTTCTACGAGTG
560 570 580 590 600 610 620 630 640 650
1010 1020 1030 1040 1050 1060 1070 1080 1090 1100
AT3G13 ATCATCAACATCATCATCGAGTGGACTCATACATCAATCACATGATCATACCATCATCATCCTCATCGTCGCCAATCTCTTGTGGACAGTACGTCATAAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_139 ATCATCAACATCATCATCGAGTGGACTCATACATCAATCACATGATCATACCATCATCATCCTCATCGTCGCCAATCTCTTGTGGACAGTACGTCATAAC
660 670 680 690 700 710 720 730 740 750
AT3G13 T
:
RE_139 T
10 20 30 40 50 60 70 80
AT3G13 MGHHSCCNKQKVKRGLWSPEED------EKLINYINSYGHGC------WSSVPKHAGTYTHIHGFCL--QRCGKSCRLRWINYLRPDLKRGSFSPQEAAL
: : . .:. ... : : : : : : .:: . : ::: :
IE_005 ----------------MSRERERFEEIGKKIKREADAWPHQMAGIRRPMSGPPGTLNTITPCAACKLLRRRCAQECPF-----------SPYFSPHEPHK
10 20 30 40 50 60 70
90 100 110 120 130 140
AT3G13 IIELHSILGNRWAQIAKHLPGRTDNEVKNFWNS-----------------------------------SIKKKLMSHHHHGHHHHHLSSMASLLTNLP--
.: . : . ..: : ... . :: ... ... . ..:.:. .:
IE_005 FASVHKVFGA--SNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQR-------EAVATLI--VPSN
80 90 100 110 120 130 140 150 160
150 160 170 180 190 200 210 220 230 240
AT3G13 -----YHNGFNPTTVDDESSRFMSNIITNTNPNFITPSHLSLPSPHVMTPLMFPTSREGDFKFLTTNNPNQSHHHDNNHYNNLDILSPTPTINNHHQPSL
.:: . . : : : : .: :: : . ::.:. .. . . .::..
IE_005 SQVAGFHNSGGVSVIAPPPQR-------PTTPPQPTTAHPPSPSSCVFSQ---PTTRDLEYGNIES---------ENNYFG-------------------
170 180 190 200 210 220
250 260 270 280 290 300 310 320 330 340
AT3G13 SSCPHDNNLQWPALPDFPASTISGFQETLQDYDDANKLNVFVTPFNDNAKKLLCGEVLEGKVLSSSSPISQDHGLFLPTTYNFQMTSTSDHQHHHRVDSY
IE_005 ----------------------------------------------------------------------------------------------------
350 360
AT3G13 INHMIIPSSSSSSPISCGQYVIT
IE_005 -----------------------
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