◆◆◆RE_1395 detail◆◆◆

Code name	RE_1395
Locus	AT3G13890
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列70.70%一致
comment	0115_アミノ酸配列70%以上一致 with AT3G13890.2_by_RIKE読まれた配列に有N
sequence	>RE_1395_759bp ATGGGTCATCACTCATGCTGCAACAAGCAAAAGGTGAAGAGAGGGCTTTGGTCACCTGAAGAAGACGAAAAGCTCATCAACTACATCAATTCATATGGCC ATGGATGTTGGAGCTCTGTTCCTAAACATGCAGGTTTGCAGAGATGTGGAAAGAGTTGTAGATTAAGATGGATAAATTATCTAAGACCTGATCTTAAACG TGGAAGCTTCTCTCCTCAAGAAGCTGCTCTTATCATTGAGCTTCACAGCATTCTTGGTAACAGATGGGCTCAAATTGCTAAACATCTACCTGGAAGAACA GATAACGAGGTCAAGAATTTCTGGAACTCGAGCATTAAAAAGAAGCTCATGTCTCACCATCATCACGGTCATCATCATCAACCCTCACTTTCTTCTTGTC CTCATGATAATAATCTCCAATGGCCAGCGTTACCAGATTTCCCAGCGAGTACCATTTCTGGTTTCCAAGAAACCCTTCAAGATTATGATGATGCTAATAA ACTCAACGTGTTTGTGACACCATTCAACGATAATGCCAAAAAGTTATTATGTGGAGAAGTTCTCGAAGGCAAAGTACTATCTTCCTCCTCACCAATTTCA CAAGATCACGGCCTTTTTCTTCCCACCACGTACAATTTTCAAATGACTTCTACGAGTGATCATCAACATCATCATCGAGTGGACTCATACATCAATCACA TGATCATACCATCATCATCCTCATCGTCGCCAATCTCTTGTGGACAGTACGTCATAACT >RE_1395_translated MGHHSCCNKQKVKRGLWSPEEDEKLINYINSYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRT DNEVKNFWNSSIKKKLMSHHHHGHHHQPSLSSCPHDNNLQWPALPDFPASTISGFQETLQDYDDANKLNVFVTPFNDNAKKLLCGEVLEGKVLSSSSPIS QDHGLFLPTTYNFQMTSTSDHQHHHRVDSYINHMIIPSSSSSSPISCGQYVIT
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 757/1101 (68.8%)（アミノ酸配列で253/367 (68.9%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT3G13 ATGGGTCATCACTCATGCTGCAACAAGCAAAAGGTGAAGAGAGGGCTTTGGTCACCTGAAGAAGACGAAAAGCTCATCAACTACATCAATTCATATGGCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 ATGGGTCATCACTCATGCTGCAACAAGCAAAAGGTGAAGAGAGGGCTTTGGTCACCTGAAGAAGACGAAAAGCTCATCAACTACATCAATTCATATGGCC 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G13 ATGGATGTTGGAGCTCTGTTCCTAAACATGCAGGCACTTATACACATATACATGGGTTTTGTTTGCAGAGATGTGGAAAGAGTTGTAGATTAAGATGGAT ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::: RE_139 ATGGATGTTGGAGCTCTGTTCCTAAACATGCAG---------------------------GTTTGCAGAGATGTGGAAAGAGTTGTAGATTAAGATGGAT 110 120 130 140 150 160 170 210 220 230 240 250 260 270 280 290 300 AT3G13 AAATTATCTAAGACCTGATCTTAAACGTGGAAGCTTCTCTCCTCAAGAAGCTGCTCTTATCATTGAGCTTCACAGCATTCTTGGTAACAGATGGGCTCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 AAATTATCTAAGACCTGATCTTAAACGTGGAAGCTTCTCTCCTCAAGAAGCTGCTCTTATCATTGAGCTTCACAGCATTCTTGGTAACAGATGGGCTCAA 180 190 200 210 220 230 240 250 260 270 310 320 330 340 350 360 370 380 390 400 AT3G13 ATTGCTAAACATCTACCTGGAAGAACAGATAACGAGGTCAAGAATTTCTGGAACTCGAGCATTAAAAAGAAGCTCATGTCTCACCATCATCACGGTCATC ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 ATTGCTAAACATCTACCTGGAAGAACAGATAACGAGGTCAAGAATTTCTGGAACTCGAGCATTAAAAAGAAGCTCATGTCTCACCATCATCACGGTC--- 280 290 300 310 320 330 340 350 360 370 410 420 430 440 450 460 470 480 490 500 AT3G13 ATCATCATCATCTCTCTTCCATGGCGAGTTTGCTCACAAACCTTCCTTATCACAATGGATTCAACCCTACTACAGTCGACGATGAAAGTTCAAGATTCAT RE_139 ---------------------------------------------------------------------------------------------------- 510 520 530 540 550 560 570 580 590 600 AT3G13 GTCCAATATCATCACAAACACTAACCCTAATTTCATCACTCCAAGCCATCTCTCTCTTCCTTCTCCTCATGTTATGACCCCATTGATGTTCCCAACCTCT RE_139 ---------------------------------------------------------------------------------------------------- 610 620 630 640 650 660 670 680 690 700 AT3G13 AGAGAAGGAGATTTCAAGTTTCTAACCACAAACAACCCAAACCAATCTCATCACCATGATAATAACCATTACAACAACCTCGACATTTTGTCACCCACAC RE_139 ---------------------------------------------------------------------------------------------------- 710 720 730 740 750 760 770 780 790 800 AT3G13 CAACTATAAACAATCATCATCAACCTTCACTTTCTTCTTGTCCTCATGATAATAATCTCCAATGGCCAGCGTTACCAGATTTCCCAGCGAGTACCATTTC ::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 ------------ATCATCATCAACCCTCACTTTCTTCTTGTCCTCATGATAATAATCTCCAATGGCCAGCGTTACCAGATTTCCCAGCGAGTACCATTTC 380 390 400 410 420 430 440 450 810 820 830 840 850 860 870 880 890 900 AT3G13 TGGTTTCCAAGAAACCCTTCAAGATTATGATGATGCTAATAAACTCAACGTGTTTGTGACACCATTCAACGATAATGCCAAAAAGTTATTATGTGGAGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 TGGTTTCCAAGAAACCCTTCAAGATTATGATGATGCTAATAAACTCAACGTGTTTGTGACACCATTCAACGATAATGCCAAAAAGTTATTATGTGGAGAA 460 470 480 490 500 510 520 530 540 550 910 920 930 940 950 960 970 980 990 1000 AT3G13 GTTCTCGAAGGCAAAGTACTATCTTCCTCCTCACCAATTTCACAAGATCACGGCCTTTTTCTTCCCACCACGTACAACTTTCAAATGACTTCTACGAGTG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::: RE_139 GTTCTCGAAGGCAAAGTACTATCTTCCTCCTCACCAATTTCACAAGATCACGGCCTTTTTCTTCCCACCACGTACAATTTTCAAATGACTTCTACGAGTG 560 570 580 590 600 610 620 630 640 650 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT3G13 ATCATCAACATCATCATCGAGTGGACTCATACATCAATCACATGATCATACCATCATCATCCTCATCGTCGCCAATCTCTTGTGGACAGTACGTCATAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 ATCATCAACATCATCATCGAGTGGACTCATACATCAATCACATGATCATACCATCATCATCCTCATCGTCGCCAATCTCTTGTGGACAGTACGTCATAAC 660 670 680 690 700 710 720 730 740 750 AT3G13 T : RE_139 T 10 20 30 40 50 60 70 80 90 100 AT3G13 MGHHSCCNKQKVKRGLWSPEEDEKLINYINSYGHGCWSSVPKHAGTYTHIHGFCLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQ ::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::: RE_139 MGHHSCCNKQKVKRGLWSPEEDEKLINYINSYGHGCWSSVPKHAG---------LQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQ 10 20 30 40 50 60 70 80 90 110 120 130 140 150 160 170 180 190 200 AT3G13 IAKHLPGRTDNEVKNFWNSSIKKKLMSHHHHGHHHHHLSSMASLLTNLPYHNGFNPTTVDDESSRFMSNIITNTNPNFITPSHLSLPSPHVMTPLMFPTS ::::::::::::::::::::::::::::::::: RE_139 IAKHLPGRTDNEVKNFWNSSIKKKLMSHHHHGH------------------------------------------------------------------- 100 110 120 210 220 230 240 250 260 270 280 290 300 AT3G13 REGDFKFLTTNNPNQSHHHDNNHYNNLDILSPTPTINNHHQPSLSSCPHDNNLQWPALPDFPASTISGFQETLQDYDDANKLNVFVTPFNDNAKKLLCGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 --------------------------------------HHQPSLSSCPHDNNLQWPALPDFPASTISGFQETLQDYDDANKLNVFVTPFNDNAKKLLCGE 130 140 150 160 170 180 310 320 330 340 350 360 AT3G13 VLEGKVLSSSSPISQDHGLFLPTTYNFQMTSTSDHQHHHRVDSYINHMIIPSSSSSSPISCGQYVIT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_139 VLEGKVLSSSSPISQDHGLFLPTTYNFQMTSTSDHQHHHRVDSYINHMIIPSSSSSSPISCGQYVIT 190 200 210 220 230 240 250

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