◆◆◆RE_1395 detail◆◆◆

Code name	RE_1395
Locus	AT3G13890
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列70.70%一致
comment	0115_アミノ酸配列70%以上一致 with AT3G13890.2_by_RIKE読まれた配列に有N
sequence	>RE_1395_759bp ATGGGTCATCACTCATGCTGCAACAAGCAAAAGGTGAAGAGAGGGCTTTGGTCACCTGAAGAAGACGAAAAGCTCATCAACTACATCAATTCATATGGCC ATGGATGTTGGAGCTCTGTTCCTAAACATGCAGGTTTGCAGAGATGTGGAAAGAGTTGTAGATTAAGATGGATAAATTATCTAAGACCTGATCTTAAACG TGGAAGCTTCTCTCCTCAAGAAGCTGCTCTTATCATTGAGCTTCACAGCATTCTTGGTAACAGATGGGCTCAAATTGCTAAACATCTACCTGGAAGAACA GATAACGAGGTCAAGAATTTCTGGAACTCGAGCATTAAAAAGAAGCTCATGTCTCACCATCATCACGGTCATCATCATCAACCCTCACTTTCTTCTTGTC CTCATGATAATAATCTCCAATGGCCAGCGTTACCAGATTTCCCAGCGAGTACCATTTCTGGTTTCCAAGAAACCCTTCAAGATTATGATGATGCTAATAA ACTCAACGTGTTTGTGACACCATTCAACGATAATGCCAAAAAGTTATTATGTGGAGAAGTTCTCGAAGGCAAAGTACTATCTTCCTCCTCACCAATTTCA CAAGATCACGGCCTTTTTCTTCCCACCACGTACAATTTTCAAATGACTTCTACGAGTGATCATCAACATCATCATCGAGTGGACTCATACATCAATCACA TGATCATACCATCATCATCCTCATCGTCGCCAATCTCTTGTGGACAGTACGTCATAACT >RE_1395_translated MGHHSCCNKQKVKRGLWSPEEDEKLINYINSYGHGCWSSVPKHAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRT DNEVKNFWNSSIKKKLMSHHHHGHHHQPSLSSCPHDNNLQWPALPDFPASTISGFQETLQDYDDANKLNVFVTPFNDNAKKLLCGEVLEGKVLSSSSPIS QDHGLFLPTTYNFQMTSTSDHQHHHRVDSYINHMIIPSSSSSSPISCGQYVIT
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 969/969 (100.0%)（アミノ酸配列で323/323 (100.0%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT3G06 ATGGATGAAAAAGGAAGAAGCTTGAAGAACAACAACATGGAAGACGAGATGGACCTAAAGAGAGGTCCGTGGACTGCTGAAGAAGATTTTAAGCTCATGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 ATGGATGAAAAAGGAAGAAGCTTGAAGAACAACAACATGGAAGACGAGATGGACCTAAAGAGAGGTCCGTGGACTGCTGAAGAAGATTTTAAGCTCATGA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G06 ATTACATTGCTACTAATGGAGAAGGTCGCTGGAACTCTCTTTCTCGTTGCGCCGGCCTCCAACGCACCGGTAAAAGCTGTAGACTAAGGTGGTTAAACTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 ATTACATTGCTACTAATGGAGAAGGTCGCTGGAACTCTCTTTCTCGTTGCGCCGGCCTCCAACGCACCGGTAAAAGCTGTAGACTAAGGTGGTTAAACTA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G06 TCTCCGCCCTGACGTCCGCCGTGGAAACATTACACTTGAAGAACAACTCTTGATCCTCGAACTTCATTCCCGTTGGGGAAATAGATGGTCAAAAATCGCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 TCTCCGCCCTGACGTCCGCCGTGGAAACATTACACTTGAAGAACAACTCTTGATCCTCGAACTTCATTCCCGTTGGGGAAATAGATGGTCAAAAATCGCA 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G06 CAATATTTACCGGGAAGAACGGACAACGAGATCAAGAACTACTGGAGGACGCGGGTGCAAAAGCATGCGAAACAGTTGAAATGTGATGTGAATAGCCAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 CAATATTTACCGGGAAGAACGGACAACGAGATCAAGAACTACTGGAGGACGCGGGTGCAAAAGCATGCGAAACAGTTGAAATGTGATGTGAATAGCCAAC 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT3G06 AATTCAAAGACACAATGAAGTACTTGTGGATGCCTCGACTAGTCGAGAGGATTCAGTCAGCCTCGGCCTCATCCGCAGCAGCAGCCACCACCACAACCAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 AATTCAAAGACACAATGAAGTACTTGTGGATGCCTCGACTAGTCGAGAGGATTCAGTCAGCCTCGGCCTCATCCGCAGCAGCAGCCACCACCACAACCAC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT3G06 CACCACCACAGGATCAGCCGGCACGTCATCTTGCATCACAACCTCTAACAATCAATTCATGAATTACGACTACAACAACAACAACATGGGACAACAGTTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 CACCACCACAGGATCAGCCGGCACGTCATCTTGCATCACAACCTCTAACAATCAATTCATGAATTACGACTACAACAACAACAACATGGGACAACAGTTT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT3G06 GGTGTAATGAGCAACAATGATTATATCACGCCTGAAAATTCCAGCGTGGCAGTGTCTCCGGCGTCAGACTTAACGGAGTACTACAGCGCTCCAAACCCTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 GGTGTAATGAGCAACAATGATTATATCACGCCTGAAAATTCCAGCGTGGCAGTGTCTCCGGCGTCAGACTTAACGGAGTACTACAGCGCTCCAAACCCTA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT3G06 ACCCGGAATACTATTCGGGTCAAATGGGGAATAGTTATTATCCAGATCAGAATTTAGTGAGTTCACAATTATTACCGGATAATTATTTCGACTATAGTGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 ACCCGGAATACTATTCGGGTCAAATGGGGAATAGTTATTATCCAGATCAGAATTTAGTGAGTTCACAATTATTACCGGATAATTATTTCGACTATAGTGG 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT3G06 ATTATTAGACGAAGATCTAACGGCTATGCAAGAGCAGAGTAACCTCAGCTGGTTTGAAAACATTAATGGTGCTGCTTCTTCTTCAGACAGTTTATGGAAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 ATTATTAGACGAAGATCTAACGGCTATGCAAGAGCAGAGTAACCTCAGCTGGTTTGAAAACATTAATGGTGCTGCTTCTTCTTCAGACAGTTTATGGAAC 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 AT3G06 ATTGGAGAAACTGATGAAGAATTCTGGTTCTTACAGCAGCAACAACAGTTCAACAATAATGGTAGCTTC ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 ATTGGAGAAACTGATGAAGAATTCTGGTTCTTACAGCAGCAACAACAGTTCAACAATAATGGTAGCTTC 910 920 930 940 950 960 10 20 30 40 50 60 70 80 90 100 AT3G06 MDEKGRSLKNNNMEDEMDLKRGPWTAEEDFKLMNYIATNGEGRWNSLSRCAGLQRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 MDEKGRSLKNNNMEDEMDLKRGPWTAEEDFKLMNYIATNGEGRWNSLSRCAGLQRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIA 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G06 QYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSQQFKDTMKYLWMPRLVERIQSASASSAAAATTTTTTTTGSAGTSSCITTSNNQFMNYDYNNNNMGQQF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 QYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSQQFKDTMKYLWMPRLVERIQSASASSAAAATTTTTTTTGSAGTSSCITTSNNQFMNYDYNNNNMGQQF 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G06 GVMSNNDYITPENSSVAVSPASDLTEYYSAPNPNPEYYSGQMGNSYYPDQNLVSSQLLPDNYFDYSGLLDEDLTAMQEQSNLSWFENINGAASSSDSLWN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_138 GVMSNNDYITPENSSVAVSPASDLTEYYSAPNPNPEYYSGQMGNSYYPDQNLVSSQLLPDNYFDYSGLLDEDLTAMQEQSNLSWFENINGAASSSDSLWN 210 220 230 240 250 260 270 280 290 300 310 320 AT3G06 IGETDEEFWFLQQQQQFNNNGSF ::::::::::::::::::::::: RE_138 IGETDEEFWFLQQQQQFNNNGSF 310 320

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