◆◆◆RE_1414 detail◆◆◆

Code nameRE_1414
LocusAT3G55730
Forward primer
Reverse primer
Alignment with TAIR7CDSアミノ酸配列99.20%一致
comment0422_アミノ酸配列70%以上一致
sequence
>RE_1414_1197bp
ATGGAAGGAGAAACTCATCAATCGGAGCCGTTACCTTTAGCATCTGGAGATTCCGATGAAGGGATCAGTGCTGCGATTGAGGCGGAGCTTGCTGAGTTAG
CTGCTGGAGATTCAAGCGGCGGTGGTGGTTGCGGCGGCGGAGGAGGAGGGATTAGGAGTAAAGTCAAAGGACCTTGGTCTACGGAGGAAGACGCGGTTCT
TACGAAGCTTGTGAGGAAACTAGGACCGAGGAATTGGAGTTTGATCGCTCGTGGAATCCCTGGTCGTTCTGGTAAATCTTGTCGATTGCGTTGGTGTAAT
CAGCTTGACCCTTGTCTCAAGCGTAAACCTTTCTCTGATGAGGAAGATCGTATGATAATTTCTGCTCACGCGGTTCACGGAAACAAATGGGCAGTGATTG
CGAAACTGTTAACTGGAAGAACAGATAACGCTATCAAGAACCATTGGAACTCAACTCTTAGACGTAAATACGCAGATCTATGGAATAATGGTCAATGGAT
GGCTAATTCAGTTACTACCGCTTCCGTCAAAAACGAAAATGTCGATGAAACAACTAATCCTCCATCCTCAAAACAACAGTTGCCTCAAGGAGATATCAAT
TCCTCCCCGCCAAAGCCTCCACAAGTGAGTGATGTTGTAATGGAAGAGGCAGCTAATGAACCTCAAGAACCTCGAGAACAACAAGAACAAGCTCCACCGG
TAGTGAGTAACGTTCCAACAGAAAATAACGTGTTTCGCCCCGTGGCTCGCGTTGGTGCATCCAGTATCTATAACCCAACCAGCCAGAAAAATGGTTACAG
AGACTACAATATAGTTCCATGTGAGGGACCGTTGATTCAAGCAGCTAAACCCGATTCATTGGCTGGTAAATTTCTACAATCTCTTTGTGATGAACCTCAA
ATCCCGTCAAAATGTGGTCACGGCTGCTCTACTCTTCCAGCTGAAACTAAGTTCCCACGTAACTCGGTGTTGGGACCTGAGTTTGTGGATTATGAAGAGC
CTTCTGCGGTTTTCAACCAAGAACTAATATCTATAGCAACCGATTTGAACAACATTGCATGGATAAAGAGTGGCCTTGACAATGCCGTTGTCAGAGAAGC
AGAACAGAGTTTGAAGATGGATAATTACAATTATAATGATCCTCGAATCAAGTTTACTGGAATGATGCCTAGACAAGATTTCTTCTGTGCAAGAAGC

>RE_1414_translated
MEGETHQSEPLPLASGDSDEGISAAIEAELAELAAGDSSGGGGCGGGGGGIRSKVKGPWSTEEDAVLTKLVRKLGPRNWSLIARGIPGRSGKSCRLRWCN
QLDPCLKRKPFSDEEDRMIISAHAVHGNKWAVIAKLLTGRTDNAIKNHWNSTLRRKYADLWNNGQWMANSVTTASVKNENVDETTNPPSSKQQLPQGDIN
SSPPKPPQVSDVVMEEAANEPQEPREQQEQAPPVVSNVPTENNVFRPVARVGASSIYNPTSQKNGYRDYNIVPCEGPLIQAAKPDSLAGKFLQSLCDEPQ
IPSKCGHGCSTLPAETKFPRNSVLGPEFVDYEEPSAVFNQELISIATDLNNIAWIKSGLDNAVVREAEQSLKMDNYNYNDPRIKFTGMMPRQDFFCARS
Alignment CDS(TAIRver.9)_without_stop_codonとのalignment

1193/1197 (99.7%)(アミノ酸配列で396/399 (99.2%))一致しました。


               10        20        30        40        50        60        70        80        90       100
AT3G55 ATGGAAGGAGAAACTCATCAATCGGAGCCGTTACCTTTAGCATCTGGAGATTCCGATGAAGGGATCAGTGCTGCGATTGAGGCGGAGCTTGCTGAGTTAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_141 ATGGAAGGAGAAACTCATCAATCGGAGCCGTTACCTTTAGCATCTGGAGATTCCGATGAAGGGATCAGTGCTGCGATTGAGGCGGAGCTTGCTGAGTTAG
               10        20        30        40        50        60        70        80        90       100

              110       120       130       140       150       160       170       180       190       200
AT3G55 CTGCTGGAGATTCAAGCGGCGGTGGTGGTTGCGGCGGCGGAGGAGGAGGGATTAGGAGTAAAGTCAAAGGACCTTGGTCTACGGAGGAAGACGCGGTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_141 CTGCTGGAGATTCAAGCGGCGGTGGTGGTTGCGGCGGCGGAGGAGGAGGGATTAGGAGTAAAGTCAAAGGACCTTGGTCTACGGAGGAAGACGCGGTTCT
              110       120       130       140       150       160       170       180       190       200

              210       220       230       240       250       260       270       280       290       300
AT3G55 TACGAAGCTTGTGAGGAAACTAGGACCGAGGAATTGGAGTTTGATCGCTCGTGGAATCCCTGGTCGTTCTGGTAAATCTTGTCGATTGCGTTGGTGTAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_141 TACGAAGCTTGTGAGGAAACTAGGACCGAGGAATTGGAGTTTGATCGCTCGTGGAATCCCTGGTCGTTCTGGTAAATCTTGTCGATTGCGTTGGTGTAAT
              210       220       230       240       250       260       270       280       290       300

              310       320       330       340       350       360       370       380       390       400
AT3G55 CAGCTTGACCCTTGTCTCAAGCGTAAACCTTTCTCTGATGAGGAAGATCGTATGATAATTTCTGCTCACGCGGTTCACGGAAACAAATGGGCAGTGATTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_141 CAGCTTGACCCTTGTCTCAAGCGTAAACCTTTCTCTGATGAGGAAGATCGTATGATAATTTCTGCTCACGCGGTTCACGGAAACAAATGGGCAGTGATTG
              310       320       330       340       350       360       370       380       390       400

              410       420       430       440       450       460       470       480       490       500
AT3G55 CGAAACTGTTAACTGGAAGAACAGATAACGCTATCAAGAACCATTGGAACTCAACTCTTAGACGTAAATACGCAGATCTATGGAATAATGGTCAATGGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_141 CGAAACTGTTAACTGGAAGAACAGATAACGCTATCAAGAACCATTGGAACTCAACTCTTAGACGTAAATACGCAGATCTATGGAATAATGGTCAATGGAT
              410       420       430       440       450       460       470       480       490       500

              510       520       530       540       550       560       570       580       590       600
AT3G55 GGCTAATTCAGTTACTACCGCTTCCGTCAAAAACGAAAATGTCGATGAAACAACTAATCCTCCATCCTCAAAACAACAGTTGCCTCAAGGAGATATCAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_141 GGCTAATTCAGTTACTACCGCTTCCGTCAAAAACGAAAATGTCGATGAAACAACTAATCCTCCATCCTCAAAACAACAGTTGCCTCAAGGAGATATCAAT
              510       520       530       540       550       560       570       580       590       600

              610       620       630       640       650       660       670       680       690       700
AT3G55 TCCTCCCCGCCAAAGCCTCCACAAGTGAGTGATGTTGTAATGGAAGAGGCAGCTAATGAACCTCAAGAACCTCAAGAACAACAAGAACAAGCTCCACCGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::
RE_141 TCCTCCCCGCCAAAGCCTCCACAAGTGAGTGATGTTGTAATGGAAGAGGCAGCTAATGAACCTCAAGAACCTCGAGAACAACAAGAACAAGCTCCACCGG
              610       620       630       640       650       660       670       680       690       700

              710       720       730       740       750       760       770       780       790       800
AT3G55 TAGTGAGTAACGTTCCAACAGAAAATAACGTGTTTCGCCCCGTGGCTCGCGTTGGTGCATTCAGTATCTATAACCCAACCAGCCAGAAAAATGGTTACAG
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
RE_141 TAGTGAGTAACGTTCCAACAGAAAATAACGTGTTTCGCCCCGTGGCTCGCGTTGGTGCATCCAGTATCTATAACCCAACCAGCCAGAAAAATGGTTACAG
              710       720       730       740       750       760       770       780       790       800

              810       820       830       840       850       860       870       880       890       900
AT3G55 AGACTACAATATAGTTCCATGTGAGGGACCGTTGATTCAAGCAGCTAAACCCGATTCATTGGCTGGTAAATTTCTACAATCTCTTTGTGATGAACCTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_141 AGACTACAATATAGTTCCATGTGAGGGACCGTTGATTCAAGCAGCTAAACCCGATTCATTGGCTGGTAAATTTCTACAATCTCTTTGTGATGAACCTCAA
              810       820       830       840       850       860       870       880       890       900

              910       920       930       940       950       960       970       980       990      1000
AT3G55 ATCCCGTCAAAATGTGGTCACGGCTGCTCTACTCTTCCAGCTGAAACTAAGTTCTCACGTAACTCGGTGTTGGGACCTGAGTTTGTGGATTATGAAGAGC
       :::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
RE_141 ATCCCGTCAAAATGTGGTCACGGCTGCTCTACTCTTCCAGCTGAAACTAAGTTCCCACGTAACTCGGTGTTGGGACCTGAGTTTGTGGATTATGAAGAGC
              910       920       930       940       950       960       970       980       990      1000

             1010      1020      1030      1040      1050      1060      1070      1080      1090      1100
AT3G55 CTTCTGCGGTTTTCAACCAAGAACTAATATCTATAGCAACCGATTTGAACAACATTGCATGGATAAAGAGTGGCCTTGACAATGCTGTTGTCAGAGAAGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
RE_141 CTTCTGCGGTTTTCAACCAAGAACTAATATCTATAGCAACCGATTTGAACAACATTGCATGGATAAAGAGTGGCCTTGACAATGCCGTTGTCAGAGAAGC
             1010      1020      1030      1040      1050      1060      1070      1080      1090      1100

             1110      1120      1130      1140      1150      1160      1170      1180      1190       
AT3G55 AGAACAGAGTTTGAAGATGGATAATTACAATTATAATGATCCTCGAATCAAGTTTACTGGAATGATGCCTAGACAAGATTTCTTCTGTGCAAGAAGC
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_141 AGAACAGAGTTTGAAGATGGATAATTACAATTATAATGATCCTCGAATCAAGTTTACTGGAATGATGCCTAGACAAGATTTCTTCTGTGCAAGAAGC
             1110      1120      1130      1140      1150      1160      1170      1180      1190       



               10        20        30        40        50        60        70        80        90       100
AT3G55 MEGETHQSEPLPLASGDSDEGISAAIEAELAELAAGDSSGGGGCGGGGGGIRSKVKGPWSTEEDAVLTKLVRKLGPRNWSLIARGIPGRSGKSCRLRWCN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_141 MEGETHQSEPLPLASGDSDEGISAAIEAELAELAAGDSSGGGGCGGGGGGIRSKVKGPWSTEEDAVLTKLVRKLGPRNWSLIARGIPGRSGKSCRLRWCN
               10        20        30        40        50        60        70        80        90       100

              110       120       130       140       150       160       170       180       190       200
AT3G55 QLDPCLKRKPFSDEEDRMIISAHAVHGNKWAVIAKLLTGRTDNAIKNHWNSTLRRKYADLWNNGQWMANSVTTASVKNENVDETTNPPSSKQQLPQGDIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_141 QLDPCLKRKPFSDEEDRMIISAHAVHGNKWAVIAKLLTGRTDNAIKNHWNSTLRRKYADLWNNGQWMANSVTTASVKNENVDETTNPPSSKQQLPQGDIN
              110       120       130       140       150       160       170       180       190       200

              210       220       230       240       250       260       270       280       290       300
AT3G55 SSPPKPPQVSDVVMEEAANEPQEPQEQQEQAPPVVSNVPTENNVFRPVARVGAFSIYNPTSQKNGYRDYNIVPCEGPLIQAAKPDSLAGKFLQSLCDEPQ
       ::::::::::::::::::::::::.:::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::
RE_141 SSPPKPPQVSDVVMEEAANEPQEPREQQEQAPPVVSNVPTENNVFRPVARVGASSIYNPTSQKNGYRDYNIVPCEGPLIQAAKPDSLAGKFLQSLCDEPQ
              210       220       230       240       250       260       270       280       290       300

              310       320       330       340       350       360       370       380       390         
AT3G55 IPSKCGHGCSTLPAETKFSRNSVLGPEFVDYEEPSAVFNQELISIATDLNNIAWIKSGLDNAVVREAEQSLKMDNYNYNDPRIKFTGMMPRQDFFCARS
       :::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_141 IPSKCGHGCSTLPAETKFPRNSVLGPEFVDYEEPSAVFNQELISIATDLNNIAWIKSGLDNAVVREAEQSLKMDNYNYNDPRIKFTGMMPRQDFFCARS
              310       320       330       340       350       360       370       380       390         


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