Code name | RE_1414 | |||
---|---|---|---|---|
Locus | AT3G55730 | |||
Forward primer | ||||
Reverse primer | ||||
Alignment with TAIR7CDS | アミノ酸配列99.20%一致 | |||
comment | 0422_アミノ酸配列70%以上一致 | |||
sequence |
>RE_1414_1197bp ATGGAAGGAGAAACTCATCAATCGGAGCCGTTACCTTTAGCATCTGGAGATTCCGATGAAGGGATCAGTGCTGCGATTGAGGCGGAGCTTGCTGAGTTAG CTGCTGGAGATTCAAGCGGCGGTGGTGGTTGCGGCGGCGGAGGAGGAGGGATTAGGAGTAAAGTCAAAGGACCTTGGTCTACGGAGGAAGACGCGGTTCT TACGAAGCTTGTGAGGAAACTAGGACCGAGGAATTGGAGTTTGATCGCTCGTGGAATCCCTGGTCGTTCTGGTAAATCTTGTCGATTGCGTTGGTGTAAT CAGCTTGACCCTTGTCTCAAGCGTAAACCTTTCTCTGATGAGGAAGATCGTATGATAATTTCTGCTCACGCGGTTCACGGAAACAAATGGGCAGTGATTG CGAAACTGTTAACTGGAAGAACAGATAACGCTATCAAGAACCATTGGAACTCAACTCTTAGACGTAAATACGCAGATCTATGGAATAATGGTCAATGGAT GGCTAATTCAGTTACTACCGCTTCCGTCAAAAACGAAAATGTCGATGAAACAACTAATCCTCCATCCTCAAAACAACAGTTGCCTCAAGGAGATATCAAT TCCTCCCCGCCAAAGCCTCCACAAGTGAGTGATGTTGTAATGGAAGAGGCAGCTAATGAACCTCAAGAACCTCGAGAACAACAAGAACAAGCTCCACCGG TAGTGAGTAACGTTCCAACAGAAAATAACGTGTTTCGCCCCGTGGCTCGCGTTGGTGCATCCAGTATCTATAACCCAACCAGCCAGAAAAATGGTTACAG AGACTACAATATAGTTCCATGTGAGGGACCGTTGATTCAAGCAGCTAAACCCGATTCATTGGCTGGTAAATTTCTACAATCTCTTTGTGATGAACCTCAA ATCCCGTCAAAATGTGGTCACGGCTGCTCTACTCTTCCAGCTGAAACTAAGTTCCCACGTAACTCGGTGTTGGGACCTGAGTTTGTGGATTATGAAGAGC CTTCTGCGGTTTTCAACCAAGAACTAATATCTATAGCAACCGATTTGAACAACATTGCATGGATAAAGAGTGGCCTTGACAATGCCGTTGTCAGAGAAGC AGAACAGAGTTTGAAGATGGATAATTACAATTATAATGATCCTCGAATCAAGTTTACTGGAATGATGCCTAGACAAGATTTCTTCTGTGCAAGAAGC >RE_1414_translated MEGETHQSEPLPLASGDSDEGISAAIEAELAELAAGDSSGGGGCGGGGGGIRSKVKGPWSTEEDAVLTKLVRKLGPRNWSLIARGIPGRSGKSCRLRWCN QLDPCLKRKPFSDEEDRMIISAHAVHGNKWAVIAKLLTGRTDNAIKNHWNSTLRRKYADLWNNGQWMANSVTTASVKNENVDETTNPPSSKQQLPQGDIN SSPPKPPQVSDVVMEEAANEPQEPREQQEQAPPVVSNVPTENNVFRPVARVGASSIYNPTSQKNGYRDYNIVPCEGPLIQAAKPDSLAGKFLQSLCDEPQ IPSKCGHGCSTLPAETKFPRNSVLGPEFVDYEEPSAVFNQELISIATDLNNIAWIKSGLDNAVVREAEQSLKMDNYNYNDPRIKFTGMMPRQDFFCARS |
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Alignment |
◆CDS(TAIRver.9)_without_stop_codonとのalignment◆ 1193/1197 (99.7%)(アミノ酸配列で396/399 (99.2%))一致しました。 10 20 30 40 50 60 70 80 90 100 AT3G55 ATGGAAGGAGAAACTCATCAATCGGAGCCGTTACCTTTAGCATCTGGAGATTCCGATGAAGGGATCAGTGCTGCGATTGAGGCGGAGCTTGCTGAGTTAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_141 ATGGAAGGAGAAACTCATCAATCGGAGCCGTTACCTTTAGCATCTGGAGATTCCGATGAAGGGATCAGTGCTGCGATTGAGGCGGAGCTTGCTGAGTTAG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G55 CTGCTGGAGATTCAAGCGGCGGTGGTGGTTGCGGCGGCGGAGGAGGAGGGATTAGGAGTAAAGTCAAAGGACCTTGGTCTACGGAGGAAGACGCGGTTCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_141 CTGCTGGAGATTCAAGCGGCGGTGGTGGTTGCGGCGGCGGAGGAGGAGGGATTAGGAGTAAAGTCAAAGGACCTTGGTCTACGGAGGAAGACGCGGTTCT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G55 TACGAAGCTTGTGAGGAAACTAGGACCGAGGAATTGGAGTTTGATCGCTCGTGGAATCCCTGGTCGTTCTGGTAAATCTTGTCGATTGCGTTGGTGTAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_141 TACGAAGCTTGTGAGGAAACTAGGACCGAGGAATTGGAGTTTGATCGCTCGTGGAATCCCTGGTCGTTCTGGTAAATCTTGTCGATTGCGTTGGTGTAAT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT3G55 CAGCTTGACCCTTGTCTCAAGCGTAAACCTTTCTCTGATGAGGAAGATCGTATGATAATTTCTGCTCACGCGGTTCACGGAAACAAATGGGCAGTGATTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_141 CAGCTTGACCCTTGTCTCAAGCGTAAACCTTTCTCTGATGAGGAAGATCGTATGATAATTTCTGCTCACGCGGTTCACGGAAACAAATGGGCAGTGATTG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT3G55 CGAAACTGTTAACTGGAAGAACAGATAACGCTATCAAGAACCATTGGAACTCAACTCTTAGACGTAAATACGCAGATCTATGGAATAATGGTCAATGGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_141 CGAAACTGTTAACTGGAAGAACAGATAACGCTATCAAGAACCATTGGAACTCAACTCTTAGACGTAAATACGCAGATCTATGGAATAATGGTCAATGGAT 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT3G55 GGCTAATTCAGTTACTACCGCTTCCGTCAAAAACGAAAATGTCGATGAAACAACTAATCCTCCATCCTCAAAACAACAGTTGCCTCAAGGAGATATCAAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_141 GGCTAATTCAGTTACTACCGCTTCCGTCAAAAACGAAAATGTCGATGAAACAACTAATCCTCCATCCTCAAAACAACAGTTGCCTCAAGGAGATATCAAT 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT3G55 TCCTCCCCGCCAAAGCCTCCACAAGTGAGTGATGTTGTAATGGAAGAGGCAGCTAATGAACCTCAAGAACCTCAAGAACAACAAGAACAAGCTCCACCGG ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: RE_141 TCCTCCCCGCCAAAGCCTCCACAAGTGAGTGATGTTGTAATGGAAGAGGCAGCTAATGAACCTCAAGAACCTCGAGAACAACAAGAACAAGCTCCACCGG 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT3G55 TAGTGAGTAACGTTCCAACAGAAAATAACGTGTTTCGCCCCGTGGCTCGCGTTGGTGCATTCAGTATCTATAACCCAACCAGCCAGAAAAATGGTTACAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::: RE_141 TAGTGAGTAACGTTCCAACAGAAAATAACGTGTTTCGCCCCGTGGCTCGCGTTGGTGCATCCAGTATCTATAACCCAACCAGCCAGAAAAATGGTTACAG 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT3G55 AGACTACAATATAGTTCCATGTGAGGGACCGTTGATTCAAGCAGCTAAACCCGATTCATTGGCTGGTAAATTTCTACAATCTCTTTGTGATGAACCTCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_141 AGACTACAATATAGTTCCATGTGAGGGACCGTTGATTCAAGCAGCTAAACCCGATTCATTGGCTGGTAAATTTCTACAATCTCTTTGTGATGAACCTCAA 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT3G55 ATCCCGTCAAAATGTGGTCACGGCTGCTCTACTCTTCCAGCTGAAACTAAGTTCTCACGTAACTCGGTGTTGGGACCTGAGTTTGTGGATTATGAAGAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::: RE_141 ATCCCGTCAAAATGTGGTCACGGCTGCTCTACTCTTCCAGCTGAAACTAAGTTCCCACGTAACTCGGTGTTGGGACCTGAGTTTGTGGATTATGAAGAGC 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 AT3G55 CTTCTGCGGTTTTCAACCAAGAACTAATATCTATAGCAACCGATTTGAACAACATTGCATGGATAAAGAGTGGCCTTGACAATGCTGTTGTCAGAGAAGC ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::: RE_141 CTTCTGCGGTTTTCAACCAAGAACTAATATCTATAGCAACCGATTTGAACAACATTGCATGGATAAAGAGTGGCCTTGACAATGCCGTTGTCAGAGAAGC 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 AT3G55 AGAACAGAGTTTGAAGATGGATAATTACAATTATAATGATCCTCGAATCAAGTTTACTGGAATGATGCCTAGACAAGATTTCTTCTGTGCAAGAAGC ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_141 AGAACAGAGTTTGAAGATGGATAATTACAATTATAATGATCCTCGAATCAAGTTTACTGGAATGATGCCTAGACAAGATTTCTTCTGTGCAAGAAGC 1110 1120 1130 1140 1150 1160 1170 1180 1190 10 20 30 40 50 60 70 80 90 100 AT3G55 MEGETHQSEPLPLASGDSDEGISAAIEAELAELAAGDSSGGGGCGGGGGGIRSKVKGPWSTEEDAVLTKLVRKLGPRNWSLIARGIPGRSGKSCRLRWCN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_141 MEGETHQSEPLPLASGDSDEGISAAIEAELAELAAGDSSGGGGCGGGGGGIRSKVKGPWSTEEDAVLTKLVRKLGPRNWSLIARGIPGRSGKSCRLRWCN 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT3G55 QLDPCLKRKPFSDEEDRMIISAHAVHGNKWAVIAKLLTGRTDNAIKNHWNSTLRRKYADLWNNGQWMANSVTTASVKNENVDETTNPPSSKQQLPQGDIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_141 QLDPCLKRKPFSDEEDRMIISAHAVHGNKWAVIAKLLTGRTDNAIKNHWNSTLRRKYADLWNNGQWMANSVTTASVKNENVDETTNPPSSKQQLPQGDIN 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT3G55 SSPPKPPQVSDVVMEEAANEPQEPQEQQEQAPPVVSNVPTENNVFRPVARVGAFSIYNPTSQKNGYRDYNIVPCEGPLIQAAKPDSLAGKFLQSLCDEPQ ::::::::::::::::::::::::.:::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::: RE_141 SSPPKPPQVSDVVMEEAANEPQEPREQQEQAPPVVSNVPTENNVFRPVARVGASSIYNPTSQKNGYRDYNIVPCEGPLIQAAKPDSLAGKFLQSLCDEPQ 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 AT3G55 IPSKCGHGCSTLPAETKFSRNSVLGPEFVDYEEPSAVFNQELISIATDLNNIAWIKSGLDNAVVREAEQSLKMDNYNYNDPRIKFTGMMPRQDFFCARS :::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_141 IPSKCGHGCSTLPAETKFPRNSVLGPEFVDYEEPSAVFNQELISIATDLNNIAWIKSGLDNAVVREAEQSLKMDNYNYNDPRIKFTGMMPRQDFFCARS 310 320 330 340 350 360 370 380 390 |