| Code name | RE_1447 | |||
|---|---|---|---|---|
| Locus | AT5G17300 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列72.60%一致 | |||
| comment | 0420_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_1447_846bp ATGGCAACTGGAGGTGATGGGAGCTCAGTAGAGCCGATTGTAATACCTCCTCCTCGTCCCAAGAGAAAGCCAGCGCATCCGTACCCTCGTAAGTTTGGGA ACGAGGCAGATCAAACAAGTAGATCGGTTTCTCCCTCAGAACGTGATACTCAATCTCCAACCTCTGTGTTGTCCACTGTTGGATCAGAAGCATTGTGTTC CCTTGATTCGAGTTCACCCAATCGAAGCTTGTCCCCAGTTTCTTCTGCATCACCACCAGCTGCTCTTACAACCACTGCAAATGCACCTGAAGAGCTTGAG ACTCTGAAGCTGGAGTTGTTTCCTAGTGAGAGACTCTTAAACAGGGAGAGCTCGATCAAGGAACCAACGAAGCAAAGTCTTAAACTCTTTGGGAAGACAG TTTTGGTATCTGATTCAGGCATGTCCTCTTCTCTAACAACTTCAACATATTGTAAATCCCCAATTCAGCCATTACCACGGAAACTCTCATCATCCAAGAC ACTACCCATAATAAGAAACTCACAAGAAGAACTCTTGAGCTGCTGGATACAAGTCCCTCTTAAGCAAGAAGATGTGGAAAATAGATGTTTGGATTCAGGA AAGGCTGTCCAAAACGAAGGATCATCGACTGGATCAAACACTGGTTCGGTGGATGATACGGGACACACGGAAAAGACCACAGAACCCGAAACAATGCTAT GTCAATGGGAGTTTAAACCAAGTGAGAGGTCTGCATTTTCTGAGCTCAGAAGAACAAACTCCGAGTCAAATTCAAGAGGATTTGGTCCATACAAGAAGAG AAAGATGGTAACAGAAGAAGAAGAGCATGAGATTCATCTCCACTTA >RE_1447_translated MATGGDGSSVEPIVIPPPRPKRKPAHPYPRKFGNEADQTSRSVSPSERDTQSPTSVLSTVGSEALCSLDSSSPNRSLSPVSSASPPAALTTTANAPEELE TLKLELFPSERLLNRESSIKEPTKQSLKLFGKTVLVSDSGMSSSLTTSTYCKSPIQPLPRKLSSSKTLPIIRNSQEELLSCWIQVPLKQEDVENRCLDSG KAVQNEGSSTGSNTGSVDDTGHTEKTTEPETMLCQWEFKPSERSAFSELRRTNSESNSRGFGPYKKRKMVTEEEEHEIHLHL |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 844/1163 (72.6%)（アミノ酸配列で281/387 (72.6%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT5G17 ATGGCGTCGTCTCCGTTGACTGCAAATGTTCAGGGTACCAACGCTTCTTTGAGGAATAGAGATGAAGAAACTGCAGACAAGCAGATACAATTCAATGACC
RE_144 ----------------------------------------------------------------------------------------------------
110 120 130 140 150 160 170 180 190 200
AT5G17 AAAGTTTTGGGGGAAATGACTATGCACCCAAGGTACGGAAGCCATACACGATAACAAAAGAGAGAGAGAGATGGACAGATGAAGAGCACAAGAAGTTTGT
RE_144 ----------------------------------------------------------------------------------------------------
210 220 230 240 250 260 270 280 290 300
AT5G17 TGAAGCCTTGAAATTATACGGGCGAGCTTGGAGACGAATAGAAGAACATGTGGGCTCAAAGACCGCAGTTCAGATTCGAAGCCATGCTCAGAAGTTTTTC
RE_144 ----------------------------------------------------------------------------------------------------
310 320 330 340 350 360 370 380 390
AT5G17 TCTAAGGTTGCTCGAGAA--GCAACTGGAGGTGATGGGAGCTCAGTAGAGCCGATTGTAATACCTCCTCCTCGTCCCAAGAGAAAGCCAGCGCATCCGTA
: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_144 -----------------ATGGCAACTGGAGGTGATGGGAGCTCAGTAGAGCCGATTGTAATACCTCCTCCTCGTCCCAAGAGAAAGCCAGCGCATCCGTA
10 20 30 40 50 60 70 80
400 410 420 430 440 450 460 470 480 490
AT5G17 CCCTCGTAAGTTTGGGAACGAGGCAGATCAAACAAGTAGATCGGTTTCTCCCTCAGAACGTGATACTCAATCTCCAACCTCTGTGTTGTCCACTGTTGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_144 CCCTCGTAAGTTTGGGAACGAGGCAGATCAAACAAGTAGATCGGTTTCTCCCTCAGAACGTGATACTCAATCTCCAACCTCTGTGTTGTCCACTGTTGGA
90 100 110 120 130 140 150 160 170 180
500 510 520 530 540 550 560 570 580 590
AT5G17 TCAGAAGCATTGTGTTCCCTTGATTCGAGTTCACCCAATCGAAGCTTGTCCCCAGTTTCTTCTGCATCACCACCAGCTGCTCTTACAACCACTGCAAATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_144 TCAGAAGCATTGTGTTCCCTTGATTCGAGTTCACCCAATCGAAGCTTGTCCCCAGTTTCTTCTGCATCACCACCAGCTGCTCTTACAACCACTGCAAATG
190 200 210 220 230 240 250 260 270 280
600 610 620 630 640 650 660 670 680 690
AT5G17 CACCTGAAGAGCTTGAGACTCTGAAGCTGGAGTTGTTTCCTAGTGAGAGACTCTTAAACAGGGAGAGCTCGATCAAGGAACCAACGAAGCAAAGTCTTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_144 CACCTGAAGAGCTTGAGACTCTGAAGCTGGAGTTGTTTCCTAGTGAGAGACTCTTAAACAGGGAGAGCTCGATCAAGGAACCAACGAAGCAAAGTCTTAA
290 300 310 320 330 340 350 360 370 380
700 710 720 730 740 750 760 770 780 790
AT5G17 ACTCTTTGGGAAGACAGTTTTGGTATCTGATTCAGGCATGTCCTCTTCTCTAACAACTTCAACATATTGTAAATCCCCAATTCAGCCATTACCACGGAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_144 ACTCTTTGGGAAGACAGTTTTGGTATCTGATTCAGGCATGTCCTCTTCTCTAACAACTTCAACATATTGTAAATCCCCAATTCAGCCATTACCACGGAAA
390 400 410 420 430 440 450 460 470 480
800 810 820 830 840 850 860 870 880 890
AT5G17 CTCTCATCATCCAAGACACTACCCATAATAAGAAACTCACAAGAAGAACTCTTGAGCTGCTGGATACAAGTCCCTCTTAAGCAAGAAGATGTGGAAAATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_144 CTCTCATCATCCAAGACACTACCCATAATAAGAAACTCACAAGAAGAACTCTTGAGCTGCTGGATACAAGTCCCTCTTAAGCAAGAAGATGTGGAAAATA
490 500 510 520 530 540 550 560 570 580
900 910 920 930 940 950 960 970 980 990
AT5G17 GATGTTTGGATTCAGGAAAGGCTGTCCAAAACGAAGGATCATCGACTGGATCAAACACTGGTTCGGTGGATGATACGGGACACACGGAAAAGACCACAGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_144 GATGTTTGGATTCAGGAAAGGCTGTCCAAAACGAAGGATCATCGACTGGATCAAACACTGGTTCGGTGGATGATACGGGACACACGGAAAAGACCACAGA
590 600 610 620 630 640 650 660 670 680
1000 1010 1020 1030 1040 1050 1060 1070 1080 1090
AT5G17 ACCCGAAACAATGCTATGTCAATGGGAGTTTAAACCAAGTGAGAGGTCTGCATTTTCTGAGCTCAGAAGAACAAACTCCGAGTCAAATTCAAGAGGATTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_144 ACCCGAAACAATGCTATGTCAATGGGAGTTTAAACCAAGTGAGAGGTCTGCATTTTCTGAGCTCAGAAGAACAAACTCCGAGTCAAATTCAAGAGGATTT
690 700 710 720 730 740 750 760 770 780
1100 1110 1120 1130 1140 1150 1160
AT5G17 GGTCCATACAAGAAGAGAAAGATGGTAACAGAAGAAGAAGAGCATGAGATTCATCTCCACTTA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_144 GGTCCATACAAGAAGAGAAAGATGGTAACAGAAGAAGAAGAGCATGAGATTCATCTCCACTTA
790 800 810 820 830 840
10 20 30 40 50 60 70 80 90 100
AT5G17 MASSPLTANVQGTNASLRNRDEETADKQIQFNDQSFGGNDYAPKVRKPYTITKERERWTDEEHKKFVEALKLYGRAWRRIEEHVGSKTAVQIRSHAQKFF
RE_144 ----------------------------------------------------------------------------------------------------
110 120 130 140 150 160 170 180 190 200
AT5G17 SKVAREATGGDGSSVEPIVIPPPRPKRKPAHPYPRKFGNEADQTSRSVSPSERDTQSPTSVLSTVGSEALCSLDSSSPNRSLSPVSSASPPAALTTTANA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_144 -----MATGGDGSSVEPIVIPPPRPKRKPAHPYPRKFGNEADQTSRSVSPSERDTQSPTSVLSTVGSEALCSLDSSSPNRSLSPVSSASPPAALTTTANA
10 20 30 40 50 60 70 80 90
210 220 230 240 250 260 270 280 290 300
AT5G17 PEELETLKLELFPSERLLNRESSIKEPTKQSLKLFGKTVLVSDSGMSSSLTTSTYCKSPIQPLPRKLSSSKTLPIIRNSQEELLSCWIQVPLKQEDVENR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_144 PEELETLKLELFPSERLLNRESSIKEPTKQSLKLFGKTVLVSDSGMSSSLTTSTYCKSPIQPLPRKLSSSKTLPIIRNSQEELLSCWIQVPLKQEDVENR
100 110 120 130 140 150 160 170 180 190
310 320 330 340 350 360 370 380
AT5G17 CLDSGKAVQNEGSSTGSNTGSVDDTGHTEKTTEPETMLCQWEFKPSERSAFSELRRTNSESNSRGFGPYKKRKMVTEEEEHEIHLHL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_144 CLDSGKAVQNEGSSTGSNTGSVDDTGHTEKTTEPETMLCQWEFKPSERSAFSELRRTNSESNSRGFGPYKKRKMVTEEEEHEIHLHL
200 210 220 230 240 250 260 270 280
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