| Code name | RE_1455 | |||
|---|---|---|---|---|
| Locus | AT5G40350 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.50%一致 | |||
| comment | 0115_アミノ酸配列70%以上一致 | |||
| sequence |
>RE_1455_642bp ATGGAGAAAAGAGAAAGTAGTGGTGGGTCTGGATCAGGAGATGCAGAGGTGAGAAAAGGGCCATGGACGATGGAAGAAGATTTGATTCTCATCAATTATA TCGCCAATCATGGTGAAGGTGTTTGGAACTCTCTCGCCAAATCTGCAGGACTAAAACGCACCGGGAAAAGTTGCCGGCTCCGGTGGCTGAACTACCTCCG ACCTGATGTGCGACGGGGAAATATCACACCAGAAGAACGGCTCACCATCATGGAACTTCATGCAAAATGGGGAAATAGGTGGTCAAAAATTGCAAAGCAT TTACCAGGAAGAACCGACAATGAGATAAAGAATTTTTGGAGGACTAAGATCCAGAAATACATCATCAAGAGCGGAGAAACGACGACCGTTGGATCACAAA GCTCCGAGTTTATAAACCATCATGCGACAACGAGCCATGTCATGAATGATACTCAAGAAACCATGGATATGTATTCTCCAACGACGTCGTATCAACATGC CAGCAATATTAATCAGCAGCTTAATTATGGTAATTATGTGCCTGAATCCGGTTCGATCATGATGCCATTATCTGTTGATCAATCCGAACAAAACTATTGG AGCGTCGATGATCTTTGGCCCATGAATATATATAATGGTAAT >RE_1455_translated MEKRESSGGSGSGDAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEERLTIMELHAKWGNRWSKIAKH LPGRTDNEIKNFWRTKIQKYIIKSGETTTVGSQSSEFINHHATTSHVMNDTQETMDMYSPTTSYQHASNINQQLNYGNYVPESGSIMMPLSVDQSEQNYW SVDDLWPMNIYNGN |
|||
| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 641/642 (99.8%)（アミノ酸配列で213/214 (99.5%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT5G40 ATGGAGAAAAGAGAAAGTAGTGGTGGGTCTGGATCAGGAGATGCAGAGGTGAGAAAAGGGCCATGGACGATGGAAGAAGATTTGATTCTCATCAATTATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_145 ATGGAGAAAAGAGAAAGTAGTGGTGGGTCTGGATCAGGAGATGCAGAGGTGAGAAAAGGGCCATGGACGATGGAAGAAGATTTGATTCTCATCAATTATA
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G40 TCGCCAATCATGGTGAAGGTGTTTGGAACTCTCTCGCCAAATCTGCAGGACTAAAACGCACCGGGAAAAGTTGCCGGCTCCGGTGGCTGAACTACCTCCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_145 TCGCCAATCATGGTGAAGGTGTTTGGAACTCTCTCGCCAAATCTGCAGGACTAAAACGCACCGGGAAAAGTTGCCGGCTCCGGTGGCTGAACTACCTCCG
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT5G40 ACCTGATGTGCGACGGGGAAATATCACACCAGAAGAACAGCTCACCATCATGGAACTTCATGCAAAATGGGGAAATAGGTGGTCAAAAATTGCAAAGCAT
:::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_145 ACCTGATGTGCGACGGGGAAATATCACACCAGAAGAACGGCTCACCATCATGGAACTTCATGCAAAATGGGGAAATAGGTGGTCAAAAATTGCAAAGCAT
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT5G40 TTACCAGGAAGAACCGACAATGAGATAAAGAATTTTTGGAGGACTAAGATCCAGAAATACATCATCAAGAGCGGAGAAACGACGACCGTTGGATCACAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_145 TTACCAGGAAGAACCGACAATGAGATAAAGAATTTTTGGAGGACTAAGATCCAGAAATACATCATCAAGAGCGGAGAAACGACGACCGTTGGATCACAAA
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT5G40 GCTCCGAGTTTATAAACCATCATGCGACAACGAGCCATGTCATGAATGATACTCAAGAAACCATGGATATGTATTCTCCAACGACGTCGTATCAACATGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_145 GCTCCGAGTTTATAAACCATCATGCGACAACGAGCCATGTCATGAATGATACTCAAGAAACCATGGATATGTATTCTCCAACGACGTCGTATCAACATGC
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT5G40 CAGCAATATTAATCAGCAGCTTAATTATGGTAATTATGTGCCTGAATCCGGTTCGATCATGATGCCATTATCTGTTGATCAATCCGAACAAAACTATTGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_145 CAGCAATATTAATCAGCAGCTTAATTATGGTAATTATGTGCCTGAATCCGGTTCGATCATGATGCCATTATCTGTTGATCAATCCGAACAAAACTATTGG
510 520 530 540 550 560 570 580 590 600
610 620 630 640
AT5G40 AGCGTCGATGATCTTTGGCCCATGAATATATATAATGGTAAT
::::::::::::::::::::::::::::::::::::::::::
RE_145 AGCGTCGATGATCTTTGGCCCATGAATATATATAATGGTAAT
610 620 630 640
10 20 30 40 50 60 70 80 90 100
AT5G40 MEKRESSGGSGSGDAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLTIMELHAKWGNRWSKIAKH
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
RE_145 MEKRESSGGSGSGDAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEERLTIMELHAKWGNRWSKIAKH
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT5G40 LPGRTDNEIKNFWRTKIQKYIIKSGETTTVGSQSSEFINHHATTSHVMNDTQETMDMYSPTTSYQHASNINQQLNYGNYVPESGSIMMPLSVDQSEQNYW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_145 LPGRTDNEIKNFWRTKIQKYIIKSGETTTVGSQSSEFINHHATTSHVMNDTQETMDMYSPTTSYQHASNINQQLNYGNYVPESGSIMMPLSVDQSEQNYW
110 120 130 140 150 160 170 180 190 200
210
AT5G40 SVDDLWPMNIYNGN
::::::::::::::
RE_145 SVDDLWPMNIYNGN
210
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