◆◆◆RE_1457 detail◆◆◆

Code name	RE_1457
Locus	AT5G47390
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.50%一致
comment	0520_20080229_1457_FRW1_255
sequence	>RE_1457_1095bp ATGACTCGTCGATGTTCTCACTGCAATCACAATGGCCACAACTCTCGGACTTGTCCCAATCGCGGCGTGAAGCTCTTTGGTGTTCGGCTCACCGAAGGTT CGATCCGGAAAAGTGCAAGTATGGGTAATCTTAGCCATTACACGGGTTCTGGATCGGGTGGGCATGGAACCGGGTCCAACACTCCGGGTTCTCCGGGTGA CGTCCCTGACCATGTCGCTGGTGATGATTACGCTTCTGAGGATTTCGTTGCTGGCTCTTCCTCTAGCCGCGAGAGAAAGAAAGGAACTCCATGGACAGAG GAAGAACACAGGATGTTCTTATTAGGTTTACAGAAGCTGGGTAAAGGTGATTGGAGAGGTATCTCAAGAAACTATGTGACCACTAGGACACCTACACAAG TTGCTAGCCATGCTCAGAAGTATTTCATCAGACAATCCAATGTCTCTCGTCGCAGAAGACGTTCTAGTCTCTTTGATATGGTTCCTGATGAGGTTGGAGA TATTCCCATGGATTTGCAAGAACCAGAGGAAGATAATATTCCTGTGGAAACTGAAATGCAAGGTGCTGACTCTATTCATCAGACACTTGCTCCTAGCTCA CTTCACGCACCGTCAATCTTGGAAATCGAAGAATGTGAATCAATGGACTCCACAAACTCTACCACCGGGGAACCAACCGCAACTGCCGCTGCTGCTTCTT CTTCTTCCAGACTAGAAGAAACCACACAACTGCAATCACAACTGCAACCGCAGCCGCAACTACCTGGCTCATTCCCCATACTATATCCGACCTACTTTTC ACCATATTACCCGTTTCCATTCCCAATATGGCCTGCTGGTTATGTTCCTGAACCACCCAAGAAAGAGGAAACTCATGAAATTCTCAGACCAACTGCTGTG CACTCGAAAGCTCCTATCAATGTTGACGAGCTTCTTGGTATGTCTAAGCTCAGCCTTGCAGAGTCCAACAAACATGGAGAATCCGATCAGTCTCTTTCAT TGAAGCTAGGTGGCGGGTCATCTTCAAGACAATCAGCATTTCACCCGAATCCTAGCTCTGATAGTTCAGACATCAAAAGCGTGATACACGCTTTA >RE_1457_translated MTRRCSHCNHNGHNSRTCPNRGVKLFGVRLTEGSIRKSASMGNLSHYTGSGSGGHGTGSNTPGSPGDVPDHVAGDDYASEDFVAGSSSSRERKKGTPWTE EEHRMFLLGLQKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRQSNVSRRRRRSSLFDMVPDEVGDIPMDLQEPEEDNIPVETEMQGADSIHQTLAPSS LHAPSILEIEECESMDSTNSTTGEPTATAAAASSSSRLEETTQLQSQLQPQPQLPGSFPILYPTYFSPYYPFPFPIWPAGYVPEPPKKEETHEILRPTAV HSKAPINVDELLGMSKLSLAESNKHGESDQSLSLKLGGGSSSRQSAFHPNPSSDSSDIKSVIHAL
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 1092/1095 (99.7%)（アミノ酸配列で363/365 (99.5%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G47 ATGACTCGTCGATGTTCTCACTGCAATCACAATGGCCACAACTCTCGGACTTGTCCCAATCGCGGCGTGAAGCTCTTTGGTGTTCGGCTCACCGAAGGTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_145 ATGACTCGTCGATGTTCTCACTGCAATCACAATGGCCACAACTCTCGGACTTGTCCCAATCGCGGCGTGAAGCTCTTTGGTGTTCGGCTCACCGAAGGTT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G47 CGATCCGGAAAAGTGCAAGTATGGGTAATCTTAGCCATTACACGGGTTCTGGATCGGGTGGGCATGGAACCGGGTCCAACACTCCGGGTTCTCCGGGTGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_145 CGATCCGGAAAAGTGCAAGTATGGGTAATCTTAGCCATTACACGGGTTCTGGATCGGGTGGGCATGGAACCGGGTCCAACACTCCGGGTTCTCCGGGTGA 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G47 TGTCCCTGACCATGTCGCTGGTGATGGTTACGCTTCTGAGGATTTCGTTGCTGGCTCTTCCTCTAGCCGCGAGAGAAAGAAAGGAACTCCATGGACAGAG ::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_145 CGTCCCTGACCATGTCGCTGGTGATGATTACGCTTCTGAGGATTTCGTTGCTGGCTCTTCCTCTAGCCGCGAGAGAAAGAAAGGAACTCCATGGACAGAG 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G47 GAAGAACACAGGATGTTCTTATTAGGTTTACAGAAGCTGGGTAAAGGTGATTGGAGAGGTATCTCAAGAAACTATGTGACCACTAGGACACCTACACAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_145 GAAGAACACAGGATGTTCTTATTAGGTTTACAGAAGCTGGGTAAAGGTGATTGGAGAGGTATCTCAAGAAACTATGTGACCACTAGGACACCTACACAAG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G47 TTGCTAGCCATGCTCAGAAGTATTTCATCAGACAATCCAATGTCTCTCGTCGCAAAAGACGTTCTAGTCTCTTTGATATGGTTCCTGATGAGGTTGGAGA :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::: RE_145 TTGCTAGCCATGCTCAGAAGTATTTCATCAGACAATCCAATGTCTCTCGTCGCAGAAGACGTTCTAGTCTCTTTGATATGGTTCCTGATGAGGTTGGAGA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G47 TATTCCCATGGATTTGCAAGAACCAGAGGAAGATAATATTCCTGTGGAAACTGAAATGCAAGGTGCTGACTCTATTCATCAGACACTTGCTCCTAGCTCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_145 TATTCCCATGGATTTGCAAGAACCAGAGGAAGATAATATTCCTGTGGAAACTGAAATGCAAGGTGCTGACTCTATTCATCAGACACTTGCTCCTAGCTCA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G47 CTTCACGCACCGTCAATCTTGGAAATCGAAGAATGTGAATCAATGGACTCCACAAACTCTACCACCGGGGAACCAACCGCAACTGCCGCTGCTGCTTCTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_145 CTTCACGCACCGTCAATCTTGGAAATCGAAGAATGTGAATCAATGGACTCCACAAACTCTACCACCGGGGAACCAACCGCAACTGCCGCTGCTGCTTCTT 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT5G47 CTTCTTCCAGACTAGAAGAAACCACACAACTGCAATCACAACTGCAACCGCAGCCGCAACTACCTGGCTCATTCCCCATACTATATCCGACCTACTTTTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_145 CTTCTTCCAGACTAGAAGAAACCACACAACTGCAATCACAACTGCAACCGCAGCCGCAACTACCTGGCTCATTCCCCATACTATATCCGACCTACTTTTC 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT5G47 ACCATATTACCCGTTTCCATTCCCAATATGGCCTGCTGGTTATGTTCCTGAACCACCCAAGAAAGAGGAAACTCATGAAATTCTCAGACCAACTGCTGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_145 ACCATATTACCCGTTTCCATTCCCAATATGGCCTGCTGGTTATGTTCCTGAACCACCCAAGAAAGAGGAAACTCATGAAATTCTCAGACCAACTGCTGTG 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 AT5G47 CACTCGAAAGCTCCTATCAATGTTGACGAGCTTCTTGGTATGTCTAAGCTCAGCCTTGCAGAGTCCAACAAACATGGAGAATCCGATCAGTCTCTTTCAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_145 CACTCGAAAGCTCCTATCAATGTTGACGAGCTTCTTGGTATGTCTAAGCTCAGCCTTGCAGAGTCCAACAAACATGGAGAATCCGATCAGTCTCTTTCAT 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 AT5G47 TGAAGCTAGGTGGCGGGTCATCTTCAAGACAATCAGCATTTCACCCGAATCCTAGCTCTGATAGTTCAGACATCAAAAGCGTGATACACGCTTTA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_145 TGAAGCTAGGTGGCGGGTCATCTTCAAGACAATCAGCATTTCACCCGAATCCTAGCTCTGATAGTTCAGACATCAAAAGCGTGATACACGCTTTA 1010 1020 1030 1040 1050 1060 1070 1080 1090 10 20 30 40 50 60 70 80 90 100 AT5G47 MTRRCSHCNHNGHNSRTCPNRGVKLFGVRLTEGSIRKSASMGNLSHYTGSGSGGHGTGSNTPGSPGDVPDHVAGDGYASEDFVAGSSSSRERKKGTPWTE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: RE_145 MTRRCSHCNHNGHNSRTCPNRGVKLFGVRLTEGSIRKSASMGNLSHYTGSGSGGHGTGSNTPGSPGDVPDHVAGDDYASEDFVAGSSSSRERKKGTPWTE 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G47 EEHRMFLLGLQKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDMVPDEVGDIPMDLQEPEEDNIPVETEMQGADSIHQTLAPSS :::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::: RE_145 EEHRMFLLGLQKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRQSNVSRRRRRSSLFDMVPDEVGDIPMDLQEPEEDNIPVETEMQGADSIHQTLAPSS 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G47 LHAPSILEIEECESMDSTNSTTGEPTATAAAASSSSRLEETTQLQSQLQPQPQLPGSFPILYPTYFSPYYPFPFPIWPAGYVPEPPKKEETHEILRPTAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_145 LHAPSILEIEECESMDSTNSTTGEPTATAAAASSSSRLEETTQLQSQLQPQPQLPGSFPILYPTYFSPYYPFPFPIWPAGYVPEPPKKEETHEILRPTAV 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 AT5G47 HSKAPINVDELLGMSKLSLAESNKHGESDQSLSLKLGGGSSSRQSAFHPNPSSDSSDIKSVIHAL ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_145 HSKAPINVDELLGMSKLSLAESNKHGESDQSLSLKLGGGSSSRQSAFHPNPSSDSSDIKSVIHAL 310 320 330 340 350 360

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