◆◆◆RE_1462 detail◆◆◆

Code name	RE_1462
Locus	AT5G52660
Forward primer
Reverse primer
Alignment with TAIR7CDS	アミノ酸配列99.40%一致
comment	0115_アミノ酸配列70%以上一致
sequence	>RE_1462_990bp ATGGTCTCTAGAAATTCTGACGGATATTTCTTGGATCCGACCGGTATGACTGTTCCTGGTCTCGGACCTTCCTTTACAGCCGCCGTTTCTTCTTCTTCTT CACCAACGACTTCTTCTACGGCCGTGGCTGTGGCGGATGTGACGGCGATGGTTTCTTCTTCGGAGGAGGATTTGAGTAAGAAGATTAGGAAGCCTTATAC TATTACTAAGTCTAGAGAGAGCTGGACGGAGCCTGAGCATGATAAATTCCTTGAAGCTCTTCAATTGTTTGATAGAGACTGGAAGAAGATTGGAGCTTTT ATTGGTTCAAAGACAGTGATTCAGATACGAAGTCATGCTCAGAAGTATTTTCTTAAGGTACAAAAGAGTGGGACCGGTGAACATCTCCCTCCTCCTCGAC CTAAAAGGAAAGCCGCTCATCCATATCCTCAGAAGGCTCACAAGAATGTGCAACTGCAAGTACCAGGGTCATTCAAGTCAACATCTGAACCAAATGACCC AAGTTTTATGTTTAGGCCTGAGTCTTCTTCAATGCTGATGACTTCGCCAACCACTGCTGCTGCGGCTCCATGGACAAATAATGCGCAAACAATTAGCTTC ACTCCCCTCCCAAAAGGAGCAGGAGCTAATAACAATTGTTCTAGTAGTTCTGAAAATACTCCAAGACCACGATCCAACAGGGACGCAAGAGACCATGGAA ATGTTGGCCATTCATTAAGAGTTTTACCGGACTTTGCCCAAGTATACGGCTTCATTGGAAGTGTGTTTGACCCATATGCAAGTAATCATCTACAAAAGCT GAAGAAGATGGACCCCATAGATGTTGAAACAGTGTTACTATTGATGAGAAATCTATCCATCAACTTGTCTAGTCCTGACTTTGAGGATCATAGACGGCTT CTTTCGTCTTATGATATCGGATCTGAGACAGCAACTGATTATGGTGGAGTGAATAAAACCTTAAACAAAGACCCACCTGAAATCTCTACT >RE_1462_translated MVSRNSDGYFLDPTGMTVPGLGPSFTAAVSSSSSPTTSSTAVAVADVTAMVSSSEEDLSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIGAF IGSKTVIQIRSHAQKYFLKVQKSGTGEHLPPPRPKRKAAHPYPQKAHKNVQLQVPGSFKSTSEPNDPSFMFRPESSSMLMTSPTTAAAAPWTNNAQTISF TPLPKGAGANNNCSSSSENTPRPRSNRDARDHGNVGHSLRVLPDFAQVYGFIGSVFDPYASNHLQKLKKMDPIDVETVLLLMRNLSINLSSPDFEDHRRL LSSYDIGSETATDYGGVNKTLNKDPPEIST
Alignment	◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 988/990 (99.8%)（アミノ酸配列で328/330 (99.4%)）一致しました。 10 20 30 40 50 60 70 80 90 100 AT5G52 ATGGTCTCTAGAAATTCTGACGGATATTTCTTGGATCCGACCGGTATGACTGTTCCTGGTCTCGGACCTTCCTTTACAGCCGCCGTTTCTTCTTCTTCTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_146 ATGGTCTCTAGAAATTCTGACGGATATTTCTTGGATCCGACCGGTATGACTGTTCCTGGTCTCGGACCTTCCTTTACAGCCGCCGTTTCTTCTTCTTCTT 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G52 CACCAACGACTTCTTCTACGGCCGTGGCTGTGGCGGATGTGACGGCGATGGTTTCTTCTTCGGAGGAGGATTTGAGTAAGAAGATTAGGAAGCCTTATAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_146 CACCAACGACTTCTTCTACGGCCGTGGCTGTGGCGGATGTGACGGCGATGGTTTCTTCTTCGGAGGAGGATTTGAGTAAGAAGATTAGGAAGCCTTATAC 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G52 TATTACTAAGTCTAGAGAGAGCTGGACGGAGCCTGAGCATGATAAATTCCTTGAAGCTCTTCAATTGTTTGATAGAGACTGGAAGAAGATTGAAGCTTTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::: RE_146 TATTACTAAGTCTAGAGAGAGCTGGACGGAGCCTGAGCATGATAAATTCCTTGAAGCTCTTCAATTGTTTGATAGAGACTGGAAGAAGATTGGAGCTTTT 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT5G52 ATTGGTTCAAAGACAGTGATTCAGATACGAAGTCATGCTCAGAAGTATTTTCTTAAGGTACAAAAGAGTGGGACCGGTGAACATCTCCCTCCTCCTCGAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_146 ATTGGTTCAAAGACAGTGATTCAGATACGAAGTCATGCTCAGAAGTATTTTCTTAAGGTACAAAAGAGTGGGACCGGTGAACATCTCCCTCCTCCTCGAC 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT5G52 CTAAAAGGAAAGCCGCTCATCCATATCCTCAGAAGGCTCACAAGAATGTGCAACTGCAAGTACCAGGGTCATTCAAGTCAACATCTGAACCAAATGACCC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_146 CTAAAAGGAAAGCCGCTCATCCATATCCTCAGAAGGCTCACAAGAATGTGCAACTGCAAGTACCAGGGTCATTCAAGTCAACATCTGAACCAAATGACCC 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT5G52 AAGTTTTATGTTTAGGCCTGAGTCTTCTTCAATGCTGATGACTTCGCCAACCACTGCTGCTGCGGCTCCATGGACAAATAATGCGCAAACAATTAGCTTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_146 AAGTTTTATGTTTAGGCCTGAGTCTTCTTCAATGCTGATGACTTCGCCAACCACTGCTGCTGCGGCTCCATGGACAAATAATGCGCAAACAATTAGCTTC 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT5G52 ACTCCCCTCCCAAAAGGAGCAGGAGCTAATAACAATTGTTCTAGTAGTTCTGAAAATACTCCAAGACCACGATCCAACAGGGACGCAAGAGACCATGGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_146 ACTCCCCTCCCAAAAGGAGCAGGAGCTAATAACAATTGTTCTAGTAGTTCTGAAAATACTCCAAGACCACGATCCAACAGGGACGCAAGAGACCATGGAA 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 AT5G52 ATGTTGGCCATTCATTAAGAGTTTTACCGGACTTTGCCCAAGTATACGGCTTCATTGGAAGTGTGTTTGACCCATATGCAAGTAATCATCTACAAAAGCT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_146 ATGTTGGCCATTCATTAAGAGTTTTACCGGACTTTGCCCAAGTATACGGCTTCATTGGAAGTGTGTTTGACCCATATGCAAGTAATCATCTACAAAAGCT 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 AT5G52 GAAGAAGATGGACCCCATAGATGTTGAAACAGTGTTACTATTGATGAGAAATCTATCCATCAACTTGTCTAGTCCTGACTTTGAGGATCATAGACGGCTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_146 GAAGAAGATGGACCCCATAGATGTTGAAACAGTGTTACTATTGATGAGAAATCTATCCATCAACTTGTCTAGTCCTGACTTTGAGGATCATAGACGGCTT 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 AT5G52 CTTTCGTCTTATGATATCGGATCTGAGACAGCAACTGATCATGGTGGAGTGAATAAAACCTTAAACAAAGACCCACCTGAAATCTCTACT ::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: RE_146 CTTTCGTCTTATGATATCGGATCTGAGACAGCAACTGATTATGGTGGAGTGAATAAAACCTTAAACAAAGACCCACCTGAAATCTCTACT 910 920 930 940 950 960 970 980 990 10 20 30 40 50 60 70 80 90 100 AT5G52 MVSRNSDGYFLDPTGMTVPGLGPSFTAAVSSSSSPTTSSTAVAVADVTAMVSSSEEDLSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAF ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :: RE_146 MVSRNSDGYFLDPTGMTVPGLGPSFTAAVSSSSSPTTSSTAVAVADVTAMVSSSEEDLSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIGAF 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT5G52 IGSKTVIQIRSHAQKYFLKVQKSGTGEHLPPPRPKRKAAHPYPQKAHKNVQLQVPGSFKSTSEPNDPSFMFRPESSSMLMTSPTTAAAAPWTNNAQTISF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_146 IGSKTVIQIRSHAQKYFLKVQKSGTGEHLPPPRPKRKAAHPYPQKAHKNVQLQVPGSFKSTSEPNDPSFMFRPESSSMLMTSPTTAAAAPWTNNAQTISF 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT5G52 TPLPKGAGANNNCSSSSENTPRPRSNRDARDHGNVGHSLRVLPDFAQVYGFIGSVFDPYASNHLQKLKKMDPIDVETVLLLMRNLSINLSSPDFEDHRRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_146 TPLPKGAGANNNCSSSSENTPRPRSNRDARDHGNVGHSLRVLPDFAQVYGFIGSVFDPYASNHLQKLKKMDPIDVETVLLLMRNLSINLSSPDFEDHRRL 210 220 230 240 250 260 270 280 290 300 310 320 330 AT5G52 LSSYDIGSETATDHGGVNKTLNKDPPEIST :::::::::::::.:::::::::::::::: RE_146 LSSYDIGSETATDYGGVNKTLNKDPPEIST 310 320 330

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