Code name | RE_1478 | |||
---|---|---|---|---|
Locus | AT4G00180 | |||
Forward primer | ||||
Reverse primer | ||||
Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
comment | 0520_20080229_1478_FR_55 | |||
sequence |
>RE_1478_720bp ATGTCGAGCATGTCCATGTCGTCCTCCTCAGCTCCAGCTTTTCCACCGGACCACTTCTCATCTACGGACCAGCTCTGTTACGTCCATTGCAGCTTCTGCG ACACTGTCCTTGCTGTGAGTGTTCCTCCGAGTAGTTTGTTCAAGACGGTGACGGTCAGATGCGGCCACTGTTCGAACCTCTTGTCGGTGACCGTGAGCAT GAGAGCTCTTCTTCTTCCATCCGTTTCCAACCTTGGCCATTCCTTTTTACCTCCCCCTCCTCCTCCTCCTCCTCCAAATCTTTTGGAGGAAATGCGAAGC GGAGGGCAGAATATAAACATGAACATGATGATGAGCCATCACGCTTCAGCTCACCACCCGAACGAGCATTTGGTTATGGCGACTCGCAACGGAAGATCAG TGGATCATCTACAAGAGATGCCTCGGCCACCACCAGCCAATAGACCCCCAGAGAAGCGACAAAGAGTACCATCTGCATACAACCGATTCATCAAAGAGGA GATCCAACGTATAAAGGCAGGCAACCCTGATATCAGCCACAGAGAAGCCTTCAGTGCTGCTGCCAAAAACTGGGCTCATTTCCCTCACATACACTTTGGA CTCATGGCTGACCATCCTCCCACGAAGAAGGCTAACGTGCGCCAACAGGAAGGAGAGGATGGGATGATGGGAAGAGAAGGGTCTTACGGTTCAGCTGCCA ACGTTGGGGTGGCCCATAAC >RE_1478_translated MSSMSMSSSSAPAFPPDHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSFLPPPPPPPPPNLLEEMRS GGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFG LMADHPPTKKANVRQQEGEDGMMGREGSYGSAANVGVAHN |
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Alignment |
◆CDS(TAIRver.9)_without_stop_codonとのalignment◆ 718/720 (99.7%)(アミノ酸配列で239/240 (99.6%))一致しました。 10 20 30 40 50 60 70 80 90 100 AT4G00 ATGTCGAGCATGTCCATGTCGTCCTCCTCAGCTCCAGCTTTTCCACCGGACCACTTCTCATCTACGGACCAGCTCTGTTACGTCCATTGCAGCTTCTGCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_147 ATGTCGAGCATGTCCATGTCGTCCTCCTCAGCTCCAGCTTTTCCACCGGACCACTTCTCATCTACGGACCAGCTCTGTTACGTCCATTGCAGCTTCTGCG 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G00 ACACTGTCCTTGCTGTGAGTGTTCCTCCGAGTAGTTTGTTCAAGACGGTGACGGTCAGATGCGGCCACTGTTCGAACCTTTTGTCGGTGACCGTGAGCAT ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::: RE_147 ACACTGTCCTTGCTGTGAGTGTTCCTCCGAGTAGTTTGTTCAAGACGGTGACGGTCAGATGCGGCCACTGTTCGAACCTCTTGTCGGTGACCGTGAGCAT 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 AT4G00 GAGAGCTCTTCTTCTTCCATCCGTTTCCAACCTTGGCCATTCCTTTTTACCTCCCCCTCCTCCTCCTCCTCCTCCAAATCTTTTGGAGGAAATGCGAAGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_147 GAGAGCTCTTCTTCTTCCATCCGTTTCCAACCTTGGCCATTCCTTTTTACCTCCCCCTCCTCCTCCTCCTCCTCCAAATCTTTTGGAGGAAATGCGAAGC 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 AT4G00 GGAGGGCAGAATATAAACATGAACATGATGATGAGCCATCACGCTTCAGCTCACCACCCGAACGAGCATTTGGTTATGGCGACTCGCAACGGAAGATCAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_147 GGAGGGCAGAATATAAACATGAACATGATGATGAGCCATCACGCTTCAGCTCACCACCCGAACGAGCATTTGGTTATGGCGACTCGCAACGGAAGATCAG 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 AT4G00 TGGATCATCTACAAGAGATGCCTCGGCCACCACCAGCCAATAGACCCCCAGAGAAGCGACAAAGAGTACCATCTGCATACAACCGATTCATCAAAGAGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_147 TGGATCATCTACAAGAGATGCCTCGGCCACCACCAGCCAATAGACCCCCAGAGAAGCGACAAAGAGTACCATCTGCATACAACCGATTCATCAAAGAGGA 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 AT4G00 GATCCAACGTATAAAGGCAGGCAACCCTGATATCAGCCACAGAGAAGCCTTCAGTGCTGCTGCCAAAAACTGGGCTCATTTCCCTCACATACACTTTGGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_147 GATCCAACGTATAAAGGCAGGCAACCCTGATATCAGCCACAGAGAAGCCTTCAGTGCTGCTGCCAAAAACTGGGCTCATTTCCCTCACATACACTTTGGA 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 AT4G00 CTCATGGCTGACCATCCTCCCACGAAGAAGGCTAACGTGCGCCAACAGGAAGGAGAGGATGGGATGATGGGAAGAGAAGGGTTTTACGGTTCAGCTGCCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::: RE_147 CTCATGGCTGACCATCCTCCCACGAAGAAGGCTAACGTGCGCCAACAGGAAGGAGAGGATGGGATGATGGGAAGAGAAGGGTCTTACGGTTCAGCTGCCA 610 620 630 640 650 660 670 680 690 700 710 720 AT4G00 ACGTTGGGGTGGCCCATAAC :::::::::::::::::::: RE_147 ACGTTGGGGTGGCCCATAAC 710 720 10 20 30 40 50 60 70 80 90 100 AT4G00 MSSMSMSSSSAPAFPPDHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSFLPPPPPPPPPNLLEEMRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_147 MSSMSMSSSSAPAFPPDHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSFLPPPPPPPPPNLLEEMRS 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 AT4G00 GGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: RE_147 GGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFG 110 120 130 140 150 160 170 180 190 200 210 220 230 240 AT4G00 LMADHPPTKKANVRQQEGEDGMMGREGFYGSAANVGVAHN ::::::::::::::::::::::::::: :::::::::::: RE_147 LMADHPPTKKANVRQQEGEDGMMGREGSYGSAANVGVAHN 210 220 230 240 |