| Code name | RE_1478 | |||
|---|---|---|---|---|
| Locus | AT4G00180 | |||
| Forward primer | ||||
| Reverse primer | ||||
| Alignment with TAIR7CDS | アミノ酸配列99.60%一致 | |||
| comment | 0520_20080229_1478_FR_55 | |||
| sequence |
>RE_1478_720bp ATGTCGAGCATGTCCATGTCGTCCTCCTCAGCTCCAGCTTTTCCACCGGACCACTTCTCATCTACGGACCAGCTCTGTTACGTCCATTGCAGCTTCTGCG ACACTGTCCTTGCTGTGAGTGTTCCTCCGAGTAGTTTGTTCAAGACGGTGACGGTCAGATGCGGCCACTGTTCGAACCTCTTGTCGGTGACCGTGAGCAT GAGAGCTCTTCTTCTTCCATCCGTTTCCAACCTTGGCCATTCCTTTTTACCTCCCCCTCCTCCTCCTCCTCCTCCAAATCTTTTGGAGGAAATGCGAAGC GGAGGGCAGAATATAAACATGAACATGATGATGAGCCATCACGCTTCAGCTCACCACCCGAACGAGCATTTGGTTATGGCGACTCGCAACGGAAGATCAG TGGATCATCTACAAGAGATGCCTCGGCCACCACCAGCCAATAGACCCCCAGAGAAGCGACAAAGAGTACCATCTGCATACAACCGATTCATCAAAGAGGA GATCCAACGTATAAAGGCAGGCAACCCTGATATCAGCCACAGAGAAGCCTTCAGTGCTGCTGCCAAAAACTGGGCTCATTTCCCTCACATACACTTTGGA CTCATGGCTGACCATCCTCCCACGAAGAAGGCTAACGTGCGCCAACAGGAAGGAGAGGATGGGATGATGGGAAGAGAAGGGTCTTACGGTTCAGCTGCCA ACGTTGGGGTGGCCCATAAC >RE_1478_translated MSSMSMSSSSAPAFPPDHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSFLPPPPPPPPPNLLEEMRS GGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFG LMADHPPTKKANVRQQEGEDGMMGREGSYGSAANVGVAHN |
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| Alignment |
◆CDS（TAIRver.9）_without_stop_codonとのalignment◆ 718/720 (99.7%)（アミノ酸配列で253/367 (68.9%)）一致しました。
10 20 30 40 50 60 70 80 90 100
AT4G00 ATGTCGAGCATGTCCATGTCGTCCTCCTCAGCTCCAGCTTTTCCACCGGACCACTTCTCATCTACGGACCAGCTCTGTTACGTCCATTGCAGCTTCTGCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_147 ATGTCGAGCATGTCCATGTCGTCCTCCTCAGCTCCAGCTTTTCCACCGGACCACTTCTCATCTACGGACCAGCTCTGTTACGTCCATTGCAGCTTCTGCG
10 20 30 40 50 60 70 80 90 100
110 120 130 140 150 160 170 180 190 200
AT4G00 ACACTGTCCTTGCTGTGAGTGTTCCTCCGAGTAGTTTGTTCAAGACGGTGACGGTCAGATGCGGCCACTGTTCGAACCTTTTGTCGGTGACCGTGAGCAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
RE_147 ACACTGTCCTTGCTGTGAGTGTTCCTCCGAGTAGTTTGTTCAAGACGGTGACGGTCAGATGCGGCCACTGTTCGAACCTCTTGTCGGTGACCGTGAGCAT
110 120 130 140 150 160 170 180 190 200
210 220 230 240 250 260 270 280 290 300
AT4G00 GAGAGCTCTTCTTCTTCCATCCGTTTCCAACCTTGGCCATTCCTTTTTACCTCCCCCTCCTCCTCCTCCTCCTCCAAATCTTTTGGAGGAAATGCGAAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_147 GAGAGCTCTTCTTCTTCCATCCGTTTCCAACCTTGGCCATTCCTTTTTACCTCCCCCTCCTCCTCCTCCTCCTCCAAATCTTTTGGAGGAAATGCGAAGC
210 220 230 240 250 260 270 280 290 300
310 320 330 340 350 360 370 380 390 400
AT4G00 GGAGGGCAGAATATAAACATGAACATGATGATGAGCCATCACGCTTCAGCTCACCACCCGAACGAGCATTTGGTTATGGCGACTCGCAACGGAAGATCAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_147 GGAGGGCAGAATATAAACATGAACATGATGATGAGCCATCACGCTTCAGCTCACCACCCGAACGAGCATTTGGTTATGGCGACTCGCAACGGAAGATCAG
310 320 330 340 350 360 370 380 390 400
410 420 430 440 450 460 470 480 490 500
AT4G00 TGGATCATCTACAAGAGATGCCTCGGCCACCACCAGCCAATAGACCCCCAGAGAAGCGACAAAGAGTACCATCTGCATACAACCGATTCATCAAAGAGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_147 TGGATCATCTACAAGAGATGCCTCGGCCACCACCAGCCAATAGACCCCCAGAGAAGCGACAAAGAGTACCATCTGCATACAACCGATTCATCAAAGAGGA
410 420 430 440 450 460 470 480 490 500
510 520 530 540 550 560 570 580 590 600
AT4G00 GATCCAACGTATAAAGGCAGGCAACCCTGATATCAGCCACAGAGAAGCCTTCAGTGCTGCTGCCAAAAACTGGGCTCATTTCCCTCACATACACTTTGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_147 GATCCAACGTATAAAGGCAGGCAACCCTGATATCAGCCACAGAGAAGCCTTCAGTGCTGCTGCCAAAAACTGGGCTCATTTCCCTCACATACACTTTGGA
510 520 530 540 550 560 570 580 590 600
610 620 630 640 650 660 670 680 690 700
AT4G00 CTCATGGCTGACCATCCTCCCACGAAGAAGGCTAACGTGCGCCAACAGGAAGGAGAGGATGGGATGATGGGAAGAGAAGGGTTTTACGGTTCAGCTGCCA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::
RE_147 CTCATGGCTGACCATCCTCCCACGAAGAAGGCTAACGTGCGCCAACAGGAAGGAGAGGATGGGATGATGGGAAGAGAAGGGTCTTACGGTTCAGCTGCCA
610 620 630 640 650 660 670 680 690 700
710 720
AT4G00 ACGTTGGGGTGGCCCATAAC
::::::::::::::::::::
RE_147 ACGTTGGGGTGGCCCATAAC
710 720
10 20 30 40 50 60 70 80 90 100
AT3G13 MGHHSCCNKQKVKRGLWSPEEDEKLINYINSYGHGCWSSVPKHAGTYTHIHGFCLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQ
::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::
RE_139 MGHHSCCNKQKVKRGLWSPEEDEKLINYINSYGHGCWSSVPKHAG---------LQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQ
10 20 30 40 50 60 70 80 90
110 120 130 140 150 160 170 180 190 200
AT3G13 IAKHLPGRTDNEVKNFWNSSIKKKLMSHHHHGHHHHHLSSMASLLTNLPYHNGFNPTTVDDESSRFMSNIITNTNPNFITPSHLSLPSPHVMTPLMFPTS
:::::::::::::::::::::::::::::::::
RE_139 IAKHLPGRTDNEVKNFWNSSIKKKLMSHHHHGH-------------------------------------------------------------------
100 110 120
210 220 230 240 250 260 270 280 290 300
AT3G13 REGDFKFLTTNNPNQSHHHDNNHYNNLDILSPTPTINNHHQPSLSSCPHDNNLQWPALPDFPASTISGFQETLQDYDDANKLNVFVTPFNDNAKKLLCGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_139 --------------------------------------HHQPSLSSCPHDNNLQWPALPDFPASTISGFQETLQDYDDANKLNVFVTPFNDNAKKLLCGE
130 140 150 160 170 180
310 320 330 340 350 360
AT3G13 VLEGKVLSSSSPISQDHGLFLPTTYNFQMTSTSDHQHHHRVDSYINHMIIPSSSSSSPISCGQYVIT
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
RE_139 VLEGKVLSSSSPISQDHGLFLPTTYNFQMTSTSDHQHHHRVDSYINHMIIPSSSSSSPISCGQYVIT
190 200 210 220 230 240 250
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