fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G01520.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Sb027895 not found in 294aa AT5G52660.1 1st_not 0.483050847 II
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G01520.1     MVTVNPSQAHCLPMKMSLPGFNTLPHTATTIPVSIRSNRTMSFFEDPTKKVRKPYTITKS
Sb027895_Sorbi1 ----DPSPLTFLSMV-----------SASAPPPPLQSDAAGS-GEDASKKVRKPYTITKS
                    :**    *.*            :*:: * .::*: : *  **.:************

AT1G01520.1     RENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKEHLPP
Sb027895_Sorbi1 RESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPP
                **.*************:*********:***************************.**:**

AT1G01520.1     PRPKRKANHPYPQKAPKFTLSSSNALFQHDYLYNTNSHPVISTTRKHGL-------VHCD
Sb027895_Sorbi1 PRPKRKAAHPYPQKASK---------NEPNYGLKTDSS---SIHRNSGMNVSVSSWAHSS
                ******* *******.*          : :*  :*:*    *  *: *:       .*..

AT1G01520.1     V--SIPSSVIKEEFGVS----ENCCSTSSSRDKQRTRIVTETNDQESCGKPHRVAPNFAE
Sb027895_Sorbi1 IPQAVASTMVKEDLGAGTPGPNNFCS-SSTEGPPRTWQPGETNDQINQVPSLRLMPDFAE
                :  ::.*:::**::*..    :* ** **:..  **    ***** .   . *: *:***

AT1G01520.1     VYNFIGSVFDPKTTGHVKRLKEMDPINLETVLLLMKNLSVNLTSPEFDEQRKLISSYNAS
Sb027895_Sorbi1 VYSFLGSVFDPSTSGHLQKLKEMNPIDVETALLLMRNLSINLTSPDFEDQRKLLSSYSTS
                **.*:******.*:**:::****:**::**.****:***:*****:*::****:***.:*

AT1G01520.1     --------------------
Sb027895_Sorbi1 DGLQLGSSRSSALAMSTPFM
BoxShade v3.31 C (beta, 970507) Output
AT1G01520.1     M V T V N P S Q A H C L P M K M S L P G F N T L P H T A T T I P V S I R S N R T M S F F E D P T K K V R K P Y T I T K S
Sb027895_Sorbi1    - - - - D P S P L T F L S M V - - - - - - - - - - - S A S A P P P P L Q S D A A G S - G E D A S K K V R K P Y T I T K S
 
AT1G01520.1     R E N W T E Q E H D K F L E A L H L F D R D W K K I K A F V G S K T V I Q I R S H A Q K Y F L K V Q K N G T K E H L P P
Sb027895_Sorbi1    R E S W T E Q E H D K F L E A L Q L F D R D W K K I E A F V G S K T V I Q I R S H A Q K Y F L K V Q K N G T S E H V P P
 
AT1G01520.1     P R P K R K A N H P Y P Q K A P K F T L S S S N A L F Q H D Y L Y N T N S H P V I S T T R K H G L - - - - - - - V H C D
Sb027895_Sorbi1    P R P K R K A A H P Y P Q K A S K - - - - - - - - - N E P N Y G L K T D S S - - - S I H R N S G M N V S V S S W A H S S
 
AT1G01520.1     V - - S I P S S V I K E E F G V S - - - - E N C C S T S S S R D K Q R T R I V T E T N D Q E S C G K P H R V A P N F A E
Sb027895_Sorbi1    I P Q A V A S T M V K E D L G A G T P G P N N F C S - S S T E G P P R T W Q P G E T N D Q I N Q V P S L R L M P D F A E
 
AT1G01520.1     V Y N F I G S V F D P K T T G H V K R L K E M D P I N L E T V L L L M K N L S V N L T S P E F D E Q R K L I S S Y N A S
Sb027895_Sorbi1    V Y S F L G S V F D P S T S G H L Q K L K E M N P I D V E T A L L L M R N L S I N L T S P D F E D Q R K L L S S Y S T S
 
AT1G01520.1     - - - - - - - - - - - - - - - - - - - -
Sb027895_Sorbi1    D G L Q L G S S R S S A L A M S T P F M
 
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