fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G01520.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm043731 not found in 332aa AT5G52660.2 1st_not 0.511864406 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G01520.1     MVTVNPSQAHCL----PMKMSLPGFNTLPHTATTIPVSIRSNRTMSFFEDPTKKVRKPYT
gm043731_Glyma1 MVSVNPNPAQGFYFFDPSNMTLPGVNNLPPPPPPAPAA------PSAVEDPNKKIRKPYT
                **:***. *: :    * :*:***.*.** .... *.:       * .***.**:*****

AT1G01520.1     ITKSRENWTEQEHDKFLEALHLFDRDWKKIKAFVGSKTVIQIRSHAQKYFLKVQKNGTKE
gm043731_Glyma1 ITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSE
                ******.*************:*********:***************************.*

AT1G01520.1     HLPPPRPKRKANHPYPQKAPKF--------TLSSSNALFQHDYLYNTNSHPVI-------
gm043731_Glyma1 HVPPPRPKRKAARPYPQKAPKTPTVSQVMGPLQSSSAFIEPAYIYSPDSSSVLGTPVTNM
                *:********* :********         .*.**.*:::  *:*..:* .*:       

AT1G01520.1     -------STTRKHGLVHCDVSIPSSVIKEEFGVSE-------NCCSTSSSRDKQRTRIVT
gm043731_Glyma1 PLSSWNYNTTPQPG------NVP-QVTRDDMGLTGAGQAAPLNCCYSSSNESTPPTWPRS
                       .** : *      .:* .* ::::*::        *** :**....  *   :

AT1G01520.1     ETNDQESCGKPHRVAPNFAEVYNFIGSVFDPKTTGHVKRLKEMDPINLETVLLLMKNLSV
gm043731_Glyma1 KRINQGDQGKPIKVMPDFAQVYSFIGSVFDPNSTNHLQKLQQMDPINVETVLLLMTNLSV
                :  :* . *** :* *:**:**.********::*.*:::*::*****:*******.****

AT1G01520.1     NLTSPEFDEQRKLISSYNAS-------------------------
gm043731_Glyma1 NLMSPEFEDHKRLLSSYDTDSDKSKFVNICSKSFTNKSESAVLSA
                ** ****:::::*:***::.
BoxShade v3.31 C (beta, 970507) Output
AT1G01520.1     M V T V N P S Q A H C L - - - - P M K M S L P G F N T L P H T A T T I P V S I R S N R T M S F F E D P T K K V R K P Y T
gm043731_Glyma1    M V S V N P N P A Q G F Y F F D P S N M T L P G V N N L P P P P P P A P A A - - - - - - P S A V E D P N K K I R K P Y T
 
AT1G01520.1     I T K S R E N W T E Q E H D K F L E A L H L F D R D W K K I K A F V G S K T V I Q I R S H A Q K Y F L K V Q K N G T K E
gm043731_Glyma1    I T K S R E S W T E Q E H D K F L E A L Q L F D R D W K K I E A F V G S K T V I Q I R S H A Q K Y F L K V Q K N G T S E
 
AT1G01520.1     H L P P P R P K R K A N H P Y P Q K A P K F - - - - - - - - T L S S S N A L F Q H D Y L Y N T N S H P V I - - - - - - -
gm043731_Glyma1    H V P P P R P K R K A A R P Y P Q K A P K T P T V S Q V M G P L Q S S S A F I E P A Y I Y S P D S S S V L G T P V T N M
 
AT1G01520.1     - - - - - - - S T T R K H G L V H C D V S I P S S V I K E E F G V S E - - - - - - - N C C S T S S S R D K Q R T R I V T
gm043731_Glyma1    P L S S W N Y N T T P Q P G - - - - - - N V P - Q V T R D D M G L T G A G Q A A P L N C C Y S S S N E S T P P T W P R S
 
AT1G01520.1     E T N D Q E S C G K P H R V A P N F A E V Y N F I G S V F D P K T T G H V K R L K E M D P I N L E T V L L L M K N L S V
gm043731_Glyma1    K R I N Q G D Q G K P I K V M P D F A Q V Y S F I G S V F D P N S T N H L Q K L Q Q M D P I N V E T V L L L M T N L S V
 
AT1G01520.1     N L T S P E F D E Q R K L I S S Y N A S - - - - - - - - - - - - - - - - - - - - - - - - -
gm043731_Glyma1    N L M S P E F E D H K R L L S S Y D T D S D K S K F V N I C S K S F T N K S E S A V L S A
 
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