fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G02040.1 PLDQPSLDLNLACQEY at 276/324 in AT1G02040.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm001365 SSEPLDLKLDLNLPAP in 325/371 AT1G02040.1 1st_1st 0.215073529 Ib
Pt017309 NSEPLDLTLDLNLPAH in 346/462 AT1G02040.1 1st_1st 0.238970588 Ib
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Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G02040.1     MH---VTRNVGKSQKLHH-----------VSLKQVLSYLEPH---------EQED-----
gm001365_Glyma0 MHTLFLSLSISHKNTLQGPLLVPLAGGATTTKSALGGHMRAHGIGDESGHMDDDDQASDW
pt017309_POPTR_ -----MALLVDQQPNFKH--FCKICKKGFMCGRALGGHMRAHGIGDENVNMEDEDPASDW
                     ::  :.:. .::                 : .::..*         :::*     

AT1G02040.1     -------------------TKP-------VTSTKNKGFLLFNSHQNTLNTHMHGAMNSPC
gm001365_Glyma0 EDRLGGNVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLE------HGKCTSED
pt017309_POPTR_ EDKLGATVPPGTRRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLE------HGRCTSED
                                   *:*       * .. .* ** ::*. :      **  .*  

AT1G02040.1     IDFVMFSR-GQHDEDNMSRRPPW--KRERSMS--TQHHHLNLSPNEDEELANCLVLLSNS
gm001365_Glyma0 AESL------------------------------VGSFNYNCPSSEEEDLANCLMMLSNA
pt017309_POPTR_ ADQLLVSSPGSDEEGGTPRRGCYWSKRKRSLRAKVGNFNSSCPSSEEEDLANCLMMLSNA
                 : :                              .  .: . ...*:*:*****::***:

AT1G02040.1     -------------GDAHGGDQ-------------------------HKQHGHGKGKTVKK
gm001365_Glyma0 IVDPLIAEPEESCASASKEEEQRRNPMNFIAPLSYKINNNNQHLVDNKAKGVAKG-----
pt017309_POPTR_ TVDPLEAEPEESCASASKEEE-RRNPLNFMAHVEYKPPL-------DKAKGIAKG-----
                             ..*   ::                         .* :* .**     

AT1G02040.1     QKTAQVFQCKACKKVFTSHQALGGHRASHKKVKGCFASQDKEEEEEEEYKEDD--DDNDE
gm001365_Glyma0 -----LFECKACKKVFNSHQALGGHRASHKKVKGCFAA-----------KLDN-LDDNIM
pt017309_POPTR_ -----MFECKACKKVFNSHQALGGHRASHKKVKGCYAA-----------RLDQGMEDSLA
                     :*:********.******************:*:           : *:  :*.  

AT1G02040.1     DEDEE---EDEEDKSTAHIARKRSNAHECTICHRVFSSGQALGGHKRCHWLTP-----SN
gm001365_Glyma0 --EDDVITHEDSNPSLASSSKRKPKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTST
pt017309_POPTR_ DHDEDFITNDEFFSTKSTSTLQFDHVHECSICHRVFSSGQALGGHKRCHWLTSNSPDTSS
                  :::   .::   : :  : :  :.***:**** ***************:*.     *.

AT1G02040.1     YLRMTSLHDHHHSVGR-P------QPLDQPSLDLNLACQEYSVDPTAMSVGM--------
gm001365_Glyma0 LTRFQPFQEHLDQI---PKFDTSSEPLDL-KLDLNLPA------PSN-------------
pt017309_POPTR_ FPKFHQFQDHLDQIQRRPKFINNSEPLDL-TLDLNLPAHPPVANPSNIAVSTEIYLQPWT
                  ::  :::* ..:   *      :***  .*****..      *:              

AT1G02040.1     ------------------IERDGGGNNHN-------------------------------
gm001365_Glyma0 ----------------------------------------------------DLARRNDM
pt017309_POPTR_ RVDAKVKDDNNHQHQNEKDHRDTKDNNNDDNNNYYSSVQNVNDEADSKVKLAKLSELKDM
                                                                            

AT1G02040.1     ---ATSSSWLKLASGDWS--------
gm001365_Glyma0 NTGGSSLPWLQVGIGSTATDVETDNC
pt017309_POPTR_ STSGSSSPWLQVGIGST-TDVRADQL
                   .:* .**::. *.
BoxShade v3.31 C (beta, 970507) Output
AT1G02040.1     M H - - - V T R N V G K S Q K L H H - - - - - - - - - - - V S L K Q V L S Y L E P H - - - - - - - - - E Q E D - - - - -
gm001365_Glyma0    M H T L F L S L S I S H K N T L Q G P L L V P L A G G A T T T K S A L G G H M R A H G I G D E S G H M D D D D Q A S D W
pt017309_POPTR_    - - - - - M A L L V D Q Q P N F K H - - F C K I C K K G F M C G R A L G G H M R A H G I G D E N V N M E D E D P A S D W
 
AT1G02040.1     - - - - - - - - - - - - - - - - - - - T K P - - - - - - - V T S T K N K G F L L F N S H Q N T L N T H M H G A M N S P C
gm001365_Glyma0    E D R L G G N V P P S N K R M Y A L R T N P N R L K S C R V C E N C G K E F L S W K S F L E - - - - - - H G K C T S E D
pt017309_POPTR_    E D K L G A T V P P G T R R M Y A L R T N P N R L K S C R V C E N C G K E F L S W K S F L E - - - - - - H G R C T S E D
 
AT1G02040.1     I D F V M F S R - G Q H D E D N M S R R P P W - - K R E R S M S - - T Q H H H L N L S P N E D E E L A N C L V L L S N S
gm001365_Glyma0    A E S L - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - V G S F N Y N C P S S E E E D L A N C L M M L S N A
pt017309_POPTR_    A D Q L L V S S P G S D E E G G T P R R G C Y W S K R K R S L R A K V G N F N S S C P S S E E E D L A N C L M M L S N A
 
AT1G02040.1     - - - - - - - - - - - - - G D A H G G D Q - - - - - - - - - - - - - - - - - - - - - - - - - H K Q H G H G K G K T V K K
gm001365_Glyma0    I V D P L I A E P E E S C A S A S K E E E Q R R N P M N F I A P L S Y K I N N N N Q H L V D N K A K G V A K G - - - - -
pt017309_POPTR_    T V D P L E A E P E E S C A S A S K E E E - R R N P L N F M A H V E Y K P P L - - - - - - - D K A K G I A K G - - - - -
 
AT1G02040.1     Q K T A Q V F Q C K A C K K V F T S H Q A L G G H R A S H K K V K G C F A S Q D K E E E E E E E Y K E D D - - D D N D E
gm001365_Glyma0    - - - - - L F E C K A C K K V F N S H Q A L G G H R A S H K K V K G C F A A - - - - - - - - - - - K L D N - L D D N I M
pt017309_POPTR_    - - - - - M F E C K A C K K V F N S H Q A L G G H R A S H K K V K G C Y A A - - - - - - - - - - - R L D Q G M E D S L A
 
AT1G02040.1     D E D E E - - - E D E E D K S T A H I A R K R S N A H E C T I C H R V F S S G Q A L G G H K R C H W L T P - - - - - S N
gm001365_Glyma0    - - E D D V I T H E D S N P S L A S S S K R K P K V H E C S I C H R S F S S G Q A L G G H K R C H W I T S N A P D T S T
pt017309_POPTR_    D H D E D F I T N D E F F S T K S T S T L Q F D H V H E C S I C H R V F S S G Q A L G G H K R C H W L T S N S P D T S S
 
AT1G02040.1     Y L R M T S L H D H H H S V G R - P - - - - - - Q P L D Q P S L D L N L A C Q E Y S V D P T A M S V G M - - - - - - - -
gm001365_Glyma0    L T R F Q P F Q E H L D Q I - - - P K F D T S S E P L D L - K L D L N L P A - - - - - - P S N - - - - - - - - - - - - -
pt017309_POPTR_    F P K F H Q F Q D H L D Q I Q R R P K F I N N S E P L D L - T L D L N L P A H P P V A N P S N I A V S T E I Y L Q P W T
 
AT1G02040.1     - - - - - - - - - - - - - - - - - - I E R D G G G N N H N - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm001365_Glyma0    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - D L A R R N D M
pt017309_POPTR_    R V D A K V K D D N N H Q H Q N E K D H R D T K D N N N D D N N N Y Y S S V Q N V N D E A D S K V K L A K L S E L K D M
 
AT1G02040.1     - - - A T S S S W L K L A S G D W S - - - - - - - -
gm001365_Glyma0    N T G G S S L P W L Q V G I G S T A T D V E T D N C
pt017309_POPTR_    S T S G S S S P W L Q V G I G S T - T D V R A D Q L
 
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