fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G02040.1 PLDQPSLDLNLACQEY at 276/324 in AT1G02040.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt017309 NSEPLDLTLDLNLPAH in 346/462 AT1G02040.1 1st_1st 0.238970588 Ib
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G02040.1     ---------------------MHVTRNVGKSQKLHHVSLKQVLSYLEPHEQEDTKPVTST
pt017309_POPTR_ MALLVDQQPNFKHFCKICKKGFMCGRALGGHMRAHGIGDENV-------NMEDEDPASDW
                                     :   * :*   : * :. ::*       : ** .*.:. 

AT1G02040.1     KNK----------GFLLFNSHQNTLNTHM-----------------HGAMNSPCIDFVMF
pt017309_POPTR_ EDKLGATVPPGTRRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGRCTSEDADQLLV
                ::*           :  :.:: * *::                   **  .*   * ::.

AT1G02040.1     SR-GQHDEDNMSRRPPW--KRERSMSTQHHHLNLS--PNEDEELANCLVLLSNS------
pt017309_POPTR_ SSPGSDEEGGTPRRGCYWSKRKRSLRAKVGNFNSSCPSSEEEDLANCLMMLSNATVDPLE
                *  *..:*.. .**  :  **:**: ::  ::* *  ..*:*:*****::***:      

AT1G02040.1     -------GDAHGGDQHKQ------HGHGKGKTVKKQKTAQ-VFQCKACKKVFTSHQALGG
pt017309_POPTR_ AEPEESCASASKEEERRNPLNFMAHVEYKPPLDKAKGIAKGMFECKACKKVFNSHQALGG
                       ..*   :::::      * . *    * :  *: :*:********.*******

AT1G02040.1     HRASHKKVKGCFASQDKEEEEEEEYKEDDDDNDEDEDEEEDEE---DKSTAHIARKRSNA
pt017309_POPTR_ HRASHKKVKGCYAARLDQGME-------DSLADHDEDFITNDEFFSTKSTSTL--QFDHV
                ***********:*:: .:  *       *.  *.***   ::*    ***: :  : .:.

AT1G02040.1     HECTICHRVFSSGQALGGHKRCHWLTP-----SNYLRMTSLHDHHHSVGR-------PQP
pt017309_POPTR_ HECSICHRVFSSGQALGGHKRCHWLTSNSPDTSSFPKFHQFQDHLDQIQRRPKFINNSEP
                ***:**********************.     *.: :: .::** ..: *       .:*

AT1G02040.1     LDQPSLDLNLACQEYSVDPTAMSVGM--------------------------IERDGGGN
pt017309_POPTR_ LDL-TLDLNLPAHPPVANPSNIAVSTEIYLQPWTRVDAKVKDDNNHQHQNEKDHRDTKDN
                **  :*****..:   .:*: ::*.                            .**  .*

AT1G02040.1     NHN----------------------------------ATSSSWLKLASGDWS-------
pt017309_POPTR_ NNDDNNNYYSSVQNVNDEADSKVKLAKLSELKDMSTSGSSSPWLQVGIGSTTDVRADQL
                *::                                  .:**.**::. *. :
BoxShade v3.31 C (beta, 970507) Output
AT1G02040.1     - - - - - - - - - - - - - - - - - - - - - M H V T R N V G K S Q K L H H V S L K Q V L S Y L E P H E Q E D T K P V T S T
pt017309_POPTR_    M A L L V D Q Q P N F K H F C K I C K K G F M C G R A L G G H M R A H G I G D E N V - - - - - - - N M E D E D P A S D W
 
AT1G02040.1     K N K - - - - - - - - - - G F L L F N S H Q N T L N T H M - - - - - - - - - - - - - - - - - H G A M N S P C I D F V M F
pt017309_POPTR_    E D K L G A T V P P G T R R M Y A L R T N P N R L K S C R V C E N C G K E F L S W K S F L E H G R C T S E D A D Q L L V
 
AT1G02040.1     S R - G Q H D E D N M S R R P P W - - K R E R S M S T Q H H H L N L S - - P N E D E E L A N C L V L L S N S - - - - - -
pt017309_POPTR_    S S P G S D E E G G T P R R G C Y W S K R K R S L R A K V G N F N S S C P S S E E E D L A N C L M M L S N A T V D P L E
 
AT1G02040.1     - - - - - - - G D A H G G D Q H K Q - - - - - - H G H G K G K T V K K Q K T A Q - V F Q C K A C K K V F T S H Q A L G G
pt017309_POPTR_    A E P E E S C A S A S K E E E R R N P L N F M A H V E Y K P P L D K A K G I A K G M F E C K A C K K V F N S H Q A L G G
 
AT1G02040.1     H R A S H K K V K G C F A S Q D K E E E E E E E Y K E D D D D N D E D E D E E E D E E - - - D K S T A H I A R K R S N A
pt017309_POPTR_    H R A S H K K V K G C Y A A R L D Q G M E - - - - - - - D S L A D H D E D F I T N D E F F S T K S T S T L - - Q F D H V
 
AT1G02040.1     H E C T I C H R V F S S G Q A L G G H K R C H W L T P - - - - - S N Y L R M T S L H D H H H S V G R - - - - - - - P Q P
pt017309_POPTR_    H E C S I C H R V F S S G Q A L G G H K R C H W L T S N S P D T S S F P K F H Q F Q D H L D Q I Q R R P K F I N N S E P
 
AT1G02040.1     L D Q P S L D L N L A C Q E Y S V D P T A M S V G M - - - - - - - - - - - - - - - - - - - - - - - - - - I E R D G G G N
pt017309_POPTR_    L D L - T L D L N L P A H P P V A N P S N I A V S T E I Y L Q P W T R V D A K V K D D N N H Q H Q N E K D H R D T K D N
 
AT1G02040.1     N H N - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - A T S S S W L K L A S G D W S - - - - - - -
pt017309_POPTR_    N N D D N N N Y Y S S V Q N V N D E A D S K V K L A K L S E L K D M S T S G S S S P W L Q V G I G S T T D V R A D Q L
 
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