fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G03040.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt040111 not found in 300aa AT4G02590.2 not_not 0.596226415 III
Pt002016 not found in 331aa AT4G02590.2 not_not 0.413207547 III
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G03040.1     MANNNNIPHDSISDPSPT---DDFFEQILGLSNFSGSSG------SGLSGIGGVGPPPMM
pt040111_POPTR_ MANNPTEP--------PT---DDFLQEILGMPNFASAEAGLVGADAGLAGTASV-QAPMM
pt002016_POPTR_ MAGNP--P--------PEGLGDDFFEQIL-----AGQPPG-----YGGEAVGST-SLPMM
                **.*   *        *    ***:::**     :.          *  . ...   ***

AT1G03040.1     -LQLGSG-------NEGNH-NHMGAIGGGGPVGFHNQMFPLGLSLDQGKGHGFLKPDE--
pt040111_POPTR_ -LQLSSG-------DGSGHISALGGAPGGGGAGFHG--FPLGLSLEQGKG-GFLKPEEA-
pt002016_POPTR_ GLQLGSSAANVGLMRSSAN-NNMG-------------MMPLGLNLEH---HGFLRQQQDD
                 ***.*.         . : . :*              :****.*::    ***: ::  

AT1G03040.1     -----------------------TGKRFQDDVLDNRC----------SSMKPI-------
pt040111_POPTR_ ---------------------SGSGNRFRDDIVDGR-------------VRNV-------
pt002016_POPTR_ GSSSLDTNNSNNINNASPFSITSAGFLGRDSVHMTSLFPTFGQLQIHSSIRSAPPPLGPP
                                       :*   :*.:                 ::         

AT1G03040.1     ----FHGQPMSQPAPPMPHQQSTIRPRVRARRGQATDPHSIAERLRRERIAERIRSLQEL
pt040111_POPTR_ ----FHGQPMPTTVTAATHPPA-MRPRVRARRGQATDPHSIAERLRRERIAERIRALQEL
pt002016_POPTR_ QIHQFNSQPTSGAVSAVPQPPG-IRPRVRARRGQATDPHSIAERLRRVRITERVKALQEL
                    *:.** . .... .:  . :*********************** **:**:::****

AT1G03040.1     VPTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTEMPLSSSVEDET--
pt040111_POPTR_ VPSVNKTDRAAMLDEIVDYVKFLRLQVKILSMSRLGGAGAVAPLVTDIPL-SPVEDETGE
pt002016_POPTR_ VPTCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGAAGAVAQLVADVPL-SSVQGEGIE
                **: ********:***************:*******.***** **:::** *.*:.*   

AT1G03040.1     ----QAVWEKWSNDGTERQVAKLMEENVGAAMQLLQSKALCIMPISLAMAIYHSQPPDTS
pt040111_POPTR_ GGRNQLAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPITLATAIYHTQPPDT-
pt002016_POPTR_ GGANQQAWENWSNDGTEQEVAKLMEEDVGAAMQLLQSKALCIMPVSLASAIFRARPPNA-
                    * .**:*******::*******:******:**********::** **::::**:: 

AT1G03040.1     SSIVKPEMNPPP
pt040111_POPTR_ TTIVKPETNPPS
pt002016_POPTR_ PTLVKPESNPPS
                .::**** ***.
BoxShade v3.31 C (beta, 970507) Output
AT1G03040.1     M A N N N N I P H D S I S D P S P T - - - D D F F E Q I L G L S N F S G S S G - - - - - - S G L S G I G G V G P P P M M
pt040111_POPTR_    M A N N P T E P - - - - - - - - P T - - - D D F L Q E I L G M P N F A S A E A G L V G A D A G L A G T A S V - Q A P M M
pt002016_POPTR_    M A G N P - - P - - - - - - - - P E G L G D D F F E Q I L - - - - - A G Q P P G - - - - - Y G G E A V G S T - S L P M M
 
AT1G03040.1     - L Q L G S G - - - - - - - N E G N H - N H M G A I G G G G P V G F H N Q M F P L G L S L D Q G K G H G F L K P D E - -
pt040111_POPTR_    - L Q L S S G - - - - - - - D G S G H I S A L G G A P G G G G A G F H G - - F P L G L S L E Q G K G - G F L K P E E A -
pt002016_POPTR_    G L Q L G S S A A N V G L M R S S A N - N N M G - - - - - - - - - - - - - M M P L G L N L E H - - - H G F L R Q Q Q D D
 
AT1G03040.1     - - - - - - - - - - - - - - - - - - - - - - - T G K R F Q D D V L D N R C - - - - - - - - - - S S M K P I - - - - - - -
pt040111_POPTR_    - - - - - - - - - - - - - - - - - - - - - S G S G N R F R D D I V D G R - - - - - - - - - - - - - V R N V - - - - - - -
pt002016_POPTR_    G S S S L D T N N S N N I N N A S P F S I T S A G F L G R D S V H M T S L F P T F G Q L Q I H S S I R S A P P P L G P P
 
AT1G03040.1     - - - - F H G Q P M S Q P A P P M P H Q Q S T I R P R V R A R R G Q A T D P H S I A E R L R R E R I A E R I R S L Q E L
pt040111_POPTR_    - - - - F H G Q P M P T T V T A A T H P P A - M R P R V R A R R G Q A T D P H S I A E R L R R E R I A E R I R A L Q E L
pt002016_POPTR_    Q I H Q F N S Q P T S G A V S A V P Q P P G - I R P R V R A R R G Q A T D P H S I A E R L R R V R I T E R V K A L Q E L
 
AT1G03040.1     V P T V N K T D R A A M I D E I V D Y V K F L R L Q V K V L S M S R L G G A G A V A P L V T E M P L S S S V E D E T - -
pt040111_POPTR_    V P S V N K T D R A A M L D E I V D Y V K F L R L Q V K I L S M S R L G G A G A V A P L V T D I P L - S P V E D E T G E
pt002016_POPTR_    V P T C N K T D R A A M L D E I V D Y V K F L R L Q V K V L S M S R L G A A G A V A Q L V A D V P L - S S V Q G E G I E
 
AT1G03040.1     - - - - Q A V W E K W S N D G T E R Q V A K L M E E N V G A A M Q L L Q S K A L C I M P I S L A M A I Y H S Q P P D T S
pt040111_POPTR_    G G R N Q L A W E K W S N D G T E R Q V A K L M E E N V G A A M Q F L Q S K A L C I M P I T L A T A I Y H T Q P P D T -
pt002016_POPTR_    G G A N Q Q A W E N W S N D G T E Q E V A K L M E E D V G A A M Q L L Q S K A L C I M P V S L A S A I F R A R P P N A -
 
AT1G03040.1     S S I V K P E M N P P P
pt040111_POPTR_    T T I V K P E T N P P S
pt002016_POPTR_    P T L V K P E S N P P S
 
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