fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G03040.1 not found
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt001062 not found in 300aa AT4G02590.2 1st_not 0.601886792 II
Pt040111 not found in 300aa AT4G02590.2 not_not 0.596226415 III
Pt002016 not found in 331aa AT4G02590.2 not_not 0.413207547 III
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Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G03040.1     MANNNNIPHDSISDPSPT---DDFFEQIL-GLSNFSGSSG------SGLSGIGGVGPPPM
pt001062_POPTR_ MANNPTEP--------PT---DDFLQEIL-GMPNFASAEAGLVGADAGLAGAAAA-QASM
pt002016_POPTR_ MAGNP--P--------PEGLGDDFFEQILAGQPPGYGGEA-----------VGST-SLPM
pt040111_POPTR_ MANNPTEP--------PT---DDFLQEIL-GMPNFASAEAGLVGADAGLAGTASV-QAPM
                **.*   *        *    ***:::** * .   ....            ...   .*

AT1G03040.1     M-LQLGSG-------NEGNH-NHMGAIGGGGPVGFHNQMFPLGLSLDQGKGHGFLKPDE-
pt001062_POPTR_ M-LQLSSG-------DGSGHISDLGGAPGGGSAGFHG--FPLGLSLEQGKG-GFLKPEEA
pt002016_POPTR_ MGLQLGSSAANVGLMRSSAN-NNMG-------------MMPLGLNLEH---HGFLRQQQD
pt040111_POPTR_ M-LQLSSG-------DGSGHISALGGAPGGGGAGFHG--FPLGLSLEQGKG-GFLKPEEA
                * ***.*.         . : . :*              :****.*::    ***: :: 

AT1G03040.1     ------------------------TGKRFQDDVLDNRC----------SSMKPI------
pt001062_POPTR_ SG----------------------SGKRFRDEIVDGR-------------AKNV------
pt002016_POPTR_ DGSSSLDTNNSNNINNASPFSITSAGFLGRDSVHMTSLFPTFGQLQIHSSIRSAPPPLGP
pt040111_POPTR_ SG----------------------SGNRFRDDIVDGR-------------VRNV------
                                        :*   :*.:                  :        

AT1G03040.1     -----FHGQPMSQPAPPMPHQQSTIRPRVRARRGQATDPHSIAERLRRERIAERIRSLQE
pt001062_POPTR_ -----FHGQPMPTTVAIAPHPPA-MRPRVRARRGQATDPHSIAERLRRERIAERIRALQE
pt002016_POPTR_ PQIHQFNSQPTSGAVSAVPQPPG-IRPRVRARRGQATDPHSIAERLRRVRITERVKALQE
pt040111_POPTR_ -----FHGQPMPTTVTAATHPPA-MRPRVRARRGQATDPHSIAERLRRERIAERIRALQE
                     *:.** . ...  .:  . :*********************** **:**:::***

AT1G03040.1     LVPTVNKTDRAAMIDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTEMPLSSSVEDET-
pt001062_POPTR_ LVPSVNKTDRATMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPL-SSVEDETG
pt002016_POPTR_ LVPTCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGAAGAVAQLVADVPL-SSVQGEGI
pt040111_POPTR_ LVPSVNKTDRAAMLDEIVDYVKFLRLQVKILSMSRLGGAGAVAPLVTDIPL-SPVEDETG
                ***: ******:*:***************:*******.***** **:::** *.*:.*  

AT1G03040.1     -----QAVWEKWSNDGTERQVAKLMEENVGAAMQLLQSKALCIMPISLAMAIYHSQPPDT
pt001062_POPTR_ EGGRNQPAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLATAIYHTQPPDT
pt002016_POPTR_ EGGANQQAWENWSNDGTEQEVAKLMEEDVGAAMQLLQSKALCIMPVSLASAIFRARPPNA
pt040111_POPTR_ EGGRNQLAWEKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPITLATAIYHTQPPDT
                     * .**:*******::*******:******:**********::** **::::**::

AT1G03040.1     SSSIVKPEMNPPP
pt001062_POPTR_ -TTIVKPETNPPS
pt002016_POPTR_ -PTLVKPESNPPS
pt040111_POPTR_ -TTIVKPETNPPS
                 .::**** ***.
BoxShade v3.31 C (beta, 970507) Output
AT1G03040.1     M A N N N N I P H D S I S D P S P T - - - D D F F E Q I L - G L S N F S G S S G - - - - - - S G L S G I G G V G P P P M
pt001062_POPTR_    M A N N P T E P - - - - - - - - P T - - - D D F L Q E I L - G M P N F A S A E A G L V G A D A G L A G A A A A - Q A S M
pt002016_POPTR_    M A G N P - - P - - - - - - - - P E G L G D D F F E Q I L A G Q P P G Y G G E A - - - - - - - - - - - V G S T - S L P M
pt040111_POPTR_    M A N N P T E P - - - - - - - - P T - - - D D F L Q E I L - G M P N F A S A E A G L V G A D A G L A G T A S V - Q A P M
 
AT1G03040.1     M - L Q L G S G - - - - - - - N E G N H - N H M G A I G G G G P V G F H N Q M F P L G L S L D Q G K G H G F L K P D E -
pt001062_POPTR_    M - L Q L S S G - - - - - - - D G S G H I S D L G G A P G G G S A G F H G - - F P L G L S L E Q G K G - G F L K P E E A
pt002016_POPTR_    M G L Q L G S S A A N V G L M R S S A N - N N M G - - - - - - - - - - - - - M M P L G L N L E H - - - H G F L R Q Q Q D
pt040111_POPTR_    M - L Q L S S G - - - - - - - D G S G H I S A L G G A P G G G G A G F H G - - F P L G L S L E Q G K G - G F L K P E E A
 
AT1G03040.1     - - - - - - - - - - - - - - - - - - - - - - - - T G K R F Q D D V L D N R C - - - - - - - - - - S S M K P I - - - - - -
pt001062_POPTR_    S G - - - - - - - - - - - - - - - - - - - - - - S G K R F R D E I V D G R - - - - - - - - - - - - - A K N V - - - - - -
pt002016_POPTR_    D G S S S L D T N N S N N I N N A S P F S I T S A G F L G R D S V H M T S L F P T F G Q L Q I H S S I R S A P P P L G P
pt040111_POPTR_    S G - - - - - - - - - - - - - - - - - - - - - - S G N R F R D D I V D G R - - - - - - - - - - - - - V R N V - - - - - -
 
AT1G03040.1     - - - - - F H G Q P M S Q P A P P M P H Q Q S T I R P R V R A R R G Q A T D P H S I A E R L R R E R I A E R I R S L Q E
pt001062_POPTR_    - - - - - F H G Q P M P T T V A I A P H P P A - M R P R V R A R R G Q A T D P H S I A E R L R R E R I A E R I R A L Q E
pt002016_POPTR_    P Q I H Q F N S Q P T S G A V S A V P Q P P G - I R P R V R A R R G Q A T D P H S I A E R L R R V R I T E R V K A L Q E
pt040111_POPTR_    - - - - - F H G Q P M P T T V T A A T H P P A - M R P R V R A R R G Q A T D P H S I A E R L R R E R I A E R I R A L Q E
 
AT1G03040.1     L V P T V N K T D R A A M I D E I V D Y V K F L R L Q V K V L S M S R L G G A G A V A P L V T E M P L S S S V E D E T -
pt001062_POPTR_    L V P S V N K T D R A T M L D E I V D Y V K F L R L Q V K V L S M S R L G G A G A V A P L V T D I P L - S S V E D E T G
pt002016_POPTR_    L V P T C N K T D R A A M L D E I V D Y V K F L R L Q V K V L S M S R L G A A G A V A Q L V A D V P L - S S V Q G E G I
pt040111_POPTR_    L V P S V N K T D R A A M L D E I V D Y V K F L R L Q V K I L S M S R L G G A G A V A P L V T D I P L - S P V E D E T G
 
AT1G03040.1     - - - - - Q A V W E K W S N D G T E R Q V A K L M E E N V G A A M Q L L Q S K A L C I M P I S L A M A I Y H S Q P P D T
pt001062_POPTR_    E G G R N Q P A W E K W S N D G T E R Q V A K L M E E N V G A A M Q F L Q S K A L C I M P I S L A T A I Y H T Q P P D T
pt002016_POPTR_    E G G A N Q Q A W E N W S N D G T E Q E V A K L M E E D V G A A M Q L L Q S K A L C I M P V S L A S A I F R A R P P N A
pt040111_POPTR_    E G G R N Q L A W E K W S N D G T E R Q V A K L M E E N V G A A M Q F L Q S K A L C I M P I T L A T A I Y H T Q P P D T
 
AT1G03040.1     S S S I V K P E M N P P P
pt001062_POPTR_    - T T I V K P E T N P P S
pt002016_POPTR_    - P T L V K P E S N P P S
pt040111_POPTR_    - T T I V K P E T N P P S
 
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