fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G04240.1 NLKETELRLGLPGTDN at 10/189 in AT1G04240.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt001236 NLEATELRLGLPGTAT in 13/201 AT5G43700.1 1st_not 0.592405063 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G04240.1     --MDEFVNLKETELRLGLPGTDNVCEAKERVSCCNN---NNKRVL---STDTEKEIESS-
pt001236_POPTR_ MEFERDLNLEATELRLGLPGT--ATEQLEKQTPNSNVTKSNKRSLPDMNEDSAGRRESSS
                  ::. :**: **********  . *  *: :  .*   .*** *   . *:  . *** 

AT1G04240.1     -------SRKTETSPPRKAQIVGWPPVRSYRKNNIQSKKNESEHEGQGIYVKVSMDGAPY
pt001236_POPTR_ VSSNDKKSHEQETAPPTKTQVVGWPPIRSYRKNCLQARKLEA--EAAGLYVKVSMDGAPY
                       *:: **:** *:*:*****:****** :*::* *:  *. *:***********

AT1G04240.1     LRKIDLSCYKGYSELLKALEVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPW
pt001236_POPTR_ LRKIDLKVYKGYPELLEVVEEMFKFKVGEYSEREGYNGSEYVPTYEDKDGDWMLVGDVPW
                ******. ****.***:.:* ****.**** **:**:**::*************:*****

AT1G04240.1     EMFICTCKRLRIMKGSEAKGLGCGV
pt001236_POPTR_ EMFINSCKRLRIMKESEARGLGCAV
                **** :******** ***:****.*
BoxShade v3.31 C (beta, 970507) Output
AT1G04240.1     - - M D E F V N L K E T E L R L G L P G T D N V C E A K E R V S C C N N - - - N N K R V L - - - S T D T E K E I E S S -
pt001236_POPTR_    M E F E R D L N L E A T E L R L G L P G T - - A T E Q L E K Q T P N S N V T K S N K R S L P D M N E D S A G R R E S S S
 
AT1G04240.1     - - - - - - - S R K T E T S P P R K A Q I V G W P P V R S Y R K N N I Q S K K N E S E H E G Q G I Y V K V S M D G A P Y
pt001236_POPTR_    V S S N D K K S H E Q E T A P P T K T Q V V G W P P I R S Y R K N C L Q A R K L E A - - E A A G L Y V K V S M D G A P Y
 
AT1G04240.1     L R K I D L S C Y K G Y S E L L K A L E V M F K F S V G E Y F E R D G Y K G S D F V P T Y E D K D G D W M L I G D V P W
pt001236_POPTR_    L R K I D L K V Y K G Y P E L L E V V E E M F K F K V G E Y S E R E G Y N G S E Y V P T Y E D K D G D W M L V G D V P W
 
AT1G04240.1     E M F I C T C K R L R I M K G S E A K G L G C G V
pt001236_POPTR_    E M F I N S C K R L R I M K E S E A R G L G C A V
 
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