fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G04240.1 NLKETELRLGLPGTDN at 10/189 in AT1G04240.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Os041780 NLKATELRLGLPGTEE in 8/197 AT1G04240.1 1st_1st 0.440506329 Ia
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G04240.1     MDEFVNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETSPP
Os041780_Os12t0 ---MENLKATELRLGLPGTEE--EAAPPPSTPRAGSKRALAGEPDQA------KIKPAAA
                   : *** **********::  **    *  . ..**.*: :.::       * :.:..

AT1G04240.1     RKAQIVGWPPVRSYRKNNIQ------------------SKKNESEHEGQGIYVKVSMDGA
Os041780_Os12t0 AKAQVVGWPPVRSYRKSCLQPTTTTTKSKPPPAAAAAETQQKEDVAGAGGLFVKVSMDGA
                 ***:***********. :*                  ::::*.   . *::********

AT1G04240.1     PYLRKIDLSCYKGYSELLKALEVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDV
Os041780_Os12t0 PYLRKIDLKVYKGYRELREALEAMFLCFSGGAAADAAVNPSDFAVTYEDKDGDLMLVGDV
                ********. **** ** :***.**    *      . : ***. ******** **:***

AT1G04240.1     PWEMFICTCKRLRIMKGSEAKGLGCGV-
Os041780_Os12t0 PFEMFISTCKRLRIMKGSEARGLGATRG
                *:****.*************:***.
BoxShade v3.31 C (beta, 970507) Output
AT1G04240.1     M D E F V N L K E T E L R L G L P G T D N V C E A K E R V S C C N N N N K R V L S T D T E K E I E S S S R K T E T S P P
Os041780_Os12t0    - - - M E N L K A T E L R L G L P G T E E - - E A A P P P S T P R A G S K R A L A G E P D Q A - - - - - - K I K P A A A
 
AT1G04240.1     R K A Q I V G W P P V R S Y R K N N I Q - - - - - - - - - - - - - - - - - - S K K N E S E H E G Q G I Y V K V S M D G A
Os041780_Os12t0    A K A Q V V G W P P V R S Y R K S C L Q P T T T T T K S K P P P A A A A A E T Q Q K E D V A G A G G L F V K V S M D G A
 
AT1G04240.1     P Y L R K I D L S C Y K G Y S E L L K A L E V M F K F S V G E Y F E R D G Y K G S D F V P T Y E D K D G D W M L I G D V
Os041780_Os12t0    P Y L R K I D L K V Y K G Y R E L R E A L E A M F L C F S G G A A A D A A V N P S D F A V T Y E D K D G D L M L V G D V
 
AT1G04240.1     P W E M F I C T C K R L R I M K G S E A K G L G C G V -
Os041780_Os12t0    P F E M F I S T C K R L R I M K G S E A R G L G A T R G
 
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