fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G04250.1 NLRETELCLGLPGGDT at 12/229 in AT1G04250.1
FSETVDLKLNLNNEPA at 38/229 in AT1G04250.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Pt042254 NYKETELCLGLPGAVG in 19/248 AT4G14550.1 1st_not 0.619266055 II
FAETVDLKLNLQAKEG in 51/248
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-1 (v7.475)


AT1G04250.1     MMGSV------ELNLRETELCLGLPGG-------DTVAPVTGNKRGFSETVDLKLNLNNE
pt042254_POPTR_ MTTSVLGTERTDLNYKETELCLGLPGAVGAKNEVETPNKATG-KRGFAETVDLKLNLQ--
                *  **      :** :**********.       :*   .** ****:*********:  

AT1G04250.1     PANKEG--STTHDVVTFDSKEKSACP----KDPAKPPAKAQVVGWPPVRSYRKNVMVS--
pt042254_POPTR_ --AKEGVMDLNENIKNITSKDKNHLPAVTIKDPAKPPAKAQVVGWPPVRSYRKNVMAQKN
                   ***  . ..:: .: **:*.  *    **************************..  

AT1G04250.1     ----CQKSSGGPEAAAFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGG
pt042254_POPTR_ ASEEGEKASTGGSSAAFVKVCMDGAPYLRKVDLKMYRSYQELSDALAKMFSSFTMGNYGA
                     :*:* * .:******.*********:**:**:**:***:**::********::*.

AT1G04250.1     EEGMIDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAI
pt042254_POPTR_ -QGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVNSCKRLRIMKGSEAI
                 :******** *****:** :******************** ***::*****:****:**

AT1G04250.1     GLAPRAMEKCKSRA
pt042254_POPTR_ GLAPRAMEKCKSRT
                *************:
BoxShade v3.31 C (beta, 970507) Output
AT1G04250.1     M M G S V - - - - - - E L N L R E T E L C L G L P G G - - - - - - - D T V A P V T G N K R G F S E T V D L K L N L N N E
pt042254_POPTR_    M T T S V L G T E R T D L N Y K E T E L C L G L P G A V G A K N E V E T P N K A T G - K R G F A E T V D L K L N L Q - -
 
AT1G04250.1     P A N K E G - - S T T H D V V T F D S K E K S A C P - - - - K D P A K P P A K A Q V V G W P P V R S Y R K N V M V S - -
pt042254_POPTR_    - - A K E G V M D L N E N I K N I T S K D K N H L P A V T I K D P A K P P A K A Q V V G W P P V R S Y R K N V M A Q K N
 
AT1G04250.1     - - - - C Q K S S G G P E A A A F V K V S M D G A P Y L R K I D L R M Y K S Y D E L S N A L S N M F S S F T M G K H G G
pt042254_POPTR_    A S E E G E K A S T G G S S A A F V K V C M D G A P Y L R K V D L K M Y R S Y Q E L S D A L A K M F S S F T M G N Y G A
 
AT1G04250.1     E E G M I D F M N E R K L M D L V N S W D Y V P S Y E D K D G D W M L V G D V P W P M F V D T C K R L R L M K G S D A I
pt042254_POPTR_    - Q G M I D F M N E S K L M D L L N S S E Y V P S Y E D K D G D W M L V G D V P W E M F V N S C K R L R I M K G S E A I
 
AT1G04250.1     G L A P R A M E K C K S R A
pt042254_POPTR_    G L A P R A M E K C K S R T
 
0