fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G04250.1 NLRETELCLGLPGGDT at 12/229 in AT1G04250.1
FSETVDLKLNLNNEPA at 38/229 in AT1G04250.1
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm055369 NLKETELCLGLPGGGG in 76/306 AT4G14550.1 1st_not 0.610091743 II
FSETVDLKLNLHSKED in 115/306
Gm040791 NLKETELTLGLPGTKT in 16/189 AT1G04250.1 not_1st 0.415137614 II
Gm040794 NLKETELTLGLPGTKT in 16/188 AT1G04250.1 not_1st 0.410550458 II
Gm040793 NLKETELTLGLPGTKT in 16/187 AT1G04250.1 not_1st 0.408256880 II
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Get formatted file made by BOXSHADE
Sequence file prepared (1 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G04250.1     ------------------------------------------------------------
gm040793_Glyma1 ------------------------------------------------------------
gm055369_Glyma2 MTAKQTKQHYNRKRTQSEREGSYSHKEKNFQRGESKRVLLFLFYIYLGAKLCEFIDKPEM
gm040794_Glyma1 ------------------------------------------------------------
gm040791_Glyma1 ------------------------------------------------------------
                                                                            

AT1G04250.1     -MMGSVE----LNLRETELCLGLP-------------GGDTVAPVTGNKRGFSETVDLKL
gm040793_Glyma1 --MSSESHAVDCNLKETELTLGLPG-----------------TKTTATKRGFSDTLP---
gm055369_Glyma2 ATMLTKEH--GLNLKETELCLGLPGGGGGGGGGGGGGGGEVETPRATGKRGFSETVDLKL
gm040794_Glyma1 --MSSESHAVDCNLKETELTLGLPG-----------------TKTTATKRGFSDTLP---
gm040791_Glyma1 --MSSESHAVDCNLKETELTLGLPG-----------------TKTTATKRGFSDTLP---
                  * : .     **:**** ****                  :  :  *****:*:    

AT1G04250.1     NLNN-EPANKEGSTTHDVVTFDSKEKSACPKDPAKPPAKAQVVGWPPVRSYRKNVM----
gm040793_Glyma1 ---------------------PSQNKILRPTSKFPTP-KEQLVGWPPVRASRKNAM----
gm055369_Glyma2 NLHSKEDLNENLKNV-------SKEKTLL-KDPAKPPAKAQVVGWPPVRSYRKNMMAVQK
gm040794_Glyma1 ---------------------PSQNKILRPTSKFPTP-KEQLVGWPPVRASRKNAM----
gm040791_Glyma1 ---------------------PSQNKILRPTSKFPTPNREQLVGWPPVRASRKNAM----
                                      *::*    ..   .* : *:*******: *** *    

AT1G04250.1     -----VSCQKSSGGPEAAAFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGK
gm040793_Glyma1 -----KSCCK---------LVKVAVDGAPYLRKVDLDMYDSYEHLMRELETMFCGLAIRN
gm055369_Glyma2 VSTEDVAEKTTSSTANPGAFVKVSMDGAPYLRKVDLTMYKSYKELSDALAKMFSSFTMGN
gm040794_Glyma1 -----KSCCK---------LVKVAVDGAPYLRKVDLDMYDSYEHLMRELETMFCGLAIRN
gm040791_Glyma1 -----KSCCK---------LVKVAVDGAPYLRKVDLDMYDSYEHLMRELETMFCGLAIRN
                      :  .         :***::********:** **.**..*   * .**..::: :

AT1G04250.1     HGGEEGMIDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGS
gm040793_Glyma1 H--------LMNERKLMDPGNGIEYMPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMISS
gm055369_Glyma2 YGA-QGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGS
gm040794_Glyma1 H--------LMNERKLMDPGNGIEYMPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMISS
gm040791_Glyma1 H--------LMNERKLMDPGNGIEYMPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMISS
                :        :*** ****  *. :*:*:**************** ***::***:*:* .*

AT1G04250.1     DAIGLAPRAM-EKCKSRA
gm040793_Glyma1 EAVGLG-SSTSSKCTGST
gm055369_Glyma2 EAIGLAPRAM-EKCKSRS
gm040794_Glyma1 EAVGLGPRSTSSKCTGST
gm040791_Glyma1 EAVGLGPRSTSSKCTGST
                :*:**.  :  .**.. :
BoxShade v3.31 C (beta, 970507) Output
AT1G04250.1     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm040793_Glyma1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm055369_Glyma2    M T A K Q T K Q H Y N R K R T Q S E R E G S Y S H K E K N F Q R G E S K R V L L F L F Y I Y L G A K L C E F I D K P E M
gm040794_Glyma1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
gm040791_Glyma1    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
 
AT1G04250.1     - M M G S V E - - - - L N L R E T E L C L G L P - - - - - - - - - - - - - G G D T V A P V T G N K R G F S E T V D L K L
gm040793_Glyma1    - - M S S E S H A V D C N L K E T E L T L G L P G - - - - - - - - - - - - - - - - - T K T T A T K R G F S D T L P - - -
gm055369_Glyma2    A T M L T K E H - - G L N L K E T E L C L G L P G G G G G G G G G G G G G G G E V E T P R A T G K R G F S E T V D L K L
gm040794_Glyma1    - - M S S E S H A V D C N L K E T E L T L G L P G - - - - - - - - - - - - - - - - - T K T T A T K R G F S D T L P - - -
gm040791_Glyma1    - - M S S E S H A V D C N L K E T E L T L G L P G - - - - - - - - - - - - - - - - - T K T T A T K R G F S D T L P - - -
 
AT1G04250.1     N L N N - E P A N K E G S T T H D V V T F D S K E K S A C P K D P A K P P A K A Q V V G W P P V R S Y R K N V M - - - -
gm040793_Glyma1    - - - - - - - - - - - - - - - - - - - - - P S Q N K I L R P T S K F P T P - K E Q L V G W P P V R A S R K N A M - - - -
gm055369_Glyma2    N L H S K E D L N E N L K N V - - - - - - - S K E K T L L - K D P A K P P A K A Q V V G W P P V R S Y R K N M M A V Q K
gm040794_Glyma1    - - - - - - - - - - - - - - - - - - - - - P S Q N K I L R P T S K F P T P - K E Q L V G W P P V R A S R K N A M - - - -
gm040791_Glyma1    - - - - - - - - - - - - - - - - - - - - - P S Q N K I L R P T S K F P T P N R E Q L V G W P P V R A S R K N A M - - - -
 
AT1G04250.1     - - - - - V S C Q K S S G G P E A A A F V K V S M D G A P Y L R K I D L R M Y K S Y D E L S N A L S N M F S S F T M G K
gm040793_Glyma1    - - - - - K S C C K - - - - - - - - - L V K V A V D G A P Y L R K V D L D M Y D S Y E H L M R E L E T M F C G L A I R N
gm055369_Glyma2    V S T E D V A E K T T S S T A N P G A F V K V S M D G A P Y L R K V D L T M Y K S Y K E L S D A L A K M F S S F T M G N
gm040794_Glyma1    - - - - - K S C C K - - - - - - - - - L V K V A V D G A P Y L R K V D L D M Y D S Y E H L M R E L E T M F C G L A I R N
gm040791_Glyma1    - - - - - K S C C K - - - - - - - - - L V K V A V D G A P Y L R K V D L D M Y D S Y E H L M R E L E T M F C G L A I R N
 
AT1G04250.1     H G G E E G M I D F M N E R K L M D L V N S W D Y V P S Y E D K D G D W M L V G D V P W P M F V D T C K R L R L M K G S
gm040793_Glyma1    H - - - - - - - - L M N E R K L M D P G N G I E Y M P T Y E D K D G D W M L V G D V P W K M F V E S C K R I R L M I S S
gm055369_Glyma2    Y G A - Q G M I D F M N E S K L M D L L N S S E Y V P S Y E D K D G D W M L V G D V P W E M F V E S C K R L R I M K G S
gm040794_Glyma1    H - - - - - - - - L M N E R K L M D P G N G I E Y M P T Y E D K D G D W M L V G D V P W K M F V E S C K R I R L M I S S
gm040791_Glyma1    H - - - - - - - - L M N E R K L M D P G N G I E Y M P T Y E D K D G D W M L V G D V P W K M F V E S C K R I R L M I S S
 
AT1G04250.1     D A I G L A P R A M - E K C K S R A
gm040793_Glyma1    E A V G L G - S S T S S K C T G S T
gm055369_Glyma2    E A I G L A P R A M - E K C K S R S
gm040794_Glyma1    E A V G L G P R S T S S K C T G S T
gm040791_Glyma1    E A V G L G P R S T S S K C T G S T
 
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