fioreDB : Database for Flower Bio-engineering by CRES-T system
fioreDB : Database for Flower Bio-engineering by CRES-T system
Input Putative repression domain
AT1G04550.2 LPAESELELGLGLSLG at 18/173 in AT1G04550.1
LPAESELELGLGLSLG at 18/239 in AT1G04550.2
Ortholog Putative repression domain Reverse top hit Relation Blast score ratio Type
Gm035802 CPEESELELGLGLSLS in 24/291 AT2G33310.3 1st_not 0.408988764 II
Pt041570 YPVEAELELGLSLGSG in 43/282 AT2G33310.3 1st_not 0.534831460 II
Get sequence file
Get alignment file
Get formatted file made by BOXSHADE
Sequence file prepared (0 sec required). Alignment has started.

CLUSTAL format alignment by MAFFT FFT-NS-2 (v7.475)


AT1G04550.2     ------------------------MRGVS-----ELEVGKSNLPAESELELGLGLSLGG-
pt041570_POPTR_ MMAGGLGSLGGGGGSSGASTNDSTMSKVE-----VVEAEASSYPVEAELELGLSLGSGGR
gm035802_Glyma1 ------------------------MSTVSKDDNLVLSSEDSSCPEESELELGLGLSLSS-
                                        *  *.      :.   *. * *:******.*. .. 

AT1G04550.2     --------------GAWKERGRILTAKDFPSVGSKRSAESSSHQGASP------------
pt041570_POPTR_ GGGGGGKGK----ANARGERGRILTAKDFPSV---RAADSVSHEGGSP------------
gm035802_Glyma1 --GPSSKSHHHHVHAPTTLYARIYTAKDFPSSAAAASSSPSSSSSSSPNITAGTKRAAAD
                               .    .** *******     ::.. * ...**            

AT1G04550.2     -----PRSSQVVGWPPIGLHRMNSLVNNQAMKAARAEE--GDGEKKVVKNDELKDV----
pt041570_POPTR_ -----TAGSQVVGWPPIRAYRMNSLV-NQA-KAARAEEDKGIGEKDISKDNLKKKIC-NG
gm035802_Glyma1 SLVANNRPSQVVGWPPLRTYRVNSFN-SHA-KSTEVFN--SVAEKSKINNTVVRKTNDND
                        ********:  :*:**:  .:* *::.. :  . .**.  ::   :.     

AT1G04550.2     ---SMKVNPKVQGLG---FVKVNMDGVGIGRKVDMRAHSSYENLAQTLEEMFF-GMTGTT
pt041570_POPTR_ NKTSAPSNEKGH-LG---FVKVNMDGIPIGRKVDLNAHACYETLAQALEEMFF--RSATT
gm035802_Glyma1 NDNNINAKEKRH-LRSSLFVKVNMDGIPIGRKVDLSAHSSYETLAQTLEDMFNESTTVTT
                   .   : * : *    ********: ******: **:.**.***:**:**    : **

AT1G04550.2     C----------------REKVKPLRLLDGSSDFVLTYEDKEGDWMLVGDVPWRMFINSVK
pt041570_POPTR_ INS---------IGGEKRQVTKPSKLLDGLSEFLLTYEDKEGDWMLVGDVPWGMFLNSVK
gm035802_Glyma1 CKGSNGEDYGIIIGGE-----RHSKLLDGSSKFVLTYEDKEGDWMLVGDVPWGMFLSSVR
                                     :  :**** *.*:****************** **:.**:

AT1G04550.2     RLRIMGTSEASGLAPRRQEQKDRQRNNPV
pt041570_POPTR_ RLRIMRTSEANGLAPRFQDRNEKQRIKPV
gm035802_Glyma1 RLRIMRTSEANGLAPRLEE-NIKQRCKPI
                ***** ****.***** :: : :** :*:
BoxShade v3.31 C (beta, 970507) Output
AT1G04550.2     - - - - - - - - - - - - - - - - - - - - - - - - M R G V S - - - - - E L E V G K S N L P A E S E L E L G L G L S L G G -
pt041570_POPTR_    M M A G G L G S L G G G G G S S G A S T N D S T M S K V E - - - - - V V E A E A S S Y P V E A E L E L G L S L G S G G R
gm035802_Glyma1    - - - - - - - - - - - - - - - - - - - - - - - - M S T V S K D D N L V L S S E D S S C P E E S E L E L G L G L S L S S -
 
AT1G04550.2     - - - - - - - - - - - - - - G A W K E R G R I L T A K D F P S V G S K R S A E S S S H Q G A S P - - - - - - - - - - - -
pt041570_POPTR_    G G G G G G K G K - - - - A N A R G E R G R I L T A K D F P S V - - - R A A D S V S H E G G S P - - - - - - - - - - - -
gm035802_Glyma1    - - G P S S K S H H H H V H A P T T L Y A R I Y T A K D F P S S A A A A S S S P S S S S S S S P N I T A G T K R A A A D
 
AT1G04550.2     - - - - - P R S S Q V V G W P P I G L H R M N S L V N N Q A M K A A R A E E - - G D G E K K V V K N D E L K D V - - - -
pt041570_POPTR_    - - - - - T A G S Q V V G W P P I R A Y R M N S L V - N Q A - K A A R A E E D K G I G E K D I S K D N L K K K I C - N G
gm035802_Glyma1    S L V A N N R P S Q V V G W P P L R T Y R V N S F N - S H A - K S T E V F N - - S V A E K S K I N N T V V R K T N D N D
 
AT1G04550.2     - - - S M K V N P K V Q G L G - - - F V K V N M D G V G I G R K V D M R A H S S Y E N L A Q T L E E M F F - G M T G T T
pt041570_POPTR_    N K T S A P S N E K G H - L G - - - F V K V N M D G I P I G R K V D L N A H A C Y E T L A Q A L E E M F F - - R S A T T
gm035802_Glyma1    N D N N I N A K E K R H - L R S S L F V K V N M D G I P I G R K V D L S A H S S Y E T L A Q T L E D M F N E S T T V T T
 
AT1G04550.2     C - - - - - - - - - - - - - - - - R E K V K P L R L L D G S S D F V L T Y E D K E G D W M L V G D V P W R M F I N S V K
pt041570_POPTR_    I N S - - - - - - - - - I G G E K R Q V T K P S K L L D G L S E F L L T Y E D K E G D W M L V G D V P W G M F L N S V K
gm035802_Glyma1    C K G S N G E D Y G I I I G G E - - - - - R H S K L L D G S S K F V L T Y E D K E G D W M L V G D V P W G M F L S S V R
 
AT1G04550.2     R L R I M G T S E A S G L A P R R Q E Q K D R Q R N N P V
pt041570_POPTR_    R L R I M R T S E A N G L A P R F Q D R N E K Q R I K P V
gm035802_Glyma1    R L R I M R T S E A N G L A P R L E E - N I K Q R C K P I
 
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